Non-Coding RNA Search

Ss1.1-Pig4-TMW8064M10.5

Sequence:


               
               TCACAAAGAAGCATGTGGAATTATTGCCCCTTGCTATTTGAAGAAAAACTACCAAATTTC
CATCTCTGGCTATTTTGATTGTACCAACTACTAAGGCACCAGTCACTAAGACATAGTTGA
GGAGGGACTTAATCATGAAGCCAGTTTCACAGTCTGTTGCCAGATGAAGGACCTCCTCAT
CTGGCAGCAGCAGCACAGAGTCGGGTGTTTCCAAGCAGAACCGTGTAGCCAAGCCCAGCA
CGTGAGGACAAATGTGACGGCAGACAGCCCCTGCTAGATCCAATTTCAATTTCTAGCTAC
ATTAACTTATTTAAAAATAAGAAAGGGAGACGAAGCACCTGCTTAGCTTACACAAATTTT
CAGAATTCTTTCTTTAAAGTCTAAAGATGTTTGTTGGGAGGTGGAGACAGTTTTTAACTC
CATAAAATAGACCCAGGTTTCTTAGCCCCTGGAAGCAGCATTCAGTAGCATCTATAAATA
AAGGGACATTCTCAGAATACAGCCATTTCCTGGAGTATCTGAACACACTCGTCCTGTCAC
CTCGGGTTCATCTCATTATTGTGAAACGCATCATGTCCAGGTTCGTCCCTCTCAGAGTCT
GACTGTGAAAGTCTCTAATATAACAACTGAATCAGCCCCTGTAGATAAGACATGCTTCCC
AGCGTGAGATTTTTGAAATCCCGTTTTCATCCAGAACTATATTTACCCACCTGTTGTCAC
TACTTGAATAGAGAAAAATTAGAAGGCTTAATAAATGCTAAGAATTTAGTACCACAAAAA
TGATTTATTTTCCCTATAGTCCACAATTAGTGATAAAAATCCTATTTTTAATGGTTAACT
GTGACATAACTTTGATGTCATACATTGTCAGTCAGATGTGGCTCTTTCCTTTCCAAGTAA
CTTGTCACTGTACTGATTCCTTACTGACTTAGCAATGTGGCCTTGGAATGCTAAGCAAAA
CATGGATGTACTGGTTGTAAATGTTTATATATTGTACAGTACCTTTATATATACACTTGA
GGTTCCGATTAGAGAAAGATCTGTAAATCGCTCGTTATTTTTTATATAGATATTAAAAAA
AAAAACAAAAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCACAAAGAAGCATGTGGAATTATTGCCCCTTGCTATTTGAAGAAAAACTACCAAATTTC
CATCTCTGGCTATTTTGATTGTACCAACTACTAAGGCACCAGTCACTAAGACATAGTTGA
GGAGGGACTTAATCATGAAGCCAGTTTCACAGTCTGTTGCCAGATGAAGGACCTCCTCAT
CTGGCAGCAGCAGCACAGAGTCGGGTGTTTCCAAGCAGAACCGTGTAGCCAAGCCCAGCA
CGTGAGGACAAATGTGACGGCAGACAGCCCCTGCTAGATCCAATTTCAATTTCTAGCTAC
ATTAACTTATTTAAAAATAAGAAAGGGAGACGAAGCACCTGCTTAGCTTACACAAATTTT
CAGAATTCTTTCTTTAAAGTCTAAAGATGTTTGTTGGGAGGTGGAGACAGTTTTTAACTC
CATAAAATAGACCCAGGTTTCTTAGCCCCTGGAAGCAGCATTCAGTAGCATCTATAAATA
AAGGGACATTCTCAGAATACAGCCATTTCCTGGAGTATCTGAACACACTCGTCCTGTCAC
CTCGGGTTCATCTCATTATTGTGAAACGCATCATGTCCAGGTTCGTCCCTCTCAGAGTCT
GACTGTGAAAGTCTCTAATATAACAACTGAATCAGCCCCTGTAGATAAGACATGCTTCCC
AGCGTGAGATTTTTGAAATCCCGTTTTCATCCAGAACTATATTTACCCACCTGTTGTCAC
TACTTGAATAGAGAAAAATTAGAAGGCTTAATAAATGCTAAGAATTTAGTACCACAAAAA
TGATTTATTTTCCCTATAGTCCACAATTAGTGATAAAAATCCTATTTTTAATGGTTAACT
GTGACATAACTTTGATGTCATACATTGTCAGTCAGATGTGGCTCTTTCCTTTCCAAGTAA
CTTGTCACTGTACTGATTCCTTACTGACTTAGCAATGTGGCCTTGGAATGCTAAGCAAAA
CATGGATGTACTGGTTGTAAATGTTTATATATTGTACAGTACCTTTATATATACACTTGA
GGTTCCGATTAGAGAAAGATCTGTAAATCGCTCGTTATTTTTTATATAGATATTAAAAAA
AAAAACAAAAAT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               787-1013, + strand, RNAz p=0.73701

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               787-1013, + strand, RNAz p=0.73701

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               2-1085, gnl|bosTau2|chr3 (24605481-24604410)
               

               
               2-1085, gnl|Hg17|chr1 (113939493-113940585)
               

               
               2-1085, gnl|Mm7|chr3 (103808231-103807247)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-1085, gnl|bosTau2|chr3 (24605481-24604410)
               

               
               2-1085, gnl|Hg17|chr1 (113939493-113940585)
               

               
               2-1085, gnl|Mm7|chr3 (103808231-103807247)

Expressed library(ies): 14 entry(ies)

More info

Expressed library(ies): 14 entry(ies)

Help | Less info


               
               lin (0.436808)
               

               
               sag (0.36543)
               

               
               mga (0.32041)
               

               
               ece (0.229305)
               

               
               aor (0.195274)
               

               
               rec (0.17307)
               

               
               lun (0.150489)
               

               
               liv (0.146284)
               

               
               pty (0.142714)
               

               
               pla (0.133672)
               

               
               ret (0.128733)
               

               
               thg (0.126791)
               

               
               ebs (0.118301)
               

               
               cty (0.10408)

Expressed library(ies): 14 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lin (0.436808)
               

               
               sag (0.36543)
               

               
               mga (0.32041)
               

               
               ece (0.229305)
               

               
               aor (0.195274)
               

               
               rec (0.17307)
               

               
               lun (0.150489)
               

               
               liv (0.146284)
               

               
               pty (0.142714)
               

               
               pla (0.133672)
               

               
               ret (0.128733)
               

               
               thg (0.126791)
               

               
               ebs (0.118301)
               

               
               cty (0.10408)

	2-1085, gnl\|bosTau2\|chr3 (24605481-24604410)
	2-1085, gnl\|Hg17\|chr1 (113939493-113940585)
	2-1085, gnl\|Mm7\|chr3 (103808231-103807247)

	lin (0.436808)
	sag (0.36543)
	mga (0.32041)
	ece (0.229305)
	aor (0.195274)
	rec (0.17307)
	lun (0.150489)
	liv (0.146284)
	pty (0.142714)
	pla (0.133672)
	ret (0.128733)
	thg (0.126791)
	ebs (0.118301)
	cty (0.10408)