Non-Coding RNA Search

Ss1.1-Pig4-TMW8064M14.5

Sequence:


               
               AAGAAGATCAAAAAGGAGCAGGTTGAAACAGTTCCTCAGGCTACGGTGAAGACTGGATTA
CAAAAAGGGTCGGCGGACCGGGGAGTGCAGGGCTCTGTCAGATTCAGTGACAGCTCCGTC
TCCGCAGCGATTGAGGAAACTGTGGACTGAGATTCCTGTACAATTTCATCCCAGAAACTC
CAGACTTGGAGTCTCCATGCAAGATTTCTTTGTCGGCGGCTTGCTAAACAGTCTCTTTGT
TTTCAATTTTGATTTTGCCAATCATCATGGCATATTCCTGCCTGGTTTCTTCTTCAAGAC
TCTGAACAATTGCTTTAACATTCAGATGATTTTTTTTTCCGGTCTGAGCTGGATGGGTAC
AGCTTAAATCATGGGTCCAGCCTAAAAACCACCGTTTAACTTAGACTGATCAATTTCAAC
ATGGACTGTTTTTGGTTTTTTTTGGTTTTTGTTTTTAAATAAAGCATCATTAATGCACAT
CTGCAGGGTTTTGCCAAACAGCCCAAACTGTATACATTACAATCATTAAAAGCTCTTATT
TTTTTTTAACGTTAGTGCCGTTATCATGGAGAACAGCGTGGCAGCTGCCTCTGGCAGTCT
GTCCTTTTTCTAGCATTTTCAGAAACTCATCGGAAATGGCAGTACCTGTGTTTCCCTTCG
AAAGCCTCTCAGTACAGCACTCCTGTTCCTCTGTTAAAACTCCTTGTTAATCCAGTGATC
TTTTAGGCCAAGGAAATATTTTGTGGTGGTGTTCTGGGTCCATACACCAGCAATGAAGGA
GATAGATTTGTGTACTTGTGTTTTTTAATCAGCGTTCACACGGGCAGGCACCCTCATTGA
TAGATGTAAGGCAACATTCATTGACAACCTTGTAGGATGGGATGTGATAACGAGGTTCCA
GTAATCTGAGCAGTCTAACGAGGCCCACATCCTCCACCACAGAGCATGGCCACACACCAA
GTGCTGCTCCCACTCGGCCTTTGCGGATCTTCATGGCCTCGGGAGACCTGTTCCTCCAGG
GTCTCTTCTGGACTGCACACTTCCACCATAGCTTGCTGGGCTGGTCTAGATGTCTGTTTG
TTGTATGGAAATTTTGGGGGAAAACAAAAATCCAAAACACAAACTGTGGGTTGAAATGTT
AACGTCTCCTTGGTTCCTTGGTACTCACCGTGCCTGATCTGCACACTTCATCGTGGCTGT
TTCTGTATAGCCTATACTGCATTAGCCCAAGAGATTGTTGCTTTGTAACTTTTTGCACTA
TTGTTTTGGCTGGATTTGTATTAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGAAGATCAAAAAGGAGCAGGTTGAAACAGTTCCTCAGGCTACGGTGAAGACTGGATTA
CAAAAAGGGTCGGCGGACCGGGGAGTGCAGGGCTCTGTCAGATTCAGTGACAGCTCCGTC
TCCGCAGCGATTGAGGAAACTGTGGACTGAGATTCCTGTACAATTTCATCCCAGAAACTC
CAGACTTGGAGTCTCCATGCAAGATTTCTTTGTCGGCGGCTTGCTAAACAGTCTCTTTGT
TTTCAATTTTGATTTTGCCAATCATCATGGCATATTCCTGCCTGGTTTCTTCTTCAAGAC
TCTGAACAATTGCTTTAACATTCAGATGATTTTTTTTTCCGGTCTGAGCTGGATGGGTAC
AGCTTAAATCATGGGTCCAGCCTAAAAACCACCGTTTAACTTAGACTGATCAATTTCAAC
ATGGACTGTTTTTGGTTTTTTTTGGTTTTTGTTTTTAAATAAAGCATCATTAATGCACAT
CTGCAGGGTTTTGCCAAACAGCCCAAACTGTATACATTACAATCATTAAAAGCTCTTATT
TTTTTTTAACGTTAGTGCCGTTATCATGGAGAACAGCGTGGCAGCTGCCTCTGGCAGTCT
GTCCTTTTTCTAGCATTTTCAGAAACTCATCGGAAATGGCAGTACCTGTGTTTCCCTTCG
AAAGCCTCTCAGTACAGCACTCCTGTTCCTCTGTTAAAACTCCTTGTTAATCCAGTGATC
TTTTAGGCCAAGGAAATATTTTGTGGTGGTGTTCTGGGTCCATACACCAGCAATGAAGGA
GATAGATTTGTGTACTTGTGTTTTTTAATCAGCGTTCACACGGGCAGGCACCCTCATTGA
TAGATGTAAGGCAACATTCATTGACAACCTTGTAGGATGGGATGTGATAACGAGGTTCCA
GTAATCTGAGCAGTCTAACGAGGCCCACATCCTCCACCACAGAGCATGGCCACACACCAA
GTGCTGCTCCCACTCGGCCTTTGCGGATCTTCATGGCCTCGGGAGACCTGTTCCTCCAGG
GTCTCTTCTGGACTGCACACTTCCACCATAGCTTGCTGGGCTGGTCTAGATGTCTGTTTG
TTGTATGGAAATTTTGGGGGAAAACAAAAATCCAAAACACAAACTGTGGGTTGAAATGTT
AACGTCTCCTTGGTTCCTTGGTACTCACCGTGCCTGATCTGCACACTTCATCGTGGCTGT
TTCTGTATAGCCTATACTGCATTAGCCCAAGAGATTGTTGCTTTGTAACTTTTTGCACTA
TTGTTTTGGCTGGATTTGTATTAC

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

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               185-299, + strand, RNAz p=0.902557
               

               
               412-510, - strand, RNAz p=0.995926
               

               
               901-1016, - strand, RNAz p=0.850198

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               185-299, + strand, RNAz p=0.902557
               

               
               412-510, - strand, RNAz p=0.995926
               

               
               901-1016, - strand, RNAz p=0.850198

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_017778, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_017778, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               66-1284, gnl|bosTau2|chr27 (21689751-21688484)
               

               
               66-1284, gnl|Hg17|chr8 (38294715-38293504)
               

               
               66-1284, gnl|Mm7|chr8 (24433177-24434416)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               66-1284, gnl|bosTau2|chr27 (21689751-21688484)
               

               
               66-1284, gnl|Hg17|chr8 (38294715-38293504)
               

               
               66-1284, gnl|Mm7|chr8 (24433177-24434416)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               fty (0.17584)
               

               
               cje (0.165235)
               

               
               liv (0.146284)
               

               
               ssp (0.13552)
               

               
               ese (0.126502)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fty (0.17584)
               

               
               cje (0.165235)
               

               
               liv (0.146284)
               

               
               ssp (0.13552)
               

               
               ese (0.126502)

	185-299, + strand, RNAz p=0.902557
	412-510, - strand, RNAz p=0.995926
	901-1016, - strand, RNAz p=0.850198

	66-1284, gnl\|bosTau2\|chr27 (21689751-21688484)
	66-1284, gnl\|Hg17\|chr8 (38294715-38293504)
	66-1284, gnl\|Mm7\|chr8 (24433177-24434416)

	fty (0.17584)
	cje (0.165235)
	liv (0.146284)
	ssp (0.13552)
	ese (0.126502)