Ss1.1-Pig4-TMW8064M16.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTTGTGGGGGCCGGGGGCGCCATGGGGGCCACTGGCGACGCCGAGCAGCCGCGGGGACCC GGCGGGGCAGAGCGGGGCGGCCCCGAGCTGGGAGACGCGGGCGCAGCGGGGCAGCTGGTT CTCACGAACCCTTGGAACATAATGATAAAGCACCGGCAGGTGCAGCGAAGGGGCCGCCGC TCACAGATGACAACAAGCTTCACAGATCCTGCCATCTCCATGGATCTCCTCCGAGCTGTT CTGCAGCCTAGTATCAATGAGGAGATCCAGACTGTCTTCAACAAGTACATGAAGTTCTTC CAAAAGGCAGCCCTGAATGTTCGAGACAATATTGGGGAAGAAGTCGATGCAGAGCAGCTG ATCCAGGAGGCCTGTCGGAGCTGCCTGGAGCAGGCTAAACTACTCTTTTCAGATGGAGAA AAAGTAATACCCAGATTGACCCATGAGCTTCCAGGGATCAAGCGTGGCCGGCAGGCAGAA GAGGAGGGTGCCCATCGGGGGAGCCCCATTCCCAAAAAGAGGAAGGGACGGCCTCCTGGA CACATCCTGTCGAATGACCGGGCCGCCGCAGGCATGGTATGGAAACCAAAATCCTGTGAA CCAATTCGCCGGGAAGGCCCCAAGTGGGACCCAGCTCGGCTGAACGAAACCACCACCTTT GTGTTGGGATCTCGGGCCAACAAGGCCCTGGGGATGGGGGGCACCAGAGGGAGAATCTAC ATCAAGCACCCACACCTCTTTAAGTACGCAGCTGACCCCCAGGACAAGCACTGGCTGGCC GAGCAGCATCACATGCGGGCGACAGGGGGGAAGATGGCCTACCTCCTCATTGAGGAGGAC ATCCGGGACCTCGCTGCCAGCGATGACTACAGAGGATGCCTGGACCTGAAGTTAGAGGAG CTGAAGTCCTTTGTCCTACCCTCCTGGATGGTTGAGAAGATGCGAAAGTACATGGAGACA CTACGGACAGAGAACGAGCACCGCGCTGTTGAAGCACCTCCACAGACCTGAAGCCAGGTC CCCTGGCTACACTTGGCAGCCCTCCTTTAAGGCCCTCTTACCCACATGGCTGAGGTCACT GCTGGGACTGCTTCTAGATGGATCTCAGCAGCATTAAGCTATGCCTGGGCTAGTTTGTAG TGACTCACTGCAGAGCACCCCCAGACTGGCATGTGGTTCTATATTTGTAAAGTTTTTGGG ATAAGAAGCAATTAAACAGTTTGTAATAAACACAGAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTTGTGGGGGCCGGGGGCGCCATGGGGGCCACTGGCGACGCCGAGCAGCCGCGGGGACCC GGCGGGGCAGAGCGGGGCGGCCCCGAGCTGGGAGACGCGGGCGCAGCGGGGCAGCTGGTT CTCACGAACCCTTGGAACATAATGATAAAGCACCGGCAGGTGCAGCGAAGGGGCCGCCGC TCACAGATGACAACAAGCTTCACAGATCCTGCCATCTCCATGGATCTCCTCCGAGCTGTT CTGCAGCCTAGTATCAATGAGGAGATCCAGACTGTCTTCAACAAGTACATGAAGTTCTTC CAAAAGGCAGCCCTGAATGTTCGAGACAATATTGGGGAAGAAGTCGATGCAGAGCAGCTG ATCCAGGAGGCCTGTCGGAGCTGCCTGGAGCAGGCTAAACTACTCTTTTCAGATGGAGAA AAAGTAATACCCAGATTGACCCATGAGCTTCCAGGGATCAAGCGTGGCCGGCAGGCAGAA GAGGAGGGTGCCCATCGGGGGAGCCCCATTCCCAAAAAGAGGAAGGGACGGCCTCCTGGA CACATCCTGTCGAATGACCGGGCCGCCGCAGGCATGGTATGGAAACCAAAATCCTGTGAA CCAATTCGCCGGGAAGGCCCCAAGTGGGACCCAGCTCGGCTGAACGAAACCACCACCTTT GTGTTGGGATCTCGGGCCAACAAGGCCCTGGGGATGGGGGGCACCAGAGGGAGAATCTAC ATCAAGCACCCACACCTCTTTAAGTACGCAGCTGACCCCCAGGACAAGCACTGGCTGGCC GAGCAGCATCACATGCGGGCGACAGGGGGGAAGATGGCCTACCTCCTCATTGAGGAGGAC ATCCGGGACCTCGCTGCCAGCGATGACTACAGAGGATGCCTGGACCTGAAGTTAGAGGAG CTGAAGTCCTTTGTCCTACCCTCCTGGATGGTTGAGAAGATGCGAAAGTACATGGAGACA CTACGGACAGAGAACGAGCACCGCGCTGTTGAAGCACCTCCACAGACCTGAAGCCAGGTC CCCTGGCTACACTTGGCAGCCCTCCTTTAAGGCCCTCTTACCCACATGGCTGAGGTCACT GCTGGGACTGCTTCTAGATGGATCTCAGCAGCATTAAGCTATGCCTGGGCTAGTTTGTAG TGACTCACTGCAGAGCACCCCCAGACTGGCATGTGGTTCTATATTTGTAAAGTTTTTGGG ATAAGAAGCAATTAAACAGTTTGTAATAAACACAGAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1029-1184, + strand, RNAz p=0.933483 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1029-1184, + strand, RNAz p=0.933483 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of NM_052951, + |
| Aligned organism(s): 33 entry(ies) | More info |
| Aligned organism(s): 33 entry(ies) | Help | Less info |
| 1-126, gnl|bosTau2|chr13 (54405178-54405303) | |
| 1-126, gnl|canFam2|chr24 (36079188-36079480) | |
| 1-126, gnl|dasNov1|scaffold_75738 (3640-3343) | |
| 1-126, gnl|echTel1|scaffold_197785 (6333-6048) | |
| 1-126, gnl|hg17|chr20 (43854028-43854316) | |
| 1-126, gnl|Hg17|chr20 (43854030-43854155) | |
| 1-126, gnl|loxAfr1|scaffold_1116 (100262-100556) | |
| 1-126, gnl|mm7|chr2 (164486683-164486958) | |
| 1-126, gnl|Mm7|chr2 (164486685-164486812) | |
| 1-126, gnl|monDom2|scaffold_35 (25114405-25114752) | |
| 1-126, gnl|oryCun1|scaffold_172944 (49096-49384) | |
| 1-126, gnl|panTro1|chr21 (46379723-46380011) | |
| 1-126, gnl|rheMac2|chr10 (18711318-18711032) | |
| 1-126, gnl|rn3|chr3 (155681359-155681630) | |
| 293-394, gnl|bosTau2|chr13 (54413524-54413625) | |
| 293-394, gnl|canFam2|chr24 (36087240-36087350) | |
| 293-394, gnl|danRer3|chr7 (52511740-52511638) | |
| 293-394, gnl|dasNov1|scaffold_139385 (4447-4337) | |
| 293-394, gnl|echTel1|scaffold_295222 (7490-7380) | |
| 293-394, gnl|galGal2|chr20 (10088242-10088352) | |
| 293-394, gnl|hg17|chr20 (43857390-43857500) | |
| 293-394, gnl|Hg17|chr20 (43857389-43857490) | |
| 293-394, gnl|loxAfr1|scaffold_1116 (109719-109829) | |
| 293-394, gnl|mm7|chr2 (164494763-164494873) | |
| 293-394, gnl|Mm7|chr2 (164494762-164494863) | |
| 293-394, gnl|monDom2|scaffold_35 (25125656-25125766) | |
| 293-394, gnl|oryCun1|scaffold_172944 (56369-56479) | |
| 293-394, gnl|rheMac2|chr10 (18704697-18704587) | |
| 293-394, gnl|rn3|chr3 (155690019-155690123) | |
| 293-394, gnl|tetNig1|chrUn_random (86421959-86421854) | |
| 870-1236, gnl|bosTau2|chr13 (54427124-54427490) | |
| 870-1236, gnl|Hg17|chr20 (43873100-43873466) | |
| 870-1236, gnl|Mm7|chr2 (164508514-164508880) |
| Aligned organism(s): 33 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-126, gnl|bosTau2|chr13 (54405178-54405303) | |
| 1-126, gnl|canFam2|chr24 (36079188-36079480) | |
| 1-126, gnl|dasNov1|scaffold_75738 (3640-3343) | |
| 1-126, gnl|echTel1|scaffold_197785 (6333-6048) | |
| 1-126, gnl|hg17|chr20 (43854028-43854316) | |
| 1-126, gnl|Hg17|chr20 (43854030-43854155) | |
| 1-126, gnl|loxAfr1|scaffold_1116 (100262-100556) | |
| 1-126, gnl|mm7|chr2 (164486683-164486958) | |
| 1-126, gnl|Mm7|chr2 (164486685-164486812) | |
| 1-126, gnl|monDom2|scaffold_35 (25114405-25114752) | |
| 1-126, gnl|oryCun1|scaffold_172944 (49096-49384) | |
| 1-126, gnl|panTro1|chr21 (46379723-46380011) | |
| 1-126, gnl|rheMac2|chr10 (18711318-18711032) | |
| 1-126, gnl|rn3|chr3 (155681359-155681630) | |
| 293-394, gnl|bosTau2|chr13 (54413524-54413625) | |
| 293-394, gnl|canFam2|chr24 (36087240-36087350) | |
| 293-394, gnl|danRer3|chr7 (52511740-52511638) | |
| 293-394, gnl|dasNov1|scaffold_139385 (4447-4337) | |
| 293-394, gnl|echTel1|scaffold_295222 (7490-7380) | |
| 293-394, gnl|galGal2|chr20 (10088242-10088352) | |
| 293-394, gnl|hg17|chr20 (43857390-43857500) | |
| 293-394, gnl|Hg17|chr20 (43857389-43857490) | |
| 293-394, gnl|loxAfr1|scaffold_1116 (109719-109829) | |
| 293-394, gnl|mm7|chr2 (164494763-164494873) | |
| 293-394, gnl|Mm7|chr2 (164494762-164494863) | |
| 293-394, gnl|monDom2|scaffold_35 (25125656-25125766) | |
| 293-394, gnl|oryCun1|scaffold_172944 (56369-56479) | |
| 293-394, gnl|rheMac2|chr10 (18704697-18704587) | |
| 293-394, gnl|rn3|chr3 (155690019-155690123) | |
| 293-394, gnl|tetNig1|chrUn_random (86421959-86421854) | |
| 870-1236, gnl|bosTau2|chr13 (54427124-54427490) | |
| 870-1236, gnl|Hg17|chr20 (43873100-43873466) | |
| 870-1236, gnl|Mm7|chr2 (164508514-164508880) |
| Expressed library(ies): 11 entry(ies) | More info |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
| cov (0.264306) | |
| ece (0.229305) | |
| nlu (0.191681) | |
| ill (0.175593) | |
| eye (0.170503) | |
| cag (0.151194) | |
| hyp (0.142837) | |
| nmm (0.132802) | |
| ese (0.126502) | |
| eru (0.120048) | |
| cty (0.10408) |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cov (0.264306) | |
| ece (0.229305) | |
| nlu (0.191681) | |
| ill (0.175593) | |
| eye (0.170503) | |
| cag (0.151194) | |
| hyp (0.142837) | |
| nmm (0.132802) | |
| ese (0.126502) | |
| eru (0.120048) | |
| cty (0.10408) |