Ss1.1-Pig4-TMW8064M19.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCGGGGCGGGCGGGAGCGGAGGACGTAGAGGACCCGGACGAGCGCGCTAGGGCTGCCCAC GTCCGCCTACACCAAGCGCCGTGCCCCAACCTGGAGCCGCCTCGCCCCAGGGACCCCCGG CCAGGGGGCCGAGGAGGTCCTCAGTCCTGTCCTGTCTTCCAGACCCGGAGGACTGAGGCT CCCGGACGACGAGGAACCGCCCAACATGGCATCAGAGAGCGGGAAGCTGTGGGGTGGCCG CTTTGTGGGTGCAGTGGACCCCATCATGGAGAAGTTCAACGCGTCCATCGCCTATGACCG GCACCTGTGGGAGGTGGACGTGCAGGGCAGCAAGGCCTACAGCCGGGGCCTGGAGAAGGC GGGGCTCCTCACCAAGGCCGAGATGGACCAGATACTCCACGGCCTGGACAAGGTAGCTGA GGAGTGGGCCCAGGGCACCTTCAAACTCAACCCCAATGATGAAGACATCCATACGGCCAA TGAGCGGCGTCTGAAGGAGCTCATCGGTGAAACGGCAGGGAAGCTGCACACAGGACGAAG TCGGAACGACCAGGTGGTCACTGACCTCAGGCTGTGGATGCGGCAGAACTGCTCCGCCCT CTCGGCCCTCCTCCGGGAGCTCATCAGAACCATGGTGGATCGGGCAGAGGCGGAACGTGA CATCCTCTTCCCGGGGTACACACACCTGCAGAGGGCTCAGCCCATCCGCTGGAGCCACTG GATCCTGAGCCATGCTGTGGCACTGACCAGAGACTCCGAGAGGCTGCTGGAGGTGCAGAA GCGGATCAACGTCCTGCCCCTGGGGAGCGGGGCCATTGCAGGCAACCCTCTGGGTGTGGA CCGGGAGCTGCTGCGAGCAGAGCTGAACTTTGGCGCCGTCACTCTCAACAGCATGGATGC CACCAGCGAGCGAGACTTTGTGGCCGAGTTCCTGTTCTGGGCTTCGCTGTGCATGACCCA CCTCAGCAGGATGGCCGAGGACCTCATCCTCTATGGCACCAAGGAATTCAACTTTGTGCA GCTCTCAGACGCCTACAGCACTGGAAGCAGCCTGATGCCCCAGAAGAAAAACCCAGACAG CCTGGAGCTGATCCGGAGCAAGGCGGGGCGAGTGTTTGGGCGGTGCGCTGGACTCCTGAT GACACTCAAGGGACTTCCAAGCACCTACAACAAGGACTTACAGGAGGACAAGGAAGCCGT GTTTGAAGTGTCTGACACCATGAGCGCTGTCCTCCAGGTGGCCACTGGGGTCATCTCTAC ACTGCAGGTTCGCCGTGAGAACATGGCACAGGCTCTTAGTCCCGACATGCTGGCCACTGA CCTCGCCTACTACCTAGTCCGCAAAGGGATGCCATTCCGCCAGGCCCATGAGGCCTCCGG GAAAGCCGTGTTCATGGCCGAGACCAAGGGGGTGGCCCTCAACCAGCTGTCCCTGCAGGA GCTGCAGAACATCAGTCCCCTGTTCTCGGGCGACGTGAGCCAGGTGTGGGACTACAGCCA CAGCGTGGAGCAGTACACAGCCCTGGGTGGCACCGCGCGCTCCAGTGTCGACTGGCAGAT CGCCCAGGTGCGAGCACTCCTGCGGGCACAGCAGGCCTAGAGCCCTCCTCTCCCCGCTCC CAAATAAAACAGACCCAAGCGGAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCGGGGCGGGCGGGAGCGGAGGACGTAGAGGACCCGGACGAGCGCGCTAGGGCTGCCCAC GTCCGCCTACACCAAGCGCCGTGCCCCAACCTGGAGCCGCCTCGCCCCAGGGACCCCCGG CCAGGGGGCCGAGGAGGTCCTCAGTCCTGTCCTGTCTTCCAGACCCGGAGGACTGAGGCT CCCGGACGACGAGGAACCGCCCAACATGGCATCAGAGAGCGGGAAGCTGTGGGGTGGCCG CTTTGTGGGTGCAGTGGACCCCATCATGGAGAAGTTCAACGCGTCCATCGCCTATGACCG GCACCTGTGGGAGGTGGACGTGCAGGGCAGCAAGGCCTACAGCCGGGGCCTGGAGAAGGC GGGGCTCCTCACCAAGGCCGAGATGGACCAGATACTCCACGGCCTGGACAAGGTAGCTGA GGAGTGGGCCCAGGGCACCTTCAAACTCAACCCCAATGATGAAGACATCCATACGGCCAA TGAGCGGCGTCTGAAGGAGCTCATCGGTGAAACGGCAGGGAAGCTGCACACAGGACGAAG TCGGAACGACCAGGTGGTCACTGACCTCAGGCTGTGGATGCGGCAGAACTGCTCCGCCCT CTCGGCCCTCCTCCGGGAGCTCATCAGAACCATGGTGGATCGGGCAGAGGCGGAACGTGA CATCCTCTTCCCGGGGTACACACACCTGCAGAGGGCTCAGCCCATCCGCTGGAGCCACTG GATCCTGAGCCATGCTGTGGCACTGACCAGAGACTCCGAGAGGCTGCTGGAGGTGCAGAA GCGGATCAACGTCCTGCCCCTGGGGAGCGGGGCCATTGCAGGCAACCCTCTGGGTGTGGA CCGGGAGCTGCTGCGAGCAGAGCTGAACTTTGGCGCCGTCACTCTCAACAGCATGGATGC CACCAGCGAGCGAGACTTTGTGGCCGAGTTCCTGTTCTGGGCTTCGCTGTGCATGACCCA CCTCAGCAGGATGGCCGAGGACCTCATCCTCTATGGCACCAAGGAATTCAACTTTGTGCA GCTCTCAGACGCCTACAGCACTGGAAGCAGCCTGATGCCCCAGAAGAAAAACCCAGACAG CCTGGAGCTGATCCGGAGCAAGGCGGGGCGAGTGTTTGGGCGGTGCGCTGGACTCCTGAT GACACTCAAGGGACTTCCAAGCACCTACAACAAGGACTTACAGGAGGACAAGGAAGCCGT GTTTGAAGTGTCTGACACCATGAGCGCTGTCCTCCAGGTGGCCACTGGGGTCATCTCTAC ACTGCAGGTTCGCCGTGAGAACATGGCACAGGCTCTTAGTCCCGACATGCTGGCCACTGA CCTCGCCTACTACCTAGTCCGCAAAGGGATGCCATTCCGCCAGGCCCATGAGGCCTCCGG GAAAGCCGTGTTCATGGCCGAGACCAAGGGGGTGGCCCTCAACCAGCTGTCCCTGCAGGA GCTGCAGAACATCAGTCCCCTGTTCTCGGGCGACGTGAGCCAGGTGTGGGACTACAGCCA CAGCGTGGAGCAGTACACAGCCCTGGGTGGCACCGCGCGCTCCAGTGTCGACTGGCAGAT CGCCCAGGTGCGAGCACTCCTGCGGGCACAGCAGGCCTAGAGCCCTCCTCTCCCCGCTCC CAAATAAAACAGACCCAAGCGGAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 923-1013, - strand, RNAz p=0.736735 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 923-1013, - strand, RNAz p=0.736735 |
| Aligned organism(s): 77 entry(ies) | More info |
| Aligned organism(s): 77 entry(ies) | Help | Less info |
| 216-415, gnl|bosTau2|chr25 (23753025-23752826) | |
| 216-415, gnl|canFam2|chr6 (3777471-3777639) | |
| 216-415, gnl|canFam2|chr6 (3777657-3777486) | |
| 216-415, gnl|danRer3|chr21 (24168101-24168260) | |
| 216-415, gnl|dasNov1|scaffold_247930 (4140-3989) | |
| 216-415, gnl|dasNov1|scaffold_247930 (3971-4140) | |
| 216-415, gnl|fr1|chrUn (44086346-44086204) | |
| 216-415, gnl|fr1|chrUn (44086175-44086331) | |
| 216-415, gnl|galGal2|chr19 (4633828-4633657) | |
| 216-415, gnl|hg17|chr22 (22319953-22320093) | |
| 216-415, gnl|hg17|chr7 (64990924-64991095) | |
| 216-415, gnl|Hg17|chr7 (64990938-64991137) | |
| 216-415, gnl|mm7|chr5 (129257533-129257679) | |
| 216-415, gnl|mm7|chr5 (129257697-129257526) | |
| 216-415, gnl|Mm7|chr5 (129257681-129257482) | |
| 216-415, gnl|monDom2|scaffold_81 (533913-533771) | |
| 216-415, gnl|monDom2|scaffold_81 (533727-533898) | |
| 216-415, gnl|oryCun1|scaffold_192178 (10479-10311) | |
| 216-415, gnl|oryCun1|scaffold_192178 (10293-10464) | |
| 216-415, gnl|panTro1|chr23 (22331247-22331387) | |
| 216-415, gnl|panTro1|chr6 (66640134-66640305) | |
| 216-415, gnl|rheMac2|chr3 (58841843-58841675) | |
| 216-415, gnl|rheMac2|chr3 (58841657-58841828) | |
| 216-415, gnl|rn3|chr12 (27575190-27575024) | |
| 216-415, gnl|rn3|chr12 (27575006-27575177) | |
| 216-415, gnl|tetNig1|chr7 (7521634-7521492) | |
| 216-415, gnl|tetNig1|chr7 (7521463-7521619) | |
| 216-415, gnl|xenTro1|scaffold_63 (956651-956816) | |
| 550-652, gnl|bosTau2|chr25 (23751988-23751886) | |
| 550-652, gnl|canFam2|chr6 (3776140-3776419) | |
| 550-652, gnl|canFam2|chr6 (3776279-3776140) | |
| 550-652, gnl|danRer3|chr21 (24172642-24172764) | |
| 550-652, gnl|echTel1|scaffold_242043 (457-676) | |
| 550-652, gnl|echTel1|scaffold_242043 (596-457) | |
| 550-652, gnl|fr1|chrUn (44087090-44086904) | |
| 550-652, gnl|fr1|chrUn (44086973-44087090) | |
| 550-652, gnl|galGal2|chr19 (4631603-4631488) | |
| 550-652, gnl|hg17|chr22 (22319195-22319458) | |
| 550-652, gnl|hg17|chr7 (64992200-64992338) | |
| 550-652, gnl|Hg17|chr7 (64992210-64992312) | |
| 550-652, gnl|loxAfr1|scaffold_118647 (4273-4039) | |
| 550-652, gnl|loxAfr1|scaffold_118647 (4134-4273) | |
| 550-652, gnl|mm7|chr5 (129256106-129256369) | |
| 550-652, gnl|mm7|chr5 (129256247-129256106) | |
| 550-652, gnl|Mm7|chr5 (129256234-129256132) | |
| 550-652, gnl|monDom2|scaffold_81 (536178-535935) | |
| 550-652, gnl|monDom2|scaffold_81 (536038-536155) | |
| 550-652, gnl|oryCun1|scaffold_192178 (11544-11280) | |
| 550-652, gnl|oryCun1|scaffold_192178 (11403-11544) | |
| 550-652, gnl|panTro1|chr23 (22330489-22330752) | |
| 550-652, gnl|panTro1|chr6 (66641410-66641548) | |
| 550-652, gnl|rheMac2|chr3 (58843058-58842794) | |
| 550-652, gnl|rheMac2|chr3 (58842920-58843058) | |
| 550-652, gnl|rn3|chr12 (27576548-27576306) | |
| 550-652, gnl|rn3|chr12 (27576415-27576546) | |
| 550-652, gnl|tetNig1|chr7 (7522370-7522475) | |
| 550-652, gnl|xenTro1|scaffold_63 (959518-959637) | |
| 923-1038, gnl|bosTau2|chr25 (23749222-23749107) | |
| 923-1038, gnl|canFam2|chr6 (3773021-3772876) | |
| 923-1038, gnl|danRer3|chr21 (24176362-24176503) | |
| 923-1038, gnl|echTel1|scaffold_185380 (5561-5703) | |
| 923-1038, gnl|fr1|chrUn (44087747-44087877) | |
| 923-1038, gnl|galGal2|chr19 (4629703-4629551) | |
| 923-1038, gnl|hg17|chr7 (64997934-64998075) | |
| 923-1038, gnl|Hg17|chr7 (64997943-64998058) | |
| 923-1038, gnl|loxAfr1|scaffold_40870 (1449-1592) | |
| 923-1038, gnl|mm7|chr5 (129251354-129251218) | |
| 923-1038, gnl|Mm7|chr5 (129251339-129251224) | |
| 923-1038, gnl|monDom2|scaffold_81 (540427-540580) | |
| 923-1038, gnl|oryCun1|scaffold_201702 (81414-81263) | |
| 923-1038, gnl|panTro1|chr6 (66647641-66647782) | |
| 923-1038, gnl|rheMac2|chr3 (58848929-58849074) | |
| 923-1038, gnl|rn3|chr12 (27581437-27581573) | |
| 923-1038, gnl|tetNig1|chr7 (7523120-7523245) | |
| 1452-1636, gnl|bosTau2|chr25 (23747137-23746953) | |
| 1452-1636, gnl|Hg17|chr7 (65001901-65002084) | |
| 1452-1636, gnl|Mm7|chr5 (129249527-129249339) |
| Aligned organism(s): 77 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 216-415, gnl|bosTau2|chr25 (23753025-23752826) | |
| 216-415, gnl|canFam2|chr6 (3777471-3777639) | |
| 216-415, gnl|canFam2|chr6 (3777657-3777486) | |
| 216-415, gnl|danRer3|chr21 (24168101-24168260) | |
| 216-415, gnl|dasNov1|scaffold_247930 (4140-3989) | |
| 216-415, gnl|dasNov1|scaffold_247930 (3971-4140) | |
| 216-415, gnl|fr1|chrUn (44086346-44086204) | |
| 216-415, gnl|fr1|chrUn (44086175-44086331) | |
| 216-415, gnl|galGal2|chr19 (4633828-4633657) | |
| 216-415, gnl|hg17|chr22 (22319953-22320093) | |
| 216-415, gnl|hg17|chr7 (64990924-64991095) | |
| 216-415, gnl|Hg17|chr7 (64990938-64991137) | |
| 216-415, gnl|mm7|chr5 (129257533-129257679) | |
| 216-415, gnl|mm7|chr5 (129257697-129257526) | |
| 216-415, gnl|Mm7|chr5 (129257681-129257482) | |
| 216-415, gnl|monDom2|scaffold_81 (533913-533771) | |
| 216-415, gnl|monDom2|scaffold_81 (533727-533898) | |
| 216-415, gnl|oryCun1|scaffold_192178 (10479-10311) | |
| 216-415, gnl|oryCun1|scaffold_192178 (10293-10464) | |
| 216-415, gnl|panTro1|chr23 (22331247-22331387) | |
| 216-415, gnl|panTro1|chr6 (66640134-66640305) | |
| 216-415, gnl|rheMac2|chr3 (58841843-58841675) | |
| 216-415, gnl|rheMac2|chr3 (58841657-58841828) | |
| 216-415, gnl|rn3|chr12 (27575190-27575024) | |
| 216-415, gnl|rn3|chr12 (27575006-27575177) | |
| 216-415, gnl|tetNig1|chr7 (7521634-7521492) | |
| 216-415, gnl|tetNig1|chr7 (7521463-7521619) | |
| 216-415, gnl|xenTro1|scaffold_63 (956651-956816) | |
| 550-652, gnl|bosTau2|chr25 (23751988-23751886) | |
| 550-652, gnl|canFam2|chr6 (3776140-3776419) | |
| 550-652, gnl|canFam2|chr6 (3776279-3776140) | |
| 550-652, gnl|danRer3|chr21 (24172642-24172764) | |
| 550-652, gnl|echTel1|scaffold_242043 (457-676) | |
| 550-652, gnl|echTel1|scaffold_242043 (596-457) | |
| 550-652, gnl|fr1|chrUn (44087090-44086904) | |
| 550-652, gnl|fr1|chrUn (44086973-44087090) | |
| 550-652, gnl|galGal2|chr19 (4631603-4631488) | |
| 550-652, gnl|hg17|chr22 (22319195-22319458) | |
| 550-652, gnl|hg17|chr7 (64992200-64992338) | |
| 550-652, gnl|Hg17|chr7 (64992210-64992312) | |
| 550-652, gnl|loxAfr1|scaffold_118647 (4273-4039) | |
| 550-652, gnl|loxAfr1|scaffold_118647 (4134-4273) | |
| 550-652, gnl|mm7|chr5 (129256106-129256369) | |
| 550-652, gnl|mm7|chr5 (129256247-129256106) | |
| 550-652, gnl|Mm7|chr5 (129256234-129256132) | |
| 550-652, gnl|monDom2|scaffold_81 (536178-535935) | |
| 550-652, gnl|monDom2|scaffold_81 (536038-536155) | |
| 550-652, gnl|oryCun1|scaffold_192178 (11544-11280) | |
| 550-652, gnl|oryCun1|scaffold_192178 (11403-11544) | |
| 550-652, gnl|panTro1|chr23 (22330489-22330752) | |
| 550-652, gnl|panTro1|chr6 (66641410-66641548) | |
| 550-652, gnl|rheMac2|chr3 (58843058-58842794) | |
| 550-652, gnl|rheMac2|chr3 (58842920-58843058) | |
| 550-652, gnl|rn3|chr12 (27576548-27576306) | |
| 550-652, gnl|rn3|chr12 (27576415-27576546) | |
| 550-652, gnl|tetNig1|chr7 (7522370-7522475) | |
| 550-652, gnl|xenTro1|scaffold_63 (959518-959637) | |
| 923-1038, gnl|bosTau2|chr25 (23749222-23749107) | |
| 923-1038, gnl|canFam2|chr6 (3773021-3772876) | |
| 923-1038, gnl|danRer3|chr21 (24176362-24176503) | |
| 923-1038, gnl|echTel1|scaffold_185380 (5561-5703) | |
| 923-1038, gnl|fr1|chrUn (44087747-44087877) | |
| 923-1038, gnl|galGal2|chr19 (4629703-4629551) | |
| 923-1038, gnl|hg17|chr7 (64997934-64998075) | |
| 923-1038, gnl|Hg17|chr7 (64997943-64998058) | |
| 923-1038, gnl|loxAfr1|scaffold_40870 (1449-1592) | |
| 923-1038, gnl|mm7|chr5 (129251354-129251218) | |
| 923-1038, gnl|Mm7|chr5 (129251339-129251224) | |
| 923-1038, gnl|monDom2|scaffold_81 (540427-540580) | |
| 923-1038, gnl|oryCun1|scaffold_201702 (81414-81263) | |
| 923-1038, gnl|panTro1|chr6 (66647641-66647782) | |
| 923-1038, gnl|rheMac2|chr3 (58848929-58849074) | |
| 923-1038, gnl|rn3|chr12 (27581437-27581573) | |
| 923-1038, gnl|tetNig1|chr7 (7523120-7523245) | |
| 1452-1636, gnl|bosTau2|chr25 (23747137-23746953) | |
| 1452-1636, gnl|Hg17|chr7 (65001901-65002084) | |
| 1452-1636, gnl|Mm7|chr5 (129249527-129249339) |
| Expressed library(ies): 15 entry(ies) | More info |
| Expressed library(ies): 15 entry(ies) | Help | Less info |
| duo (0.345602) | |
| sme (0.305437) | |
| fce (0.271592) | |
| mas (0.210305) | |
| nep (0.183925) | |
| eye (0.170503) | |
| nje (0.16592) | |
| cki (0.165235) | |
| nco (0.161734) | |
| cli (0.152812) | |
| eli (0.151814) | |
| cag (0.151194) | |
| hyp (0.142837) | |
| nmm (0.132802) | |
| cty (0.10408) |
| Expressed library(ies): 15 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| duo (0.345602) | |
| sme (0.305437) | |
| fce (0.271592) | |
| mas (0.210305) | |
| nep (0.183925) | |
| eye (0.170503) | |
| nje (0.16592) | |
| cki (0.165235) | |
| nco (0.161734) | |
| cli (0.152812) | |
| eli (0.151814) | |
| cag (0.151194) | |
| hyp (0.142837) | |
| nmm (0.132802) | |
| cty (0.10408) |