Ss1.1-Pig4-TMW8064M20.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTACGGTGGAATAACTGTCTACTGATTGCATGTGTTCTGTCCGTGAGGCTTAGCGAAGAG TATTTGGTTTTTGTACCTTAAAACTTTTAAAATAAAAACGGCAGCTTGAGAGGGACTCTT CTCTTTACAGACTCGCATTAAGCATGGCCTCGTAGACTCTCAGCCCTTTCCAAGCTTGCA GTTATCTATTTCTTTGTGCCATTCCTCAAATGATAAGAAATCCCAAAAATCTTCTACTGA GAAGCAAAGTCCAGAGGACCATCTTTATGTCCTAGAGCATAACTTGCATCTCCTGATTAG AGAGTTTCATAAACAGACCTTGAGCTCCATCATGATGCCTCATCCAGCAAGTGCACCTTT TGGCCACAAGAGAATGAGACTTTCGGGTCCTCAAGCTTTTGATAAAAATGAAATTAATTC AATACAGTCAAGTGAAGGGCTTCTGGAAAAAATAATTAAACAAGCAAAGCACATATTTCT GAGGAGTAGGACTGCAGCAACTATTGACAGCTTAGCAAGTCGCATTGAGGATCCTCAGAT ACAGGCTCACTGGTCAAATATTAATGATGTGTATGAATCTAGTGTGAAAGTCTTAATCAC ATCACAAGGCTATGAACAAATATGCAAGTCCATTCAGCTGCAGTTGAATATTGGAGTTGA GCAGATCCGAGTTGTCCACAGAGATGGAAGGGTCATTACACTGTCTCACCAGGAGCAGGA GCTGCAGGATTTCCTTCTGTCTCAGATGTCACAGCATCAGGTGCACGCAGTTCAGCAGCT AGCCAAGGTCATGGGCTGGCAGGTCCTGAGCTTCAGTAATCACGTGGGACTTGGGCCCAT AGAAAGCATTGGCAATGCCTCTGCCATCACAGTGGCCTCTCCGAGCGGTGACTATGCTAT TTCAGTTCGTAATGGCCCGGAAAGTGGCAGCAAGGTTATGGTTCAGTTTCCCCGTAACCA GTGTAAAGACCTTCCAAAAAGTGACGTTTTACAAGATAGCAAATGGAATCATCTTCGTGG GCCATTCAGAGAAGTTCAGTGGAATAAAATGGAAGGCCGAAACTTTGTTTATAAAATGGA ACTGCTTATGTCTGCACTTAGCCCTTGTCTGCTGTGATTCTTTTTTCCAGACCATTTTCC AGATTTTTTTTTTCCATGAGAAGTTTCCAGAAACTTTGACTTGAGAAACTTTTGCCCTTC ATCCCTAAGCGCAAGGAAGAGGAATCTTCCAAAGGAGTATTGTTTTTTAAGTGTAATAAT TAGCACATGTTTACCTAGCATTTTGAAACCTTTCACTTTATAAGTGAGAAGTGCTCTGAA ATGCAAAAATTTATGTACAGGTATGGGGTATATAATTAGGGAGCGATGTAAAGTACTGTT TTTTATGCAGTTAACTTGAAATGTTACTAACTTATGGATTTGAGTTTGCTTTTGAAAATA TTCCTTTGATGTTGACATTAAATAAAGCATATGGTTAAAAATCTGAGA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTACGGTGGAATAACTGTCTACTGATTGCATGTGTTCTGTCCGTGAGGCTTAGCGAAGAG TATTTGGTTTTTGTACCTTAAAACTTTTAAAATAAAAACGGCAGCTTGAGAGGGACTCTT CTCTTTACAGACTCGCATTAAGCATGGCCTCGTAGACTCTCAGCCCTTTCCAAGCTTGCA GTTATCTATTTCTTTGTGCCATTCCTCAAATGATAAGAAATCCCAAAAATCTTCTACTGA GAAGCAAAGTCCAGAGGACCATCTTTATGTCCTAGAGCATAACTTGCATCTCCTGATTAG AGAGTTTCATAAACAGACCTTGAGCTCCATCATGATGCCTCATCCAGCAAGTGCACCTTT TGGCCACAAGAGAATGAGACTTTCGGGTCCTCAAGCTTTTGATAAAAATGAAATTAATTC AATACAGTCAAGTGAAGGGCTTCTGGAAAAAATAATTAAACAAGCAAAGCACATATTTCT GAGGAGTAGGACTGCAGCAACTATTGACAGCTTAGCAAGTCGCATTGAGGATCCTCAGAT ACAGGCTCACTGGTCAAATATTAATGATGTGTATGAATCTAGTGTGAAAGTCTTAATCAC ATCACAAGGCTATGAACAAATATGCAAGTCCATTCAGCTGCAGTTGAATATTGGAGTTGA GCAGATCCGAGTTGTCCACAGAGATGGAAGGGTCATTACACTGTCTCACCAGGAGCAGGA GCTGCAGGATTTCCTTCTGTCTCAGATGTCACAGCATCAGGTGCACGCAGTTCAGCAGCT AGCCAAGGTCATGGGCTGGCAGGTCCTGAGCTTCAGTAATCACGTGGGACTTGGGCCCAT AGAAAGCATTGGCAATGCCTCTGCCATCACAGTGGCCTCTCCGAGCGGTGACTATGCTAT TTCAGTTCGTAATGGCCCGGAAAGTGGCAGCAAGGTTATGGTTCAGTTTCCCCGTAACCA GTGTAAAGACCTTCCAAAAAGTGACGTTTTACAAGATAGCAAATGGAATCATCTTCGTGG GCCATTCAGAGAAGTTCAGTGGAATAAAATGGAAGGCCGAAACTTTGTTTATAAAATGGA ACTGCTTATGTCTGCACTTAGCCCTTGTCTGCTGTGATTCTTTTTTCCAGACCATTTTCC AGATTTTTTTTTTCCATGAGAAGTTTCCAGAAACTTTGACTTGAGAAACTTTTGCCCTTC ATCCCTAAGCGCAAGGAAGAGGAATCTTCCAAAGGAGTATTGTTTTTTAAGTGTAATAAT TAGCACATGTTTACCTAGCATTTTGAAACCTTTCACTTTATAAGTGAGAAGTGCTCTGAA ATGCAAAAATTTATGTACAGGTATGGGGTATATAATTAGGGAGCGATGTAAAGTACTGTT TTTTATGCAGTTAACTTGAAATGTTACTAACTTATGGATTTGAGTTTGCTTTTGAAAATA TTCCTTTGATGTTGACATTAAATAAAGCATATGGTTAAAAATCTGAGA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 303-461, - strand, RNAz p=0.767811 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 303-461, - strand, RNAz p=0.767811 |
| Aligned organism(s): 32 entry(ies) | More info |
| Aligned organism(s): 32 entry(ies) | Help | Less info |
| 6-156, gnl|bosTau2|chr29 (604858-605011) | |
| 6-156, gnl|dasNov1|scaffold_2894 (73796-73893) | |
| 6-156, gnl|echTel1|scaffold_137058 (193-68) | |
| 6-156, gnl|hg17|chr11 (93169901-93170028) | |
| 6-156, gnl|panTro1|chr9 (95076085-95076212) | |
| 6-156, gnl|rheMac2|chr14 (92354982-92355105) | |
| 6-156, gnl|rn3|chr8 (12073017-12072899) | |
| 303-490, gnl|bosTau2|chr29 (605438-605625) | |
| 303-490, gnl|Hg17|chr11 (93170347-93170534) | |
| 303-490, gnl|Mm7|chr9 (15109135-15108948) | |
| 621-755, gnl|bosTau2|chr29 (619622-619756) | |
| 621-755, gnl|canFam2|chr21 (9969518-9969379) | |
| 621-755, gnl|danRer3|chr16 (26889269-26889139) | |
| 621-755, gnl|dasNov1|scaffold_2894 (79877-80014) | |
| 621-755, gnl|echTel1|scaffold_226009 (3033-2894) | |
| 621-755, gnl|fr1|chrUn (14634968-14635097) | |
| 621-755, gnl|galGal2|chr1 (177592887-177592751) | |
| 621-755, gnl|hg17|chr11 (93180319-93180458) | |
| 621-755, gnl|Hg17|chr11 (93180325-93180463) | |
| 621-755, gnl|loxAfr1|scaffold_46566 (6516-6377) | |
| 621-755, gnl|mm7|chr9 (15104088-15103953) | |
| 621-755, gnl|Mm7|chr9 (15104080-15103948) | |
| 621-755, gnl|monDom2|scaffold_15 (4045400-4045261) | |
| 621-755, gnl|oryCun1|scaffold_90971 (4538-4399) | |
| 621-755, gnl|panTro1|chr9 (95086466-95086605) | |
| 621-755, gnl|rheMac2|chr14 (92365815-92365954) | |
| 621-755, gnl|rn3|chr8 (12067850-12067713) | |
| 621-755, gnl|tetNig1|chrUn_random (14888303-14888430) | |
| 621-755, gnl|xenTro1|scaffold_645 (62941-62801) | |
| 903-1482, gnl|bosTau2|chr29 (623020-623585) | |
| 903-1482, gnl|Hg17|chr11 (93184664-93185221) | |
| 903-1482, gnl|Mm7|chr9 (15101047-15100471) |
| Aligned organism(s): 32 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 6-156, gnl|bosTau2|chr29 (604858-605011) | |
| 6-156, gnl|dasNov1|scaffold_2894 (73796-73893) | |
| 6-156, gnl|echTel1|scaffold_137058 (193-68) | |
| 6-156, gnl|hg17|chr11 (93169901-93170028) | |
| 6-156, gnl|panTro1|chr9 (95076085-95076212) | |
| 6-156, gnl|rheMac2|chr14 (92354982-92355105) | |
| 6-156, gnl|rn3|chr8 (12073017-12072899) | |
| 303-490, gnl|bosTau2|chr29 (605438-605625) | |
| 303-490, gnl|Hg17|chr11 (93170347-93170534) | |
| 303-490, gnl|Mm7|chr9 (15109135-15108948) | |
| 621-755, gnl|bosTau2|chr29 (619622-619756) | |
| 621-755, gnl|canFam2|chr21 (9969518-9969379) | |
| 621-755, gnl|danRer3|chr16 (26889269-26889139) | |
| 621-755, gnl|dasNov1|scaffold_2894 (79877-80014) | |
| 621-755, gnl|echTel1|scaffold_226009 (3033-2894) | |
| 621-755, gnl|fr1|chrUn (14634968-14635097) | |
| 621-755, gnl|galGal2|chr1 (177592887-177592751) | |
| 621-755, gnl|hg17|chr11 (93180319-93180458) | |
| 621-755, gnl|Hg17|chr11 (93180325-93180463) | |
| 621-755, gnl|loxAfr1|scaffold_46566 (6516-6377) | |
| 621-755, gnl|mm7|chr9 (15104088-15103953) | |
| 621-755, gnl|Mm7|chr9 (15104080-15103948) | |
| 621-755, gnl|monDom2|scaffold_15 (4045400-4045261) | |
| 621-755, gnl|oryCun1|scaffold_90971 (4538-4399) | |
| 621-755, gnl|panTro1|chr9 (95086466-95086605) | |
| 621-755, gnl|rheMac2|chr14 (92365815-92365954) | |
| 621-755, gnl|rn3|chr8 (12067850-12067713) | |
| 621-755, gnl|tetNig1|chrUn_random (14888303-14888430) | |
| 621-755, gnl|xenTro1|scaffold_645 (62941-62801) | |
| 903-1482, gnl|bosTau2|chr29 (623020-623585) | |
| 903-1482, gnl|Hg17|chr11 (93184664-93185221) | |
| 903-1482, gnl|Mm7|chr9 (15101047-15100471) |
| Expressed library(ies): 14 entry(ies) | More info |
| Expressed library(ies): 14 entry(ies) | Help | Less info |
| liv (0.292569) | |
| ova (0.258264) | |
| gul (0.177588) | |
| sin (0.174948) | |
| nje (0.16592) | |
| mga (0.160205) | |
| lun (0.150489) | |
| ski (0.146735) | |
| spl (0.143184) | |
| thg (0.126791) | |
| eru (0.120048) | |
| ebs (0.118301) | |
| cty (0.10408) | |
| ldo (0.0970026) |
| Expressed library(ies): 14 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| liv (0.292569) | |
| ova (0.258264) | |
| gul (0.177588) | |
| sin (0.174948) | |
| nje (0.16592) | |
| mga (0.160205) | |
| lun (0.150489) | |
| ski (0.146735) | |
| spl (0.143184) | |
| thg (0.126791) | |
| eru (0.120048) | |
| ebs (0.118301) | |
| cty (0.10408) | |
| ldo (0.0970026) |