Non-Coding RNA Search

Ss1.1-Pig4-TMW8064M23.3

Sequence:


               
               AAAAAAAAAAAAAAAAGAATGATTTCCCTAGTTTGTTATTGGATTTTTTTTTTCAGATCA
TTTTAATAAGAAAGCAGGAACATGGAGAAATCAGTGTCGGTACAGGCAAAGAATTTATCA
AAGGAGTAAGAGTAGCTTGGTTGTCACATGGTGTTTCTGGAAGTGTTTGGCTTGGCTAAT
GGAGCAGTCCATATAATACTACTCTTAAAAGAACAAAAAGTCTCATTTTAAGTAATATTT
CTTCTTAAGAGAAAAAGGCTTAGATAGAATTGGATTTTATTAATATTAATTTAATGCTAT
TAGCAATCTCCAGATACTATTTATGGAAAGACCAAAGTACACAATTCTGAGTAATACAGA
AGAAATTTTAAATGGTGTAGTCATGTTGAAAATAAATGTTGATGAGCCCTGGTATGGTGG
TGTCAGCTTCCTTGGAGAGTAGTTCATTAGTCACGTGAATAATAATATCTGCATATTGGA
TTGCTATTCAGGTAACATAGTAAAATGACGCCAGAAGATTGTTAAAAAGTTGAGATATAT
TTCCAGTAGAAAACATATATCTCTGAATGAATATTTCCTTGATGATATTGGTTTCTACAC
ATACATAATTGACTGCCTTTATGCATCCATTTGCTATTCAATAAGTATGACAATTATAGG
TAACTTAATTTTCTATTTCTTTCTGTGGAAAACTGTTGCAGACCTAATACCTAACTTCAA
AACAAAATATTTTCTATCCTGACCATTGATTTAAATACCAAAGAAGATGGGGAAGCTGAA
GTTTGGATATGATTCTTATGTTTTTTATTAGAAAACTGTCTTCAAGTTTATTTTACTAAA
TAAACATAATAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAAAAAAAAAAAAAAGAATGATTTCCCTAGTTTGTTATTGGATTTTTTTTTTCAGATCA
TTTTAATAAGAAAGCAGGAACATGGAGAAATCAGTGTCGGTACAGGCAAAGAATTTATCA
AAGGAGTAAGAGTAGCTTGGTTGTCACATGGTGTTTCTGGAAGTGTTTGGCTTGGCTAAT
GGAGCAGTCCATATAATACTACTCTTAAAAGAACAAAAAGTCTCATTTTAAGTAATATTT
CTTCTTAAGAGAAAAAGGCTTAGATAGAATTGGATTTTATTAATATTAATTTAATGCTAT
TAGCAATCTCCAGATACTATTTATGGAAAGACCAAAGTACACAATTCTGAGTAATACAGA
AGAAATTTTAAATGGTGTAGTCATGTTGAAAATAAATGTTGATGAGCCCTGGTATGGTGG
TGTCAGCTTCCTTGGAGAGTAGTTCATTAGTCACGTGAATAATAATATCTGCATATTGGA
TTGCTATTCAGGTAACATAGTAAAATGACGCCAGAAGATTGTTAAAAAGTTGAGATATAT
TTCCAGTAGAAAACATATATCTCTGAATGAATATTTCCTTGATGATATTGGTTTCTACAC
ATACATAATTGACTGCCTTTATGCATCCATTTGCTATTCAATAAGTATGACAATTATAGG
TAACTTAATTTTCTATTTCTTTCTGTGGAAAACTGTTGCAGACCTAATACCTAACTTCAA
AACAAAATATTTTCTATCCTGACCATTGATTTAAATACCAAAGAAGATGGGGAAGCTGAA
GTTTGGATATGATTCTTATGTTTTTTATTAGAAAACTGTCTTCAAGTTTATTTTACTAAA
TAAACATAATAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               66-852, gnl|bosTau2|chr9 (16615300-16616062)
               

               
               66-852, gnl|Hg17|chr6 (116865335-116866128)
               

               
               66-852, gnl|Mm7|chr10 (33932738-33932040)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               66-852, gnl|bosTau2|chr9 (16615300-16616062)
               

               
               66-852, gnl|Hg17|chr6 (116865335-116866128)
               

               
               66-852, gnl|Mm7|chr10 (33932738-33932040)

Expressed library(ies): 9 entry(ies)

More info

Expressed library(ies): 9 entry(ies)

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               ret (0.901133)
               

               
               ova (0.387397)
               

               
               aor (0.195274)
               

               
               mga (0.160205)
               

               
               bfe (0.149858)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               kid (0.129735)
               

               
               tra (0.123092)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ret (0.901133)
               

               
               ova (0.387397)
               

               
               aor (0.195274)
               

               
               mga (0.160205)
               

               
               bfe (0.149858)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               kid (0.129735)
               

               
               tra (0.123092)

	66-852, gnl\|bosTau2\|chr9 (16615300-16616062)
	66-852, gnl\|Hg17\|chr6 (116865335-116866128)
	66-852, gnl\|Mm7\|chr10 (33932738-33932040)

	ret (0.901133)
	ova (0.387397)
	aor (0.195274)
	mga (0.160205)
	bfe (0.149858)
	ski (0.146735)
	liv (0.146284)
	kid (0.129735)
	tra (0.123092)