Ss1.1-Pig4-TMW8064N03.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GAGGTGGCTGAGGTATTGATTGGTTATATGTGTCCCTGATAAACAAAGGGGGAGGATAAG GTGCTCCTTCATGGAAGAGAGGCGGTGGTTTGGAAGTCCACAGGCTTTCGGCCAAGCTCA GCTCGGGAGGTGGGACAGGAGAAGGGACATCAGGAACAGCACCATTCACTTCCCGCTTCA CTTCTGTCCCTGCTTGGAATGTATTACTTTGGAGCTGCATGGCTTCAGGTTTATCCTTAT ATTCCCTTTTGGGAAATATTGTCACAGGGATCCCATGGGGCCCAAACCTTTTGGACAGAT CCATCAGGACCCCCGAGAAGAGCTTCTCCCCGAGGCGGAACGACACGACGAGCGCGTCCT CAATGATGTGGTCCAGCGTGACCCGCACCTCCGAGCCGGGGATCAGTTGCGACACCGCGG AGTCCCCGCCCGCCGGCGGCACGAGCGCAGGGGCTGCTGGCTGGGGCAGCGGTAGTTCCT GGCGCTCCTCGGGAGCTGGGGGCTGCTCGGGCGGCGGTACAGGGGAAGGTGGAAGGTCAG GCCCCTCCTGAGACGCGGCTGCCGTCAGCTCCACAACACCGGCAGGCAGTTCGTCCGCCT CCAGCTCCAGCTCCGCCGCCTCCGGGCTGCAGGCGAGCTCCCCCGGCGGCGGCGGTGGCG GCGGGAGCGGGGGCTCGTCGGCCTGAGGAGAGGACTGCTGCCCGTCGGCCTCGGCGTCCG GCACAGATGCTTCAGTGGCCGTGACCGGGAGCGGGTCAGTGCCGGCCTCGCTGCCGGGGA TGGGCTCCATCTCCGGCTCGGCCTCGCCGGCGCCCCCCTCCCCGGGGGACGCTGCAGTCG CTGCCGCCTCTGCAGCCACAGCCGCCATTTTCTTCCTGGCTTCTCCCTCCCTCGAGCCGC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GAGGTGGCTGAGGTATTGATTGGTTATATGTGTCCCTGATAAACAAAGGGGGAGGATAAG GTGCTCCTTCATGGAAGAGAGGCGGTGGTTTGGAAGTCCACAGGCTTTCGGCCAAGCTCA GCTCGGGAGGTGGGACAGGAGAAGGGACATCAGGAACAGCACCATTCACTTCCCGCTTCA CTTCTGTCCCTGCTTGGAATGTATTACTTTGGAGCTGCATGGCTTCAGGTTTATCCTTAT ATTCCCTTTTGGGAAATATTGTCACAGGGATCCCATGGGGCCCAAACCTTTTGGACAGAT CCATCAGGACCCCCGAGAAGAGCTTCTCCCCGAGGCGGAACGACACGACGAGCGCGTCCT CAATGATGTGGTCCAGCGTGACCCGCACCTCCGAGCCGGGGATCAGTTGCGACACCGCGG AGTCCCCGCCCGCCGGCGGCACGAGCGCAGGGGCTGCTGGCTGGGGCAGCGGTAGTTCCT GGCGCTCCTCGGGAGCTGGGGGCTGCTCGGGCGGCGGTACAGGGGAAGGTGGAAGGTCAG GCCCCTCCTGAGACGCGGCTGCCGTCAGCTCCACAACACCGGCAGGCAGTTCGTCCGCCT CCAGCTCCAGCTCCGCCGCCTCCGGGCTGCAGGCGAGCTCCCCCGGCGGCGGCGGTGGCG GCGGGAGCGGGGGCTCGTCGGCCTGAGGAGAGGACTGCTGCCCGTCGGCCTCGGCGTCCG GCACAGATGCTTCAGTGGCCGTGACCGGGAGCGGGTCAGTGCCGGCCTCGCTGCCGGGGA TGGGCTCCATCTCCGGCTCGGCCTCGCCGGCGCCCCCCTCCCCGGGGGACGCTGCAGTCG CTGCCGCCTCTGCAGCCACAGCCGCCATTTTCTTCCTGGCTTCTCCCTCCCTCGAGCCGC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 160-291, - strand, RNAz p=0.958098 | |
| 161-291, + strand, RNAz p=0.994898 | |
| 198-291, - strand, RNAz p=0.50673 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 160-291, - strand, RNAz p=0.958098 | |
| 161-291, + strand, RNAz p=0.994898 | |
| 198-291, - strand, RNAz p=0.50673 |
| Aligned organism(s): 32 entry(ies) | More info |
| Aligned organism(s): 32 entry(ies) | Help | Less info |
| 1-291, gnl|bosTau2|chr7 (48582331-48582041) | |
| 1-291, gnl|canFam2|chr4 (53782153-53782334) | |
| 1-291, gnl|canFam2|chr4 (53782438-53782141) | |
| 1-291, gnl|danRer3|chr21 (19938954-19938724) | |
| 1-291, gnl|danRer3|chr21 (19938621-19938964) | |
| 1-291, gnl|dasNov1|scaffold_123008 (3283-3429) | |
| 1-291, gnl|dasNov1|scaffold_1379 (77901-78178) | |
| 1-291, gnl|echTel1|scaffold_308717 (41596-41427) | |
| 1-291, gnl|echTel1|scaffold_308717 (41323-41606) | |
| 1-291, gnl|fr1|chrUn (218093659-218093809) | |
| 1-291, gnl|fr1|chrUn (218093911-218093657) | |
| 1-291, gnl|galGal2|chr13 (1657373-1657192) | |
| 1-291, gnl|galGal2|chr13 (1657088-1657384) | |
| 1-291, gnl|hg17|chr13 (80127534-80127711) | |
| 1-291, gnl|hg17|chr5 (159453366-159453663) | |
| 1-291, gnl|Hg17|chr5 (159453364-159453654) | |
| 1-291, gnl|mm7|chr11 (43661288-43661454) | |
| 1-291, gnl|mm7|chr11 (43661558-43661276) | |
| 1-291, gnl|Mm7|chr11 (43661558-43661283) | |
| 1-291, gnl|monDom2|scaffold_6 (44777679-44777860) | |
| 1-291, gnl|monDom2|scaffold_6 (44777964-44777673) | |
| 1-291, gnl|oryCun1|scaffold_209017 (64311-64492) | |
| 1-291, gnl|oryCun1|scaffold_209017 (64596-64299) | |
| 1-291, gnl|panTro1|chr14 (62829408-62829585) | |
| 1-291, gnl|panTro1|chr4 (166625164-166625461) | |
| 1-291, gnl|rheMac2|chr17 (61130668-61130844) | |
| 1-291, gnl|rheMac2|chr6 (156481229-156481526) | |
| 1-291, gnl|rn3|chr10 (28813415-28813581) | |
| 1-291, gnl|rn3|chr10 (28813685-28813403) | |
| 1-291, gnl|tetNig1|chr7 (10094559-10094290) | |
| 1-291, gnl|xenTro1|scaffold_951 (233170-232992) | |
| 1-291, gnl|xenTro1|scaffold_951 (232888-233178) |
| Aligned organism(s): 32 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-291, gnl|bosTau2|chr7 (48582331-48582041) | |
| 1-291, gnl|canFam2|chr4 (53782153-53782334) | |
| 1-291, gnl|canFam2|chr4 (53782438-53782141) | |
| 1-291, gnl|danRer3|chr21 (19938954-19938724) | |
| 1-291, gnl|danRer3|chr21 (19938621-19938964) | |
| 1-291, gnl|dasNov1|scaffold_123008 (3283-3429) | |
| 1-291, gnl|dasNov1|scaffold_1379 (77901-78178) | |
| 1-291, gnl|echTel1|scaffold_308717 (41596-41427) | |
| 1-291, gnl|echTel1|scaffold_308717 (41323-41606) | |
| 1-291, gnl|fr1|chrUn (218093659-218093809) | |
| 1-291, gnl|fr1|chrUn (218093911-218093657) | |
| 1-291, gnl|galGal2|chr13 (1657373-1657192) | |
| 1-291, gnl|galGal2|chr13 (1657088-1657384) | |
| 1-291, gnl|hg17|chr13 (80127534-80127711) | |
| 1-291, gnl|hg17|chr5 (159453366-159453663) | |
| 1-291, gnl|Hg17|chr5 (159453364-159453654) | |
| 1-291, gnl|mm7|chr11 (43661288-43661454) | |
| 1-291, gnl|mm7|chr11 (43661558-43661276) | |
| 1-291, gnl|Mm7|chr11 (43661558-43661283) | |
| 1-291, gnl|monDom2|scaffold_6 (44777679-44777860) | |
| 1-291, gnl|monDom2|scaffold_6 (44777964-44777673) | |
| 1-291, gnl|oryCun1|scaffold_209017 (64311-64492) | |
| 1-291, gnl|oryCun1|scaffold_209017 (64596-64299) | |
| 1-291, gnl|panTro1|chr14 (62829408-62829585) | |
| 1-291, gnl|panTro1|chr4 (166625164-166625461) | |
| 1-291, gnl|rheMac2|chr17 (61130668-61130844) | |
| 1-291, gnl|rheMac2|chr6 (156481229-156481526) | |
| 1-291, gnl|rn3|chr10 (28813415-28813581) | |
| 1-291, gnl|rn3|chr10 (28813685-28813403) | |
| 1-291, gnl|tetNig1|chr7 (10094559-10094290) | |
| 1-291, gnl|xenTro1|scaffold_951 (233170-232992) | |
| 1-291, gnl|xenTro1|scaffold_951 (232888-233178) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cki (0.165235) |