Ss1.1-Pig4-TMW8064N14.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCGGCCGCCTCCTGTACAGGTTGGCAGACCTCATGGAACAGCACCAGGAGGAGCTGGCCA CCATCGAGGCGCTGGATGCAGGTGCTGTCTACACACTGGCCCTGAAGACCCACGTGGGCA TGTCCATCCAGACCTTCCGCTACTTCGCTGGCTGGTGCGACAAGATCCAGGGCAGCACCA TCCCCATCAACCAGGCCAGACCCAACCGGAACCTGACCTTGACCAGGAGGGAGCCCATCG GGGTCTGTGGCATTGTCATCCCCTGGAACTACCCCCTGATGATGCTGTCCTGGAAGACGG CCGCCTGCCTGGCTGCTGGAAACACAGTGGTGATCAAGCCCGCCCAGGTGACCCCGCTCA CAGCCTTGAAGTTTGCAGAGCTGACCCTGAAGGCCGGCATTCCCAAGGGTGTGGTTAACA TCCTGCCAGGATCTGGCTCACTGGTCGGCCAGAGGCTCTCGGACCATCCCGATGTGCGGA AAATTGGGTTCACGGGCTCCACCGAGGTGGGAAAGCACATCATGAAAAGCTGTGCCCTGA GCAATGTGAAGAAGGTCTCCCTAGAGCTGGGCGGAAAGTCTCCCCTCATCATCTTCTCCG ACTGTGACCTCAGCAGGGCTGTGCAGATGGGGATGAGCGCAGTGTTCTTCAACAAAGGTG AGAACTGCATCGCAGCCGGCCGGCTCTTTGTGGAGAACTCGATTCATGACCAGTTTGTGC AGAAGGTGGTGGAAGAGGTGGGGAAGATGAAGATCGGCAACCCTCTCGACCGGGACACCA ACCACGGGCCGCAGAACCACCAGGCCCACCTCCGGAAGCTGGTGGAGTACTGCCAGCGTG GCGTGAAGGAGGGGGCCACGCTGGTCTGCGGGGGGAACCAAGTCCCTCGGCCAGGCTTCT TCTTTGAGCCGACCGTCTTCACGGACGTGGAGGACCACATGTTCATAGCCCGGGAGGAGT CCTTCGGGCCCATCATGATCATCTCCCGATTTGCTGACGGCGACATGGACACCGTGCTGT CTCGGGCCAACGCCACAGAGTTTGGCCTGGCCTCTGGTGTCTTCACCAGGGACATCAATA AGGCCCTGTACGTCAGCGACAAGCTGGAGGCGGGCACAGTGTTCATCAACACCTACAACA AGACCGACGTGGCCGCCCCCTTTGGAGGGTTCAAGCAGTCCGGATTTGGCAAAGACCTGG GAGAGGCAGCCCTGAATGAGTACCTGCGGGTCAAGACGGTCACCTTCGAGTACTGAAGAC CAGCCTCCCTCCTGTGGGCTCGGCCTCCCAGCACCCAGCCCCGCGCCCTGAATGTGGCGG GAGCCCCCTGCCCCCTCTGGGGCCCTGTCCAGTCAGAGTGACCTCAGCTGGGTGAGCAAC TGGCCCCGTGCAAATAAAGGTTCTGACCAGTGCAGC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCGGCCGCCTCCTGTACAGGTTGGCAGACCTCATGGAACAGCACCAGGAGGAGCTGGCCA CCATCGAGGCGCTGGATGCAGGTGCTGTCTACACACTGGCCCTGAAGACCCACGTGGGCA TGTCCATCCAGACCTTCCGCTACTTCGCTGGCTGGTGCGACAAGATCCAGGGCAGCACCA TCCCCATCAACCAGGCCAGACCCAACCGGAACCTGACCTTGACCAGGAGGGAGCCCATCG GGGTCTGTGGCATTGTCATCCCCTGGAACTACCCCCTGATGATGCTGTCCTGGAAGACGG CCGCCTGCCTGGCTGCTGGAAACACAGTGGTGATCAAGCCCGCCCAGGTGACCCCGCTCA CAGCCTTGAAGTTTGCAGAGCTGACCCTGAAGGCCGGCATTCCCAAGGGTGTGGTTAACA TCCTGCCAGGATCTGGCTCACTGGTCGGCCAGAGGCTCTCGGACCATCCCGATGTGCGGA AAATTGGGTTCACGGGCTCCACCGAGGTGGGAAAGCACATCATGAAAAGCTGTGCCCTGA GCAATGTGAAGAAGGTCTCCCTAGAGCTGGGCGGAAAGTCTCCCCTCATCATCTTCTCCG ACTGTGACCTCAGCAGGGCTGTGCAGATGGGGATGAGCGCAGTGTTCTTCAACAAAGGTG AGAACTGCATCGCAGCCGGCCGGCTCTTTGTGGAGAACTCGATTCATGACCAGTTTGTGC AGAAGGTGGTGGAAGAGGTGGGGAAGATGAAGATCGGCAACCCTCTCGACCGGGACACCA ACCACGGGCCGCAGAACCACCAGGCCCACCTCCGGAAGCTGGTGGAGTACTGCCAGCGTG GCGTGAAGGAGGGGGCCACGCTGGTCTGCGGGGGGAACCAAGTCCCTCGGCCAGGCTTCT TCTTTGAGCCGACCGTCTTCACGGACGTGGAGGACCACATGTTCATAGCCCGGGAGGAGT CCTTCGGGCCCATCATGATCATCTCCCGATTTGCTGACGGCGACATGGACACCGTGCTGT CTCGGGCCAACGCCACAGAGTTTGGCCTGGCCTCTGGTGTCTTCACCAGGGACATCAATA AGGCCCTGTACGTCAGCGACAAGCTGGAGGCGGGCACAGTGTTCATCAACACCTACAACA AGACCGACGTGGCCGCCCCCTTTGGAGGGTTCAAGCAGTCCGGATTTGGCAAAGACCTGG GAGAGGCAGCCCTGAATGAGTACCTGCGGGTCAAGACGGTCACCTTCGAGTACTGAAGAC CAGCCTCCCTCCTGTGGGCTCGGCCTCCCAGCACCCAGCCCCGCGCCCTGAATGTGGCGG GAGCCCCCTGCCCCCTCTGGGGCCCTGTCCAGTCAGAGTGACCTCAGCTGGGTGAGCAAC TGGCCCCGTGCAAATAAAGGTTCTGACCAGTGCAGC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 779-1158, - strand, RNAz p=0.902979 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 779-1158, - strand, RNAz p=0.902979 |
| Aligned organism(s): 76 entry(ies) | More info |
| Aligned organism(s): 76 entry(ies) | Help | Less info |
| 4-171, gnl|bosTau2|chr7 (16786529-16786694) | |
| 4-171, gnl|canFam2|chr20 (3317201-3317387) | |
| 4-171, gnl|danRer3|chr2 (44998960-44998800) | |
| 4-171, gnl|dasNov1|scaffold_40667 (10152-9965) | |
| 4-171, gnl|echTel1|scaffold_280535 (83234-83056) | |
| 4-171, gnl|fr1|chrUn (245635625-245635445) | |
| 4-171, gnl|hg17|chr3 (127332904-127333086) | |
| 4-171, gnl|Hg17|chr3 (127333089-127332924) | |
| 4-171, gnl|loxAfr1|scaffold_37922 (7540-7357) | |
| 4-171, gnl|mm7|chr6 (90655488-90655311) | |
| 4-171, gnl|Mm7|chr6 (90655301-90655464) | |
| 4-171, gnl|monDom2|scaffold_5 (44137824-44137654) | |
| 4-171, gnl|panTro1|chr2 (129181975-129182157) | |
| 4-171, gnl|rheMac2|chr2 (45910730-45910911) | |
| 4-171, gnl|rn3|chr7 (22450742-22450584) | |
| 4-171, gnl|tetNig1|chrUn_random (48673903-48673721) | |
| 4-171, gnl|xenTro1|scaffold_368 (1185705-1185530) | |
| 234-349, gnl|bosTau2|chr7 (16789145-16789260) | |
| 234-349, gnl|canFam2|chr20 (3312764-3312909) | |
| 234-349, gnl|danRer3|chr2 (45002162-45002018) | |
| 234-349, gnl|dasNov1|scaffold_15440 (43159-43272) | |
| 234-349, gnl|echTel1|scaffold_213242 (3770-3625) | |
| 234-349, gnl|fr1|chrUn (245636008-245635885) | |
| 234-349, gnl|hg17|chr3 (127327148-127327293) | |
| 234-349, gnl|Hg17|chr3 (127327271-127327155) | |
| 234-349, gnl|loxAfr1|scaffold_37922 (13451-13320) | |
| 234-349, gnl|mm7|chr6 (90659277-90659133) | |
| 234-349, gnl|Mm7|chr6 (90659153-90659268) | |
| 234-349, gnl|monDom2|scaffold_5 (44141593-44141453) | |
| 234-349, gnl|oryCun1|scaffold_29268 (588-729) | |
| 234-349, gnl|panTro1|chr2 (129175868-129176013) | |
| 234-349, gnl|rheMac2|chr2 (45904986-45905131) | |
| 234-349, gnl|rn3|chr7 (22453608-22453494) | |
| 234-349, gnl|tetNig1|chrUn_random (48674668-48674543) | |
| 234-349, gnl|xenTro1|scaffold_368 (1187041-1186914) | |
| 528-633, gnl|bosTau2|chr7 (16794717-16794822) | |
| 528-633, gnl|canFam2|chr20 (3296859-3296983) | |
| 528-633, gnl|danRer3|chr2 (45004529-45004412) | |
| 528-633, gnl|dasNov1|scaffold_15440 (34521-34637) | |
| 528-633, gnl|echTel1|scaffold_213242 (11882-11758) | |
| 528-633, gnl|fr1|chrUn (245636561-245636437) | |
| 528-633, gnl|galGal2|chr1 (51025532-51025416) | |
| 528-633, gnl|hg17|chr3 (127316090-127316214) | |
| 528-633, gnl|Hg17|chr3 (127316199-127316094) | |
| 528-633, gnl|loxAfr1|scaffold_11671 (50469-50589) | |
| 528-633, gnl|mm7|chr6 (90669531-90669408) | |
| 528-633, gnl|Mm7|chr6 (90669421-90669526) | |
| 528-633, gnl|monDom2|scaffold_5 (44153002-44152877) | |
| 528-633, gnl|oryCun1|scaffold_172451 (26031-26139) | |
| 528-633, gnl|panTro1|chr2 (129164771-129164895) | |
| 528-633, gnl|rheMac2|chr2 (45893887-45894011) | |
| 528-633, gnl|rn3|chr7 (22458199-22458071) | |
| 528-633, gnl|tetNig1|chrUn_random (48675223-48675105) | |
| 528-633, gnl|xenTro1|scaffold_368 (1188181-1188049) | |
| 728-895, gnl|bosTau2|chr7 (16795506-16795673) | |
| 728-895, gnl|Hg17|chr3 (127311651-127311484) | |
| 728-895, gnl|Mm7|chr6 (90673167-90673338) | |
| 1000-1211, gnl|bosTau2|chr7 (16797218-16797429) | |
| 1000-1211, gnl|canFam2|chr20 (3288989-3289240) | |
| 1000-1211, gnl|danRer3|chr2 (45010248-45009996) | |
| 1000-1211, gnl|dasNov1|scaffold_17611 (5202-4998) | |
| 1000-1211, gnl|echTel1|scaffold_169070 (4124-4398) | |
| 1000-1211, gnl|fr1|chrUn (245637761-245637552) | |
| 1000-1211, gnl|galGal2|chr1 (51029843-51029612) | |
| 1000-1211, gnl|hg17|chr3 (127307238-127307521) | |
| 1000-1211, gnl|Hg17|chr3 (127307467-127307256) | |
| 1000-1211, gnl|loxAfr1|scaffold_136153 (4191-3930) | |
| 1000-1211, gnl|mm7|chr6 (90677101-90676832) | |
| 1000-1211, gnl|Mm7|chr6 (90676870-90677081) | |
| 1000-1211, gnl|monDom2|scaffold_5 (44164776-44164544) | |
| 1000-1211, gnl|oryCun1|scaffold_89157 (4061-4331) | |
| 1000-1211, gnl|panTro1|chr2 (129155914-129156197) | |
| 1000-1211, gnl|rheMac2|chr2 (45885173-45885454) | |
| 1000-1211, gnl|rn3|chr7 (22467967-22467719) | |
| 1000-1211, gnl|tetNig1|chrUn_random (48676453-48676211) | |
| 1000-1211, gnl|xenTro1|scaffold_434 (734735-734978) |
| Aligned organism(s): 76 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 4-171, gnl|bosTau2|chr7 (16786529-16786694) | |
| 4-171, gnl|canFam2|chr20 (3317201-3317387) | |
| 4-171, gnl|danRer3|chr2 (44998960-44998800) | |
| 4-171, gnl|dasNov1|scaffold_40667 (10152-9965) | |
| 4-171, gnl|echTel1|scaffold_280535 (83234-83056) | |
| 4-171, gnl|fr1|chrUn (245635625-245635445) | |
| 4-171, gnl|hg17|chr3 (127332904-127333086) | |
| 4-171, gnl|Hg17|chr3 (127333089-127332924) | |
| 4-171, gnl|loxAfr1|scaffold_37922 (7540-7357) | |
| 4-171, gnl|mm7|chr6 (90655488-90655311) | |
| 4-171, gnl|Mm7|chr6 (90655301-90655464) | |
| 4-171, gnl|monDom2|scaffold_5 (44137824-44137654) | |
| 4-171, gnl|panTro1|chr2 (129181975-129182157) | |
| 4-171, gnl|rheMac2|chr2 (45910730-45910911) | |
| 4-171, gnl|rn3|chr7 (22450742-22450584) | |
| 4-171, gnl|tetNig1|chrUn_random (48673903-48673721) | |
| 4-171, gnl|xenTro1|scaffold_368 (1185705-1185530) | |
| 234-349, gnl|bosTau2|chr7 (16789145-16789260) | |
| 234-349, gnl|canFam2|chr20 (3312764-3312909) | |
| 234-349, gnl|danRer3|chr2 (45002162-45002018) | |
| 234-349, gnl|dasNov1|scaffold_15440 (43159-43272) | |
| 234-349, gnl|echTel1|scaffold_213242 (3770-3625) | |
| 234-349, gnl|fr1|chrUn (245636008-245635885) | |
| 234-349, gnl|hg17|chr3 (127327148-127327293) | |
| 234-349, gnl|Hg17|chr3 (127327271-127327155) | |
| 234-349, gnl|loxAfr1|scaffold_37922 (13451-13320) | |
| 234-349, gnl|mm7|chr6 (90659277-90659133) | |
| 234-349, gnl|Mm7|chr6 (90659153-90659268) | |
| 234-349, gnl|monDom2|scaffold_5 (44141593-44141453) | |
| 234-349, gnl|oryCun1|scaffold_29268 (588-729) | |
| 234-349, gnl|panTro1|chr2 (129175868-129176013) | |
| 234-349, gnl|rheMac2|chr2 (45904986-45905131) | |
| 234-349, gnl|rn3|chr7 (22453608-22453494) | |
| 234-349, gnl|tetNig1|chrUn_random (48674668-48674543) | |
| 234-349, gnl|xenTro1|scaffold_368 (1187041-1186914) | |
| 528-633, gnl|bosTau2|chr7 (16794717-16794822) | |
| 528-633, gnl|canFam2|chr20 (3296859-3296983) | |
| 528-633, gnl|danRer3|chr2 (45004529-45004412) | |
| 528-633, gnl|dasNov1|scaffold_15440 (34521-34637) | |
| 528-633, gnl|echTel1|scaffold_213242 (11882-11758) | |
| 528-633, gnl|fr1|chrUn (245636561-245636437) | |
| 528-633, gnl|galGal2|chr1 (51025532-51025416) | |
| 528-633, gnl|hg17|chr3 (127316090-127316214) | |
| 528-633, gnl|Hg17|chr3 (127316199-127316094) | |
| 528-633, gnl|loxAfr1|scaffold_11671 (50469-50589) | |
| 528-633, gnl|mm7|chr6 (90669531-90669408) | |
| 528-633, gnl|Mm7|chr6 (90669421-90669526) | |
| 528-633, gnl|monDom2|scaffold_5 (44153002-44152877) | |
| 528-633, gnl|oryCun1|scaffold_172451 (26031-26139) | |
| 528-633, gnl|panTro1|chr2 (129164771-129164895) | |
| 528-633, gnl|rheMac2|chr2 (45893887-45894011) | |
| 528-633, gnl|rn3|chr7 (22458199-22458071) | |
| 528-633, gnl|tetNig1|chrUn_random (48675223-48675105) | |
| 528-633, gnl|xenTro1|scaffold_368 (1188181-1188049) | |
| 728-895, gnl|bosTau2|chr7 (16795506-16795673) | |
| 728-895, gnl|Hg17|chr3 (127311651-127311484) | |
| 728-895, gnl|Mm7|chr6 (90673167-90673338) | |
| 1000-1211, gnl|bosTau2|chr7 (16797218-16797429) | |
| 1000-1211, gnl|canFam2|chr20 (3288989-3289240) | |
| 1000-1211, gnl|danRer3|chr2 (45010248-45009996) | |
| 1000-1211, gnl|dasNov1|scaffold_17611 (5202-4998) | |
| 1000-1211, gnl|echTel1|scaffold_169070 (4124-4398) | |
| 1000-1211, gnl|fr1|chrUn (245637761-245637552) | |
| 1000-1211, gnl|galGal2|chr1 (51029843-51029612) | |
| 1000-1211, gnl|hg17|chr3 (127307238-127307521) | |
| 1000-1211, gnl|Hg17|chr3 (127307467-127307256) | |
| 1000-1211, gnl|loxAfr1|scaffold_136153 (4191-3930) | |
| 1000-1211, gnl|mm7|chr6 (90677101-90676832) | |
| 1000-1211, gnl|Mm7|chr6 (90676870-90677081) | |
| 1000-1211, gnl|monDom2|scaffold_5 (44164776-44164544) | |
| 1000-1211, gnl|oryCun1|scaffold_89157 (4061-4331) | |
| 1000-1211, gnl|panTro1|chr2 (129155914-129156197) | |
| 1000-1211, gnl|rheMac2|chr2 (45885173-45885454) | |
| 1000-1211, gnl|rn3|chr7 (22467967-22467719) | |
| 1000-1211, gnl|tetNig1|chrUn_random (48676453-48676211) | |
| 1000-1211, gnl|xenTro1|scaffold_434 (734735-734978) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cli (0.91687) | |
| nmm (0.132802) | |
| cov (0.132153) |