Ss1.1-Pig4-TMW8064N15.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTTCAGGTTTAGCAGCCACTGTGACTATTACCCATCTGTTAAAAGCAGGAGACCAGATTA TTTCTATGGATGATGTATACGGAGGTACAAATAGGTACTTTAGGCAGGTTGCAGCTGAAT TTGGTCTAAAGATTTCTTTTGTCGATTGTTCCAAAAGCAAATTGCTAGAGGCAGCTATTA CACCAGAAACCAAGCTTGTTTGGATTGAAACACCCACAAACCCTATCTTGAAGATGATTG ACATTGAAGCCTGTGCACAGATAGTCCATAAACATGGAGATATTATTTTGGTTGTGGATA ACACTTTTATGTCTGCATATTTCCAGCGGCCTTTGGCTCTGGGAGCTGATATTTGTATGT ATTCAGCAACAAAATATATGAATGGCCACAGTGATGTTGTAATGGGCTTAGTGTCACTTA ATTCTGAGACTCTTCATAGTAGGCTCCGTTTCTTGCAAAATTCTCTTGGAGCAGTTCCGT CTCCTATTGACTGCTACCTCTGCAATCGAGGTCTGAAGACTCTACAGGTCCGCATGGAGA AGCATTTTGAAAATGGAATGGCAGTTGCTCAGTTTTTGGAATCGCATCCTCTGGTAGAAA AAGTTATTTATCCTGGGTTGCCCTCTCATCCCCAGCATGAGTTGGCAAAGCGTCAGTGCA CAGGTTGCCCTGGGATGATCTCCTTTTATATCAAGGGCTCCCTTCATCATGCTGAGACCT TCCTCAAGAGCCTGAAGTTATTTACTCTGGCTGAGAGTTTGGGAGGATATGAAAGTCTTG CTGAGCTTCCGGCAATCATGACCCATTCATCTGTGCCTAAGAGTGACAGAGAAGTCCTTG GAATTAGAGACACACTGATTCGACTCTCTGTGGGCTTAGAGGATAAACAAGACCTAATGG ACGATCTAGATCAAGCTTTGAAGGCAGCGCATCCTACAAATGCAAGTCACAACTAGCATT CCAGAATTGCTGTTAGAAGTTGCTTCCTGAGAAGACCAAAACTTCTGAATAATTGAATGG ACCATTAAAGAGCCTTTGCACAATTTTCAGGTGAAAATTCCAAGGCACCTCATAACCTTT CACAACTATAATCTTCTAGAGATCATCCCTGATAAAAAGTTTCCCTTTTGTAATTGACAG ATAATTCTGTTAATGTCTTTTTGTTAATTTGTGTCTGAAGTAGGTGATATTTGTGCTGCT GTTGGAGATTGTGTTCTTTTTTCAAGCTTAAGGTTTATATTGATCATGTTTACAGTATAG TGGTAATTCATTTTGATGTTTTCTGAGGAGTTTAAATTATTAAATGAATATTCTTAAATC TAGTGTGATTTTTGTATATTGTTGGAAACAGCACTCAAAGTGATGGTTTACACTTAATTA CCATAAGCCAAAAATTAAATATCTGAAAAGTCTGTGAAATTCTACTGATTCAAGTTTGTA CAATTAAAAAAAATAAATATAATTATCAAATGCAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTTCAGGTTTAGCAGCCACTGTGACTATTACCCATCTGTTAAAAGCAGGAGACCAGATTA TTTCTATGGATGATGTATACGGAGGTACAAATAGGTACTTTAGGCAGGTTGCAGCTGAAT TTGGTCTAAAGATTTCTTTTGTCGATTGTTCCAAAAGCAAATTGCTAGAGGCAGCTATTA CACCAGAAACCAAGCTTGTTTGGATTGAAACACCCACAAACCCTATCTTGAAGATGATTG ACATTGAAGCCTGTGCACAGATAGTCCATAAACATGGAGATATTATTTTGGTTGTGGATA ACACTTTTATGTCTGCATATTTCCAGCGGCCTTTGGCTCTGGGAGCTGATATTTGTATGT ATTCAGCAACAAAATATATGAATGGCCACAGTGATGTTGTAATGGGCTTAGTGTCACTTA ATTCTGAGACTCTTCATAGTAGGCTCCGTTTCTTGCAAAATTCTCTTGGAGCAGTTCCGT CTCCTATTGACTGCTACCTCTGCAATCGAGGTCTGAAGACTCTACAGGTCCGCATGGAGA AGCATTTTGAAAATGGAATGGCAGTTGCTCAGTTTTTGGAATCGCATCCTCTGGTAGAAA AAGTTATTTATCCTGGGTTGCCCTCTCATCCCCAGCATGAGTTGGCAAAGCGTCAGTGCA CAGGTTGCCCTGGGATGATCTCCTTTTATATCAAGGGCTCCCTTCATCATGCTGAGACCT TCCTCAAGAGCCTGAAGTTATTTACTCTGGCTGAGAGTTTGGGAGGATATGAAAGTCTTG CTGAGCTTCCGGCAATCATGACCCATTCATCTGTGCCTAAGAGTGACAGAGAAGTCCTTG GAATTAGAGACACACTGATTCGACTCTCTGTGGGCTTAGAGGATAAACAAGACCTAATGG ACGATCTAGATCAAGCTTTGAAGGCAGCGCATCCTACAAATGCAAGTCACAACTAGCATT CCAGAATTGCTGTTAGAAGTTGCTTCCTGAGAAGACCAAAACTTCTGAATAATTGAATGG ACCATTAAAGAGCCTTTGCACAATTTTCAGGTGAAAATTCCAAGGCACCTCATAACCTTT CACAACTATAATCTTCTAGAGATCATCCCTGATAAAAAGTTTCCCTTTTGTAATTGACAG ATAATTCTGTTAATGTCTTTTTGTTAATTTGTGTCTGAAGTAGGTGATATTTGTGCTGCT GTTGGAGATTGTGTTCTTTTTTCAAGCTTAAGGTTTATATTGATCATGTTTACAGTATAG TGGTAATTCATTTTGATGTTTTCTGAGGAGTTTAAATTATTAAATGAATATTCTTAAATC TAGTGTGATTTTTGTATATTGTTGGAAACAGCACTCAAAGTGATGGTTTACACTTAATTA CCATAAGCCAAAAATTAAATATCTGAAAAGTCTGTGAAATTCTACTGATTCAAGTTTGTA CAATTAAAAAAAATAAATATAATTATCAAATGCAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 33 entry(ies) | More info |
| Aligned organism(s): 33 entry(ies) | Help | Less info |
| 193-326, gnl|bosTau2|chr3 (50273406-50273273) | |
| 193-326, gnl|canFam2|chr6 (78404279-78404127) | |
| 193-326, gnl|danRer3|chr6 (18313212-18313367) | |
| 193-326, gnl|dasNov1|scaffold_216524 (149-301) | |
| 193-326, gnl|echTel1|scaffold_232731 (533-380) | |
| 193-326, gnl|fr1|chrUn (33742653-33742792) | |
| 193-326, gnl|galGal2|chr8 (29237546-29237693) | |
| 193-326, gnl|hg17|chr1 (70601987-70602139) | |
| 193-326, gnl|Hg17|chr1 (70601987-70602120) | |
| 193-326, gnl|loxAfr1|scaffold_16642 (39729-39881) | |
| 193-326, gnl|mm7|chr3 (157821901-157821749) | |
| 193-326, gnl|Mm7|chr3 (157821899-157821766) | |
| 193-326, gnl|oryCun1|scaffold_207687 (1273-1120) | |
| 193-326, gnl|panTro1|chr1 (69166914-69167066) | |
| 193-326, gnl|rn3|chr2 (256088279-256088127) | |
| 193-326, gnl|tetNig1|chr1 (12448365-12448504) | |
| 193-326, gnl|xenTro1|scaffold_874 (455898-455748) | |
| 463-616, gnl|bosTau2|chr3 (50268624-50268471) | |
| 463-616, gnl|canFam2|chr6 (78398353-78398164) | |
| 463-616, gnl|danRer3|chr6 (18314621-18314805) | |
| 463-616, gnl|echTel1|scaffold_53981 (576-386) | |
| 463-616, gnl|fr1|chrUn (33743474-33743650) | |
| 463-616, gnl|galGal2|chr8 (29241361-29241555) | |
| 463-616, gnl|hg17|chr1 (70609776-70609968) | |
| 463-616, gnl|Hg17|chr1 (70609787-70609940) | |
| 463-616, gnl|loxAfr1|scaffold_16642 (45311-45503) | |
| 463-616, gnl|mm7|chr3 (157815651-157815459) | |
| 463-616, gnl|Mm7|chr3 (157815638-157815485) | |
| 463-616, gnl|oryCun1|scaffold_205727 (79720-79528) | |
| 463-616, gnl|panTro1|chr1 (69174050-69174242) | |
| 463-616, gnl|rn3|chr2 (256082384-256082192) | |
| 463-616, gnl|tetNig1|chr1 (12449134-12449300) | |
| 463-616, gnl|xenTro1|scaffold_874 (453460-453269) |
| Aligned organism(s): 33 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 193-326, gnl|bosTau2|chr3 (50273406-50273273) | |
| 193-326, gnl|canFam2|chr6 (78404279-78404127) | |
| 193-326, gnl|danRer3|chr6 (18313212-18313367) | |
| 193-326, gnl|dasNov1|scaffold_216524 (149-301) | |
| 193-326, gnl|echTel1|scaffold_232731 (533-380) | |
| 193-326, gnl|fr1|chrUn (33742653-33742792) | |
| 193-326, gnl|galGal2|chr8 (29237546-29237693) | |
| 193-326, gnl|hg17|chr1 (70601987-70602139) | |
| 193-326, gnl|Hg17|chr1 (70601987-70602120) | |
| 193-326, gnl|loxAfr1|scaffold_16642 (39729-39881) | |
| 193-326, gnl|mm7|chr3 (157821901-157821749) | |
| 193-326, gnl|Mm7|chr3 (157821899-157821766) | |
| 193-326, gnl|oryCun1|scaffold_207687 (1273-1120) | |
| 193-326, gnl|panTro1|chr1 (69166914-69167066) | |
| 193-326, gnl|rn3|chr2 (256088279-256088127) | |
| 193-326, gnl|tetNig1|chr1 (12448365-12448504) | |
| 193-326, gnl|xenTro1|scaffold_874 (455898-455748) | |
| 463-616, gnl|bosTau2|chr3 (50268624-50268471) | |
| 463-616, gnl|canFam2|chr6 (78398353-78398164) | |
| 463-616, gnl|danRer3|chr6 (18314621-18314805) | |
| 463-616, gnl|echTel1|scaffold_53981 (576-386) | |
| 463-616, gnl|fr1|chrUn (33743474-33743650) | |
| 463-616, gnl|galGal2|chr8 (29241361-29241555) | |
| 463-616, gnl|hg17|chr1 (70609776-70609968) | |
| 463-616, gnl|Hg17|chr1 (70609787-70609940) | |
| 463-616, gnl|loxAfr1|scaffold_16642 (45311-45503) | |
| 463-616, gnl|mm7|chr3 (157815651-157815459) | |
| 463-616, gnl|Mm7|chr3 (157815638-157815485) | |
| 463-616, gnl|oryCun1|scaffold_205727 (79720-79528) | |
| 463-616, gnl|panTro1|chr1 (69174050-69174242) | |
| 463-616, gnl|rn3|chr2 (256082384-256082192) | |
| 463-616, gnl|tetNig1|chr1 (12449134-12449300) | |
| 463-616, gnl|xenTro1|scaffold_874 (453460-453269) |
| Expressed library(ies): 14 entry(ies) | More info |
| Expressed library(ies): 14 entry(ies) | Help | Less info |
| kid (1.81629) | |
| lun (1.05342) | |
| sin (0.349895) | |
| cte (0.29274) | |
| col (0.195008) | |
| nep (0.183925) | |
| duo (0.172801) | |
| mga (0.160205) | |
| eli (0.151814) | |
| hlv (0.139256) | |
| lyg (0.133103) | |
| cov (0.132153) | |
| jej (0.0989218) | |
| eje (0.0988338) |
| Expressed library(ies): 14 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| kid (1.81629) | |
| lun (1.05342) | |
| sin (0.349895) | |
| cte (0.29274) | |
| col (0.195008) | |
| nep (0.183925) | |
| duo (0.172801) | |
| mga (0.160205) | |
| eli (0.151814) | |
| hlv (0.139256) | |
| lyg (0.133103) | |
| cov (0.132153) | |
| jej (0.0989218) | |
| eje (0.0988338) |