Ss1.1-Pig4-TMW8064N16.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGAGATCAAGGGCCAGCTGGTGAAACTGCTGTCTGTGCGTCTGTGCCCGCCAGTGTCTGG GCAGGCTGCCATGGATATCGTTGTGAACCCCCCGGTGCCAGGAGAGGAGTCCTTTGAGCA GTTCAGCAGGGAGAAAGAGTCCGTCTTGGGTAACCTGGCCAAAAAAGCCAAGCTGACAGA AGATTTGTTTAACCAAGTTCCGGGAATTCACTGCAACCCCCTGCAGGGTGCCATGTACGC CTTTCCTCGGATCTTCATCCCCACCAAAGCCATGGAGGCGGCTCAGGCCCATAAGATGGC CCCTGACATGTTCTACTGCATGAAGCTCCTGGAGGAGACGGGCATCTGTGTCGTGCCCGG CAGTGGCTTTGGGCAGAGGGAAGGCACCTACCACTTCAGAATGACCATTCTTCCTCCAGT GGAGAAGCTGAAGACAGTTCTCCAGAAAGTGAAGGACTTTCACATAAAGTTCCTGGAGAA GTACGCCTGAGGACTGCTCGGGCCCCTGAGGGAGACAGGGTCCTCGGCCTTCTTCCTGAC ATCCACCCAGCCCAGACCCAACTCGCCTCCCCCCGCGACTCTGCCTCAGGCCTTACAAAG GCCACTGGTCGCGCGTTCATTGTCATTTTGCCCCAGGAGACTTCTTTCTCTGTGCCTTGA TGTTGAGAGCACCTCTCTTCTGAGCAAATGTGAATTGGGGATATCTCAGAAGCCCTGTGT TTGGATGCAGCCAAAGGAGAGGGGACTTGCTCAGCGTACGTGGCAGTGTTCTCTGAAATC TGTTGTTGTTGTTGCCTGTAGAAAATTGATTTGGGGTTTAAAACAACCAGGGTGTCTTGG GTGAGATGTTTCAGATCGGGAGAAACAAGGCGCCGGGAAATGTATAACTTAAACCATGGC GAGGACCAGAAATGCCACACTCACCGCTCTGATCTGTGAAATAAAACC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGAGATCAAGGGCCAGCTGGTGAAACTGCTGTCTGTGCGTCTGTGCCCGCCAGTGTCTGG GCAGGCTGCCATGGATATCGTTGTGAACCCCCCGGTGCCAGGAGAGGAGTCCTTTGAGCA GTTCAGCAGGGAGAAAGAGTCCGTCTTGGGTAACCTGGCCAAAAAAGCCAAGCTGACAGA AGATTTGTTTAACCAAGTTCCGGGAATTCACTGCAACCCCCTGCAGGGTGCCATGTACGC CTTTCCTCGGATCTTCATCCCCACCAAAGCCATGGAGGCGGCTCAGGCCCATAAGATGGC CCCTGACATGTTCTACTGCATGAAGCTCCTGGAGGAGACGGGCATCTGTGTCGTGCCCGG CAGTGGCTTTGGGCAGAGGGAAGGCACCTACCACTTCAGAATGACCATTCTTCCTCCAGT GGAGAAGCTGAAGACAGTTCTCCAGAAAGTGAAGGACTTTCACATAAAGTTCCTGGAGAA GTACGCCTGAGGACTGCTCGGGCCCCTGAGGGAGACAGGGTCCTCGGCCTTCTTCCTGAC ATCCACCCAGCCCAGACCCAACTCGCCTCCCCCCGCGACTCTGCCTCAGGCCTTACAAAG GCCACTGGTCGCGCGTTCATTGTCATTTTGCCCCAGGAGACTTCTTTCTCTGTGCCTTGA TGTTGAGAGCACCTCTCTTCTGAGCAAATGTGAATTGGGGATATCTCAGAAGCCCTGTGT TTGGATGCAGCCAAAGGAGAGGGGACTTGCTCAGCGTACGTGGCAGTGTTCTCTGAAATC TGTTGTTGTTGTTGCCTGTAGAAAATTGATTTGGGGTTTAAAACAACCAGGGTGTCTTGG GTGAGATGTTTCAGATCGGGAGAAACAAGGCGCCGGGAAATGTATAACTTAAACCATGGC GAGGACCAGAAATGCCACACTCACCGCTCTGATCTGTGAAATAAAACC |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 36 entry(ies) | More info |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
| 130-287, gnl|bosTau2|chr18 (15681503-15681660) | |
| 130-287, gnl|canFam2|chrUn (59174405-59174512) | |
| 130-287, gnl|danRer3|chr7 (35548980-35548865) | |
| 130-287, gnl|dasNov1|scaffold_22163 (42354-42469) | |
| 130-287, gnl|echTel1|scaffold_161297 (1763-1658) | |
| 130-287, gnl|fr1|chrUn (283520838-283520954) | |
| 130-287, gnl|galGal2|chr11 (7936533-7936418) | |
| 130-287, gnl|hg17|chr16 (45515794-45515909) | |
| 130-287, gnl|Hg17|chr16 (45515801-45515958) | |
| 130-287, gnl|mm7|chr8 (84112043-84112157) | |
| 130-287, gnl|Mm7|chr8 (84112049-84112206) | |
| 130-287, gnl|monDom2|scaffold_35 (10966793-10966908) | |
| 130-287, gnl|oryCun1|scaffold_190962 (24412-24297) | |
| 130-287, gnl|panTro1|chrUn_random (9281926-9282041) | |
| 130-287, gnl|rheMac2|chr20 (45136982-45137097) | |
| 130-287, gnl|rn3|chr19 (22893466-22893352) | |
| 130-287, gnl|tetNig1|chr15_random (1536881-1536763) | |
| 130-287, gnl|xenTro1|scaffold_555 (247542-247657) | |
| 297-416, gnl|bosTau2|chr14 (3258131-3258011) | |
| 297-416, gnl|canFam2|chr13 (40957235-40957341) | |
| 297-416, gnl|danRer3|chr7 (35547849-35547744) | |
| 297-416, gnl|dasNov1|scaffold_179347 (6992-6883) | |
| 297-416, gnl|echTel1|scaffold_297519 (797-691) | |
| 297-416, gnl|fr1|chrUn (283521260-283521364) | |
| 297-416, gnl|hg17|chr8 (145702933-145703039) | |
| 297-416, gnl|Hg17|chr8 (145702932-145703050) | |
| 297-416, gnl|loxAfr1|scaffold_46440 (13280-13386) | |
| 297-416, gnl|mm7|chr15 (76781799-76781905) | |
| 297-416, gnl|Mm7|chr15 (76781798-76781918) | |
| 297-416, gnl|monDom2|scaffold_79 (3574162-3574312) | |
| 297-416, gnl|oryCun1|scaffold_190962 (23272-23168) | |
| 297-416, gnl|panTro1|chr7 (148959103-148959209) | |
| 297-416, gnl|rheMac2|chr8 (147171768-147171874) | |
| 297-416, gnl|rn3|chr7 (114782732-114782838) | |
| 297-416, gnl|tetNig1|chr6 (1276256-1276150) | |
| 297-416, gnl|xenTro1|scaffold_1265 (164124-164018) |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 130-287, gnl|bosTau2|chr18 (15681503-15681660) | |
| 130-287, gnl|canFam2|chrUn (59174405-59174512) | |
| 130-287, gnl|danRer3|chr7 (35548980-35548865) | |
| 130-287, gnl|dasNov1|scaffold_22163 (42354-42469) | |
| 130-287, gnl|echTel1|scaffold_161297 (1763-1658) | |
| 130-287, gnl|fr1|chrUn (283520838-283520954) | |
| 130-287, gnl|galGal2|chr11 (7936533-7936418) | |
| 130-287, gnl|hg17|chr16 (45515794-45515909) | |
| 130-287, gnl|Hg17|chr16 (45515801-45515958) | |
| 130-287, gnl|mm7|chr8 (84112043-84112157) | |
| 130-287, gnl|Mm7|chr8 (84112049-84112206) | |
| 130-287, gnl|monDom2|scaffold_35 (10966793-10966908) | |
| 130-287, gnl|oryCun1|scaffold_190962 (24412-24297) | |
| 130-287, gnl|panTro1|chrUn_random (9281926-9282041) | |
| 130-287, gnl|rheMac2|chr20 (45136982-45137097) | |
| 130-287, gnl|rn3|chr19 (22893466-22893352) | |
| 130-287, gnl|tetNig1|chr15_random (1536881-1536763) | |
| 130-287, gnl|xenTro1|scaffold_555 (247542-247657) | |
| 297-416, gnl|bosTau2|chr14 (3258131-3258011) | |
| 297-416, gnl|canFam2|chr13 (40957235-40957341) | |
| 297-416, gnl|danRer3|chr7 (35547849-35547744) | |
| 297-416, gnl|dasNov1|scaffold_179347 (6992-6883) | |
| 297-416, gnl|echTel1|scaffold_297519 (797-691) | |
| 297-416, gnl|fr1|chrUn (283521260-283521364) | |
| 297-416, gnl|hg17|chr8 (145702933-145703039) | |
| 297-416, gnl|Hg17|chr8 (145702932-145703050) | |
| 297-416, gnl|loxAfr1|scaffold_46440 (13280-13386) | |
| 297-416, gnl|mm7|chr15 (76781799-76781905) | |
| 297-416, gnl|Mm7|chr15 (76781798-76781918) | |
| 297-416, gnl|monDom2|scaffold_79 (3574162-3574312) | |
| 297-416, gnl|oryCun1|scaffold_190962 (23272-23168) | |
| 297-416, gnl|panTro1|chr7 (148959103-148959209) | |
| 297-416, gnl|rheMac2|chr8 (147171768-147171874) | |
| 297-416, gnl|rn3|chr7 (114782732-114782838) | |
| 297-416, gnl|tetNig1|chr6 (1276256-1276150) | |
| 297-416, gnl|xenTro1|scaffold_1265 (164124-164018) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cje (0.330469) | |
| cki (0.165235) |