Ss1.1-Pig4-TMW8064N22.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGCCTCTACACCGCCTCCGCTGCCGCCGCCGCCGCCGCTGCCGCCGCCTCAGCCCGTGAG ACTCGGCCAGGCCGCTGTCGTTTTCGCCGCTGCCATGGCTCAATACAAGGGTGCCGCGAG CGAGGCGGGCCGCGCCATGCACCTGATGAAAAAGCGAGAGAAACAGCGCGAGCAGATGGA ACAGATGAAGCAGAGGATCGCGGAGGAGAACATAATGAAATCCAACATTGACAAGAAGTT TCTTTTGGTCCCTCAGCCCTGGCACTGAGGCCTTAAGTCCCCTGAGGCACTCCAGGTCAC AGCTGACAGGGCAGGAATGAGGTACCTGGTCTCCGGTTCAGCTGCTGGTCGTAGAGACCC AGGCAAAGGCCCCTTGGCAAGGGCTCCTCCGAGAAAGGGCCGCGCATCCCGGGCGGGGTG GTCCTGGAAGCCTCGAGGGAGGTTTCGTTGGAGCTGAGAGCTTGGAGCCCAAGGTCTGGG ATACCCCAGGGGCGGGGCCTGTCGTGCGCTGACTCTTGGCTTCTCTTTGGCTGCAGAGGT CACCACGAAGAAGAGGAAGCTGGGGAAGAACCCAGACGTGGACACGAGCTTCTTGCCAGA CCGCGACCGGGAGGAGGAGGAGAATCGGCTGCGGGAAGAGCTGCGCCAGGAGTGGGAAGC CAAGCAGGAGAAGATCAAGAGTGAGGAGATTGAAATCACCTTCAGTTACTGGGACGGCTC CGGGCACCGGCGCACGGTCAAGATGAAAAAAGGCAACACGATGCAGCAGTTCCTGCAGAA GGCGCTCGAGATCCTGCGCAAGGACTTCAGTGAGCTCAGGTCCGCGGGGGTGGAGCAGCT CATGTACATCAAGGAGGACCTGATCATTCCCCACCACCACAGCTTCTACGACTTCATCGT CACCAAGGCACGAGGCAAGAGCGGGCCCCTCTTCAATTTCGACGTGCATGACGACGTGCG GCTGCTCAGCGACGCCACCGTGGAGAAGGACGAGTCGCACGCGGGCAAGGTGGTGCTGCG CAGCTGGTACGAGAAGAACAAGCACATCTTCCCCGCCAGCCGCTGGGAGCCCTACGACCC CGAGAAGAAGTGGGACAAATACACGATCCGATGATCCGGGTCCTCAGCTCCGCCAGCTCC CCGCTCCCGAGACGTGACGGGGCTGGTCGCCCCCCGCCCGGCGCTGTCATTCACCGCCTT TTTCTTCCGCGATAAAGAAGCGTCTGCGTCGAGAGTCGGGGCACCCGTGGCGTGTCTTGG TCCAAGATTTTTATCTTACACCTCCTTACTGAGCTGAAATTCACCTAACGTAACCTTGAC CCTCTGACCGCCGGGAAGGGGTGAAGTCCGGGCCCTCCGCACGCTCACTGTCGTGAGGGG TCCCCAGAGCAGCCGCCGTGTCCATCGGCCGCCTCTTCCCCAGCCCACTCTCCTTTCTGT GTGTGCGGATTGACCTGTTCTGGAAGTTTCACGTAAACAGAATCACAC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGCCTCTACACCGCCTCCGCTGCCGCCGCCGCCGCCGCTGCCGCCGCCTCAGCCCGTGAG ACTCGGCCAGGCCGCTGTCGTTTTCGCCGCTGCCATGGCTCAATACAAGGGTGCCGCGAG CGAGGCGGGCCGCGCCATGCACCTGATGAAAAAGCGAGAGAAACAGCGCGAGCAGATGGA ACAGATGAAGCAGAGGATCGCGGAGGAGAACATAATGAAATCCAACATTGACAAGAAGTT TCTTTTGGTCCCTCAGCCCTGGCACTGAGGCCTTAAGTCCCCTGAGGCACTCCAGGTCAC AGCTGACAGGGCAGGAATGAGGTACCTGGTCTCCGGTTCAGCTGCTGGTCGTAGAGACCC AGGCAAAGGCCCCTTGGCAAGGGCTCCTCCGAGAAAGGGCCGCGCATCCCGGGCGGGGTG GTCCTGGAAGCCTCGAGGGAGGTTTCGTTGGAGCTGAGAGCTTGGAGCCCAAGGTCTGGG ATACCCCAGGGGCGGGGCCTGTCGTGCGCTGACTCTTGGCTTCTCTTTGGCTGCAGAGGT CACCACGAAGAAGAGGAAGCTGGGGAAGAACCCAGACGTGGACACGAGCTTCTTGCCAGA CCGCGACCGGGAGGAGGAGGAGAATCGGCTGCGGGAAGAGCTGCGCCAGGAGTGGGAAGC CAAGCAGGAGAAGATCAAGAGTGAGGAGATTGAAATCACCTTCAGTTACTGGGACGGCTC CGGGCACCGGCGCACGGTCAAGATGAAAAAAGGCAACACGATGCAGCAGTTCCTGCAGAA GGCGCTCGAGATCCTGCGCAAGGACTTCAGTGAGCTCAGGTCCGCGGGGGTGGAGCAGCT CATGTACATCAAGGAGGACCTGATCATTCCCCACCACCACAGCTTCTACGACTTCATCGT CACCAAGGCACGAGGCAAGAGCGGGCCCCTCTTCAATTTCGACGTGCATGACGACGTGCG GCTGCTCAGCGACGCCACCGTGGAGAAGGACGAGTCGCACGCGGGCAAGGTGGTGCTGCG CAGCTGGTACGAGAAGAACAAGCACATCTTCCCCGCCAGCCGCTGGGAGCCCTACGACCC CGAGAAGAAGTGGGACAAATACACGATCCGATGATCCGGGTCCTCAGCTCCGCCAGCTCC CCGCTCCCGAGACGTGACGGGGCTGGTCGCCCCCCGCCCGGCGCTGTCATTCACCGCCTT TTTCTTCCGCGATAAAGAAGCGTCTGCGTCGAGAGTCGGGGCACCCGTGGCGTGTCTTGG TCCAAGATTTTTATCTTACACCTCCTTACTGAGCTGAAATTCACCTAACGTAACCTTGAC CCTCTGACCGCCGGGAAGGGGTGAAGTCCGGGCCCTCCGCACGCTCACTGTCGTGAGGGG TCCCCAGAGCAGCCGCCGTGTCCATCGGCCGCCTCTTCCCCAGCCCACTCTCCTTTCTGT GTGTGCGGATTGACCTGTTCTGGAAGTTTCACGTAAACAGAATCACAC |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 35 entry(ies) | More info |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
| 25-206, gnl|bosTau2|chrX (14728426-14728248) | |
| 25-206, gnl|Hg17|chrX (153236205-153236398) | |
| 25-206, gnl|Mm7|chrX (69699695-69699975) | |
| 484-614, gnl|bosTau2|chrX (14724966-14724834) | |
| 484-614, gnl|canFam2|chrX (125196879-125196971) | |
| 484-614, gnl|danRer3|chr23 (51068691-51068792) | |
| 484-614, gnl|dasNov1|scaffold_44146 (7335-7259) | |
| 484-614, gnl|echTel1|scaffold_38207 (3312-3383) | |
| 484-614, gnl|fr1|chrUn (190165172-190165252) | |
| 484-614, gnl|hg17|chrX (153240522-153240614) | |
| 484-614, gnl|loxAfr1|scaffold_101052 (1586-1517) | |
| 484-614, gnl|mm7|chrX (69704061-69704157) | |
| 484-614, gnl|monDom2|scaffold_3 (7449387-7449463) | |
| 484-614, gnl|panTro1|chrX (158512755-158512847) | |
| 484-614, gnl|rheMac2|chrX (152471564-152471656) | |
| 484-614, gnl|rn3|chrX (160369592-160369496) | |
| 484-614, gnl|tetNig1|chrUn_random (109929257-109929337) | |
| 484-614, gnl|xenTro1|scaffold_1225 (119878-119787) | |
| 993-1105, gnl|bosTau2|chrX (14723318-14723206) | |
| 993-1105, gnl|canFam2|chrX (125198495-125198604) | |
| 993-1105, gnl|danRer3|chr23 (51077331-51077440) | |
| 993-1105, gnl|dasNov1|scaffold_14849 (40534-40399) | |
| 993-1105, gnl|echTel1|scaffold_38207 (3764-3891) | |
| 993-1105, gnl|fr1|chrUn (190166441-190166574) | |
| 993-1105, gnl|hg17|chr6 (3795904-3796030) | |
| 993-1105, gnl|Hg17|chrX (153242259-153242371) | |
| 993-1105, gnl|loxAfr1|scaffold_101052 (1133-1006) | |
| 993-1105, gnl|mm7|chr13 (34162642-34162761) | |
| 993-1105, gnl|Mm7|chrX (69706039-69706151) | |
| 993-1105, gnl|monDom2|scaffold_3 (7449847-7449970) | |
| 993-1105, gnl|oryCun1|scaffold_105713 (1329-1212) | |
| 993-1105, gnl|panTro1|chr5 (4003510-4003636) | |
| 993-1105, gnl|rheMac2|chrX (152473318-152473427) | |
| 993-1105, gnl|rn3|chr17 (36513971-36513852) | |
| 993-1105, gnl|tetNig1|chrUn_random (109930552-109930661) |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 25-206, gnl|bosTau2|chrX (14728426-14728248) | |
| 25-206, gnl|Hg17|chrX (153236205-153236398) | |
| 25-206, gnl|Mm7|chrX (69699695-69699975) | |
| 484-614, gnl|bosTau2|chrX (14724966-14724834) | |
| 484-614, gnl|canFam2|chrX (125196879-125196971) | |
| 484-614, gnl|danRer3|chr23 (51068691-51068792) | |
| 484-614, gnl|dasNov1|scaffold_44146 (7335-7259) | |
| 484-614, gnl|echTel1|scaffold_38207 (3312-3383) | |
| 484-614, gnl|fr1|chrUn (190165172-190165252) | |
| 484-614, gnl|hg17|chrX (153240522-153240614) | |
| 484-614, gnl|loxAfr1|scaffold_101052 (1586-1517) | |
| 484-614, gnl|mm7|chrX (69704061-69704157) | |
| 484-614, gnl|monDom2|scaffold_3 (7449387-7449463) | |
| 484-614, gnl|panTro1|chrX (158512755-158512847) | |
| 484-614, gnl|rheMac2|chrX (152471564-152471656) | |
| 484-614, gnl|rn3|chrX (160369592-160369496) | |
| 484-614, gnl|tetNig1|chrUn_random (109929257-109929337) | |
| 484-614, gnl|xenTro1|scaffold_1225 (119878-119787) | |
| 993-1105, gnl|bosTau2|chrX (14723318-14723206) | |
| 993-1105, gnl|canFam2|chrX (125198495-125198604) | |
| 993-1105, gnl|danRer3|chr23 (51077331-51077440) | |
| 993-1105, gnl|dasNov1|scaffold_14849 (40534-40399) | |
| 993-1105, gnl|echTel1|scaffold_38207 (3764-3891) | |
| 993-1105, gnl|fr1|chrUn (190166441-190166574) | |
| 993-1105, gnl|hg17|chr6 (3795904-3796030) | |
| 993-1105, gnl|Hg17|chrX (153242259-153242371) | |
| 993-1105, gnl|loxAfr1|scaffold_101052 (1133-1006) | |
| 993-1105, gnl|mm7|chr13 (34162642-34162761) | |
| 993-1105, gnl|Mm7|chrX (69706039-69706151) | |
| 993-1105, gnl|monDom2|scaffold_3 (7449847-7449970) | |
| 993-1105, gnl|oryCun1|scaffold_105713 (1329-1212) | |
| 993-1105, gnl|panTro1|chr5 (4003510-4003636) | |
| 993-1105, gnl|rheMac2|chrX (152473318-152473427) | |
| 993-1105, gnl|rn3|chr17 (36513971-36513852) | |
| 993-1105, gnl|tetNig1|chrUn_random (109930552-109930661) |
| Expressed library(ies): 16 entry(ies) | More info |
| Expressed library(ies): 16 entry(ies) | Help | Less info |
| clu (0.478583) | |
| ece (0.229305) | |
| mas (0.210305) | |
| cut (0.169924) | |
| fhi (0.169578) | |
| cag (0.151194) | |
| nca (0.136874) | |
| ssp (0.13552) | |
| nmm (0.132802) | |
| eep (0.122564) | |
| eru (0.120048) | |
| pgl (0.118483) | |
| med (0.116252) | |
| ecc (0.115035) | |
| nbm (0.0993246) | |
| eje (0.0988338) |
| Expressed library(ies): 16 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| clu (0.478583) | |
| ece (0.229305) | |
| mas (0.210305) | |
| cut (0.169924) | |
| fhi (0.169578) | |
| cag (0.151194) | |
| nca (0.136874) | |
| ssp (0.13552) | |
| nmm (0.132802) | |
| eep (0.122564) | |
| eru (0.120048) | |
| pgl (0.118483) | |
| med (0.116252) | |
| ecc (0.115035) | |
| nbm (0.0993246) | |
| eje (0.0988338) |