Non-Coding RNA Search

Ss1.1-Pig4-TMW8064N24.5

Sequence:


               
               CGTCCGACCATGTCCAACATGGAGAAACACCTGTTCAACTTGAAGTTCGCGGCCAAAGAA
CTGGGCAGGAGTGCCAAGAAATGCGACAAGGAGGAAAAGGCCGAAAAGGCCAAGATTAAA
AAGGCCATTCAGAAGGGCAACATGGAAGTTGCGAGGATACACGCCGAGAACGCGATTCGC
CAGAAGAACCAGGCGGTGAATTTCCTGAGAATGAGTGCGCGGGTGGACGCGGTGGCTGCC
AGGGTCCAGACCGCCGTGACGATGGGCAAGGTGACCAAGTCGATGGCCGGTGTGGTTAAA
TCGATGGACGCGACGTTGAAGACCATGAATCTCGAGAAGATCTCCGCCCTGATGGACAAG
TTCGAACACCAGTTCGAGACTCTGGACGTGCAGACCCAGCAGATGGAGGACACGATGAGC
AGCACGACGACGCTGACCACTCCCCAGGGCCAGGTGGATATGCTGCTGCAGGAAATGGCA
GACGAGGCCGGCCTCGACCTCAACATGGAGCTGCCGCAGGGCCAGACCGGCTCCGTGGGC
ACGAGCGTGGCCTCGGCGGAGCAGGACGAACTGTCCCAGAGGCTGGCCCGCCTCCGGGAC
CAGGTGTAACCGCCGAACCCGCACAGAGGTGTCCTGGCCACAGCCGCCTTCGGAAGACGG
TTGCCCCACACTAGGAAGTCGGACCTCGCCCCAATGCCGAAATGCTCTTTACTTAAGATG
CTTCTACCTTTGGGTTTACAAAGCTCTCCAGATACATTAAGTTACAGGCTTTTCTCCACT
CTTAACTGGATTTCGAAGTTCTCGTGATGTGTATTTTTATAGCTGTCTCTTAACAGAACT
AGTTAATTTGTCGGATATGACTCTTCCCCCAAAATTTGGTCAAAGCTCTAATTCCCGGGT
ATTCACTTTTCTGCCCGAATTATAAGAATTGAAGGTTTTCTTAATGTTCTGTAATTAGAG
TTGTAATTAGAGTTAATTTTCTGTATCTAGAGTTGACAAGTGGTGATTACTTGGATTGAT
TACAGGGCTATTAATCCCTCATTCAGAGACTTACTTAATGGACAATGCTATTCTGTGTAT
CCTTTGTTTTTCACCATCAAACCCGGACAGCAGTTGACTATTAATCTGTTCTCGTAACTT
AACACTAAAATTACTTTAGGACTTTCTGGCATAATACTCTTACTGTTTACGTTCTATAAA
TGTGTTTGTGTGGAAGTTGTCTTTTTATAAGTGGAAAAAAATGCCACGTAACTTCCATTT
ATTATGAGAGAAAATTGTTCATTTATGGTTTGGGATTTACAAAGTTTAACATGCGACAGT
TTTTTCCAAATGAACTTCTCTCACACAATTCTAATTATCCTCCTATTTCAACACTTTAAT
TAGATATCTTTTAAAGTATGTGAATTAGCATGACAGTCCTATTACTCTAACATTGCCAAA
GAACTGTTGGTTGGTTTGGGAAAGCCCTGGGACTGTGTGTTTCTAGGTTTTGTTTTTATT
TTAATCAAAAATAGAAATAAAATTAGCACTGCATTTTAGGTTCTAATTATTTGCATTTAT
TATTTTGTCTTAAAACAACAACTCTTTAAAATCTTGGGAGTATCAATTGGAATGTTTTAC
TTAGCCATGAGAATCACTTAAATATACATGCAGCTGTCTGGGAATCTAGGAAGGAGAGGT
AGTAGGGTTGGACCGAAGGCTTGACCCTCTCAGGCTGAAGCCCAGCTGTGCTGCCTTCCA
TCTTTCAGGAAAGGGGGTGTGTAAAGTAAAAGTGAAATAAAGCCTGCAGCCACCGATTTT
TCAGATCCTCAAAACATGGAGAACGAAGACTTAACTTTTGCCTAGTATATTATGCAAGCA
TATTGATCTAGGTTAAATATTTAATTCTTCACTAGAAGATTTCTCCAAGAGAGAATTCCC
GCATTTCAGAAAAGAATTAAACGGATCTCAAGCCCTTTGAAAGATTCATAACCAAGTAGT
CACCATTACAATATGTCCTCCAGTGTGAATGCGTGTGTTTAAGGGGGGGAAAAACGAAGA
GGTGCGTGCAAGTAAGGAATGACCCTCGTATTTAAATGTTGTCAGTCTGACTAGTTGTTG
TTCCAGAGTGTTCCGTGAGGGACACCTGACAGTCGGTCTCAATTCTTCTTGTCCCTTTTG
GTGTCTCTGCTCATCCATAAGGTGGCACAGAGGCAGCTGTGTGTGAGCACAGCATGAATC
CTAACCCTTTTTGAGACTGGAAAAAATTATTGCAGCTTAGGAAAATAGCTTAGTGTTGGT
CCTTTGGTAAATTGAAGACCCTTTTGTAGTCCAGATATTCCCAACAAAATTAATATATTT
TGTGAGATTAAACAATGATTATATATGCTTGAATTTTCTTAAAATATGTTCATTTCAAAC
TATGAATGTACATTTTTATGAAACAGATATTTTCAAAAGTATACCAGGTCCGTGATTTAC
TTCCTCACTTTTGCAACTGATGAAATGCTGAAATGTAAACCATAGAAGTTTTGTCAAATA
AATCATTTTAAACTGCAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGTCCGACCATGTCCAACATGGAGAAACACCTGTTCAACTTGAAGTTCGCGGCCAAAGAA
CTGGGCAGGAGTGCCAAGAAATGCGACAAGGAGGAAAAGGCCGAAAAGGCCAAGATTAAA
AAGGCCATTCAGAAGGGCAACATGGAAGTTGCGAGGATACACGCCGAGAACGCGATTCGC
CAGAAGAACCAGGCGGTGAATTTCCTGAGAATGAGTGCGCGGGTGGACGCGGTGGCTGCC
AGGGTCCAGACCGCCGTGACGATGGGCAAGGTGACCAAGTCGATGGCCGGTGTGGTTAAA
TCGATGGACGCGACGTTGAAGACCATGAATCTCGAGAAGATCTCCGCCCTGATGGACAAG
TTCGAACACCAGTTCGAGACTCTGGACGTGCAGACCCAGCAGATGGAGGACACGATGAGC
AGCACGACGACGCTGACCACTCCCCAGGGCCAGGTGGATATGCTGCTGCAGGAAATGGCA
GACGAGGCCGGCCTCGACCTCAACATGGAGCTGCCGCAGGGCCAGACCGGCTCCGTGGGC
ACGAGCGTGGCCTCGGCGGAGCAGGACGAACTGTCCCAGAGGCTGGCCCGCCTCCGGGAC
CAGGTGTAACCGCCGAACCCGCACAGAGGTGTCCTGGCCACAGCCGCCTTCGGAAGACGG
TTGCCCCACACTAGGAAGTCGGACCTCGCCCCAATGCCGAAATGCTCTTTACTTAAGATG
CTTCTACCTTTGGGTTTACAAAGCTCTCCAGATACATTAAGTTACAGGCTTTTCTCCACT
CTTAACTGGATTTCGAAGTTCTCGTGATGTGTATTTTTATAGCTGTCTCTTAACAGAACT
AGTTAATTTGTCGGATATGACTCTTCCCCCAAAATTTGGTCAAAGCTCTAATTCCCGGGT
ATTCACTTTTCTGCCCGAATTATAAGAATTGAAGGTTTTCTTAATGTTCTGTAATTAGAG
TTGTAATTAGAGTTAATTTTCTGTATCTAGAGTTGACAAGTGGTGATTACTTGGATTGAT
TACAGGGCTATTAATCCCTCATTCAGAGACTTACTTAATGGACAATGCTATTCTGTGTAT
CCTTTGTTTTTCACCATCAAACCCGGACAGCAGTTGACTATTAATCTGTTCTCGTAACTT
AACACTAAAATTACTTTAGGACTTTCTGGCATAATACTCTTACTGTTTACGTTCTATAAA
TGTGTTTGTGTGGAAGTTGTCTTTTTATAAGTGGAAAAAAATGCCACGTAACTTCCATTT
ATTATGAGAGAAAATTGTTCATTTATGGTTTGGGATTTACAAAGTTTAACATGCGACAGT
TTTTTCCAAATGAACTTCTCTCACACAATTCTAATTATCCTCCTATTTCAACACTTTAAT
TAGATATCTTTTAAAGTATGTGAATTAGCATGACAGTCCTATTACTCTAACATTGCCAAA
GAACTGTTGGTTGGTTTGGGAAAGCCCTGGGACTGTGTGTTTCTAGGTTTTGTTTTTATT
TTAATCAAAAATAGAAATAAAATTAGCACTGCATTTTAGGTTCTAATTATTTGCATTTAT
TATTTTGTCTTAAAACAACAACTCTTTAAAATCTTGGGAGTATCAATTGGAATGTTTTAC
TTAGCCATGAGAATCACTTAAATATACATGCAGCTGTCTGGGAATCTAGGAAGGAGAGGT
AGTAGGGTTGGACCGAAGGCTTGACCCTCTCAGGCTGAAGCCCAGCTGTGCTGCCTTCCA
TCTTTCAGGAAAGGGGGTGTGTAAAGTAAAAGTGAAATAAAGCCTGCAGCCACCGATTTT
TCAGATCCTCAAAACATGGAGAACGAAGACTTAACTTTTGCCTAGTATATTATGCAAGCA
TATTGATCTAGGTTAAATATTTAATTCTTCACTAGAAGATTTCTCCAAGAGAGAATTCCC
GCATTTCAGAAAAGAATTAAACGGATCTCAAGCCCTTTGAAAGATTCATAACCAAGTAGT
CACCATTACAATATGTCCTCCAGTGTGAATGCGTGTGTTTAAGGGGGGGAAAAACGAAGA
GGTGCGTGCAAGTAAGGAATGACCCTCGTATTTAAATGTTGTCAGTCTGACTAGTTGTTG
TTCCAGAGTGTTCCGTGAGGGACACCTGACAGTCGGTCTCAATTCTTCTTGTCCCTTTTG
GTGTCTCTGCTCATCCATAAGGTGGCACAGAGGCAGCTGTGTGTGAGCACAGCATGAATC
CTAACCCTTTTTGAGACTGGAAAAAATTATTGCAGCTTAGGAAAATAGCTTAGTGTTGGT
CCTTTGGTAAATTGAAGACCCTTTTGTAGTCCAGATATTCCCAACAAAATTAATATATTT
TGTGAGATTAAACAATGATTATATATGCTTGAATTTTCTTAAAATATGTTCATTTCAAAC
TATGAATGTACATTTTTATGAAACAGATATTTTCAAAAGTATACCAGGTCCGTGATTTAC
TTCCTCACTTTTGCAACTGATGAAATGCTGAAATGTAAACCATAGAAGTTTTGTCAAATA
AATCATTTTAAACTGCAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q5E994_BOVIN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q5E994_BOVIN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               2-120, + strand, RNAz p=0.89594

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               2-120, + strand, RNAz p=0.89594

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of BC065933, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of BC065933, +

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               2-888, gnl|bosTau2|chr24 (31644619-31645495)
               

               
               2-888, gnl|Hg17|chr18 (11841503-11842402)
               

               
               2-888, gnl|Mm7|chr18 (67597788-67598585)
               


               
               983-2537, gnl|bosTau2|chr24 (31645825-31647381)
               

               
               983-2537, gnl|Hg17|chr18 (11842638-11844443)
               

               
               983-2537, gnl|Mm7|chr18 (67598723-67600266)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-888, gnl|bosTau2|chr24 (31644619-31645495)
               

               
               2-888, gnl|Hg17|chr18 (11841503-11842402)
               

               
               2-888, gnl|Mm7|chr18 (67597788-67598585)
               


               
               983-2537, gnl|bosTau2|chr24 (31645825-31647381)
               

               
               983-2537, gnl|Hg17|chr18 (11842638-11844443)
               

               
               983-2537, gnl|Mm7|chr18 (67598723-67600266)

Expressed library(ies): 29 entry(ies)

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Expressed library(ies): 29 entry(ies)

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               vin (0.665115)
               

               
               cte (0.58548)
               

               
               lin (0.582411)
               

               
               mga (0.480615)
               

               
               elu (0.385356)
               

               
               sin (0.349895)
               

               
               fat (0.294855)
               

               
               ski (0.29347)
               

               
               spl (0.286369)
               

               
               kid (0.259471)
               

               
               ova (0.258264)
               

               
               sug (0.254582)
               

               
               tra (0.246184)
               

               
               mgp (0.230681)
               

               
               sag (0.182715)
               

               
               gul (0.177588)
               

               
               fty (0.17584)
               

               
               rec (0.17307)
               

               
               duo (0.172801)
               

               
               nje (0.16592)
               

               
               tbr (0.154178)
               

               
               hlv (0.139256)
               

               
               lyg (0.133103)
               

               
               bla (0.124347)
               

               
               pgl (0.118483)
               

               
               med (0.116252)
               

               
               spc (0.113366)
               

               
               cty (0.10408)
               

               
               ldo (0.0970026)

Expressed library(ies): 29 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               vin (0.665115)
               

               
               cte (0.58548)
               

               
               lin (0.582411)
               

               
               mga (0.480615)
               

               
               elu (0.385356)
               

               
               sin (0.349895)
               

               
               fat (0.294855)
               

               
               ski (0.29347)
               

               
               spl (0.286369)
               

               
               kid (0.259471)
               

               
               ova (0.258264)
               

               
               sug (0.254582)
               

               
               tra (0.246184)
               

               
               mgp (0.230681)
               

               
               sag (0.182715)
               

               
               gul (0.177588)
               

               
               fty (0.17584)
               

               
               rec (0.17307)
               

               
               duo (0.172801)
               

               
               nje (0.16592)
               

               
               tbr (0.154178)
               

               
               hlv (0.139256)
               

               
               lyg (0.133103)
               

               
               bla (0.124347)
               

               
               pgl (0.118483)
               

               
               med (0.116252)
               

               
               spc (0.113366)
               

               
               cty (0.10408)
               

               
               ldo (0.0970026)

	2-888, gnl\|bosTau2\|chr24 (31644619-31645495)
	2-888, gnl\|Hg17\|chr18 (11841503-11842402)
	2-888, gnl\|Mm7\|chr18 (67597788-67598585)

	983-2537, gnl\|bosTau2\|chr24 (31645825-31647381)
	983-2537, gnl\|Hg17\|chr18 (11842638-11844443)
	983-2537, gnl\|Mm7\|chr18 (67598723-67600266)

	vin (0.665115)
	cte (0.58548)
	lin (0.582411)
	mga (0.480615)
	elu (0.385356)
	sin (0.349895)
	fat (0.294855)
	ski (0.29347)
	spl (0.286369)
	kid (0.259471)
	ova (0.258264)
	sug (0.254582)
	tra (0.246184)
	mgp (0.230681)
	sag (0.182715)
	gul (0.177588)
	fty (0.17584)
	rec (0.17307)
	duo (0.172801)
	nje (0.16592)
	tbr (0.154178)
	hlv (0.139256)
	lyg (0.133103)
	bla (0.124347)
	pgl (0.118483)
	med (0.116252)
	spc (0.113366)
	cty (0.10408)
	ldo (0.0970026)