Ss1.1-Pig4-TMW8064O04.3
|
TTTTGTAGAGCGCTGCTGAGGGTGCGCGCACGGCCGCGGCAGTAGAACAAAGGAGCAGGG
CGCCGCCGCAGGGACCCGCCACCGACCTCCCGGGCCGCGCCGGGGCCTCCAGCCCGCCGC
CACCATGACCGCCAACGGCACGGCCGAGGCCCTCCAGATCCAGTTCGGCCTCATCAATTG
CAGCAACAAGTACCTGACGGCCGAGACGTTCGGGTTCAAGGTGAACGCTTCGGCCAGCAG
CCTGAAGAAGAAGCAGATCTGGACGCTGGAGCAGCCGCCCGACGAGGCGGGCGGTGCAGC
CATGTGCCTGCGCAGCCACCTGGGCCGTTACCTGGCGGCGGACAAGGATGGCAACGTGAC
CTGCGAACATGAGGTGCCCGACGCCGACTGCCGCTTTCTCATCGTGGCGCACGACGACGG
CCGCTGGTCACTGCAGTCCGAGGCGCACCGGCGCTACTTTGGCGGCACCGAGGACCGCCT
GTCGTGCTTCGCTCAGACCGTGTCACCGGCCGAGAAGTGGAGCGTGCACATCGCCATGCA
CCCGCAGGTCAACATCTACAGCCTGGCCCGCAAGCGCTACGCGCACCTGAGCGCCCGGCC
CGCCGACGAGATCTCAGTGGACCGCGACGTGCCCTGGGGCGTCGACTCGCTCATCACGCT
GGCCTTCCAGGACCAGCGCTACAGCCTGCAGACGGCCGACCACCGCTTCCTGCGCCACGA
CGGGCGCCTAGTGGAGCAACCTGAGCCCGCCACAGGCTACACTCTCGAGTTCCGCTCCGG
CAAGGTGGCCTTCCGCGACTGCGAGGGCCGCTACCTGGCGCCGTCGGGGCCCAGCGGCAC
GCTCAAGGCGGGCAAGGCCACCAAGGTGGGCAAGGACGAGCTCTTCGCCCTGGAGCAGAG
CTGCGCCCAAGTCGTGCTGCAGGCTGCCAACGAGAGGAACGTGTCCACGCGCCAGGGTAT
GGACCTGTCAGCCAATCAGGACGAAGAGACCGACCAGGAGACTTTCCAGCTGGAGATCGA
CGGCGACACCAAAAAGTGTGCCTTCCGCACCCACTCGGGCAAGTACTGGACGCTGACGGC
CAGCGGGGGCGTGCAGTCCACTGCCTCCAGCAAGGATGCCAGCTGCTACTTTGACATCGA
GTGGCGTGATCGGAGGATCATACTGCGTGCCTCCAACGGCAAGTTTGTGACGGCCAAGAA
GAATGGCCAGCTGGCTGCCTCGGTGGAGACAGCAGGGGACTCGGAGCTCTTTCTCATGAA
GCTCATCAACCGCCCCATCATCGTGTTCCGCGGCGAACACGGCTTCATCGGCTGCCGCAA
GGTCACAGGCACCCTGGACGCGAATCGCTCCAACTACGACGTCTTCCAGCTGGAGTTCAG
GGACGGTGCCTACAACATCAAAGACTCCACGGGCAAGTACTGGATGGTGGGCACCGACTC
CTCCGTCACCAGCAGCAGCGACACCCCCGTGGACTTCTTCTTCGAGTTCCTTGACTACAA
CAAAGTGGCCATCAAGGTGGGCGGCCACTACCTGAAGGGGGACCACGCGGGGGTCCTGAA
GGCCTGTGCCGATGCCATCGACCCTGCCACGCTGTGGGAGTACTAGGCCCGCTGCCCGTG
TCCCCCTCCCCACCCTGCCCAGCCCCCTCCCGCTCACTCTTCTCTCCAGGGGGGCTCCGC
CGCAGGTGGCAAGCCCCTCGCCTTTCCAACTGGAAACCCAGAGAAAACGGTGCCCTCACC
TGTTCCCCGTGCGGCCTCCCCTGAGCAGGTCAGTGGCTGTGGCCTGGTCCTCGGAGGGAT
TTCCGATCCCTCTGCCCTTTCTTCTCTGCCCTGGGCGTGGCTGGAACCTCTTTCTTCTGA
CCTCAGACGACTCTGAGCCTTATCTCCCTGAAGAGGCCAAGGAGAATCACGGGGCTGGGA
GCCTTCCCAAGCCCCTGAGCGCGCGGCGGGGTGTGTAACTGGAATCTCTGTCCCCTCCTG
AGCCTCCCCTCCCCCGAGCCTGCCGGTGCCCCCCCAGAGCCCCGTCCCTGCATCAGGAGG
AAAGCCGGGCAGGGGAGAGCTGGAACAGATGTGTCCCCTCCTGCCCCCGGGTGAGGGGCC
CGCCCGCTGCGCACCCCACTGGGCTCCTGGGGCCCTGCTCCTGTCTCCTTTCTTTCACCC
TGGCCTGACTGGAAACAGAAAATGACCGAATCAGTATTTTTTTCGAAATGAAATGTTGTT
GCTGGAGGGGCCCCAGGCAAGCCTAGCTGTACCCATGAGTGGTCTTCAGGGGGTCTTGGG
GGGTCCTGAGAAGGCATGCCTGGGCCCAACGGCCTCTGCCCACTAGGGTTGGGGCAGGCC
GGGTGCCTCCCTGAGTCCAGAACCTGCCCCCACCTTCCCCTGGGCCCCGGCCCCAGGCCT
GTGTTCCCCTGGTGATGCTGGGCCTGTCACCGCCTCAGCCGGAGCCCCGGTGTGATTGGT
GCTCCTCTTCTGACTGGACTCCTTAGTCTCGGAGGGATGAAGCTGGGCATCCGCCTCAGC
CGGGAGCCCCGTGGAAGCTCCCAGCCCCACCCCTGCCAGCTCCCCTCACTTCTGGTTAGT
GTCCACCACGCATCTCACTCTGGGTGTCTTGGTCTTTTATTTTTTGTAAGTGTCATTTGT
ATAATCTCAAACGCCCATGATAGTAGCTTCAGACTGGAACGAGCAAAATAAAGTAACGCA
AGTCTAAAAAAAAAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
TTTTGTAGAGCGCTGCTGAGGGTGCGCGCACGGCCGCGGCAGTAGAACAAAGGAGCAGGG
CGCCGCCGCAGGGACCCGCCACCGACCTCCCGGGCCGCGCCGGGGCCTCCAGCCCGCCGC
CACCATGACCGCCAACGGCACGGCCGAGGCCCTCCAGATCCAGTTCGGCCTCATCAATTG
CAGCAACAAGTACCTGACGGCCGAGACGTTCGGGTTCAAGGTGAACGCTTCGGCCAGCAG
CCTGAAGAAGAAGCAGATCTGGACGCTGGAGCAGCCGCCCGACGAGGCGGGCGGTGCAGC
CATGTGCCTGCGCAGCCACCTGGGCCGTTACCTGGCGGCGGACAAGGATGGCAACGTGAC
CTGCGAACATGAGGTGCCCGACGCCGACTGCCGCTTTCTCATCGTGGCGCACGACGACGG
CCGCTGGTCACTGCAGTCCGAGGCGCACCGGCGCTACTTTGGCGGCACCGAGGACCGCCT
GTCGTGCTTCGCTCAGACCGTGTCACCGGCCGAGAAGTGGAGCGTGCACATCGCCATGCA
CCCGCAGGTCAACATCTACAGCCTGGCCCGCAAGCGCTACGCGCACCTGAGCGCCCGGCC
CGCCGACGAGATCTCAGTGGACCGCGACGTGCCCTGGGGCGTCGACTCGCTCATCACGCT
GGCCTTCCAGGACCAGCGCTACAGCCTGCAGACGGCCGACCACCGCTTCCTGCGCCACGA
CGGGCGCCTAGTGGAGCAACCTGAGCCCGCCACAGGCTACACTCTCGAGTTCCGCTCCGG
CAAGGTGGCCTTCCGCGACTGCGAGGGCCGCTACCTGGCGCCGTCGGGGCCCAGCGGCAC
GCTCAAGGCGGGCAAGGCCACCAAGGTGGGCAAGGACGAGCTCTTCGCCCTGGAGCAGAG
CTGCGCCCAAGTCGTGCTGCAGGCTGCCAACGAGAGGAACGTGTCCACGCGCCAGGGTAT
GGACCTGTCAGCCAATCAGGACGAAGAGACCGACCAGGAGACTTTCCAGCTGGAGATCGA
CGGCGACACCAAAAAGTGTGCCTTCCGCACCCACTCGGGCAAGTACTGGACGCTGACGGC
CAGCGGGGGCGTGCAGTCCACTGCCTCCAGCAAGGATGCCAGCTGCTACTTTGACATCGA
GTGGCGTGATCGGAGGATCATACTGCGTGCCTCCAACGGCAAGTTTGTGACGGCCAAGAA
GAATGGCCAGCTGGCTGCCTCGGTGGAGACAGCAGGGGACTCGGAGCTCTTTCTCATGAA
GCTCATCAACCGCCCCATCATCGTGTTCCGCGGCGAACACGGCTTCATCGGCTGCCGCAA
GGTCACAGGCACCCTGGACGCGAATCGCTCCAACTACGACGTCTTCCAGCTGGAGTTCAG
GGACGGTGCCTACAACATCAAAGACTCCACGGGCAAGTACTGGATGGTGGGCACCGACTC
CTCCGTCACCAGCAGCAGCGACACCCCCGTGGACTTCTTCTTCGAGTTCCTTGACTACAA
CAAAGTGGCCATCAAGGTGGGCGGCCACTACCTGAAGGGGGACCACGCGGGGGTCCTGAA
GGCCTGTGCCGATGCCATCGACCCTGCCACGCTGTGGGAGTACTAGGCCCGCTGCCCGTG
TCCCCCTCCCCACCCTGCCCAGCCCCCTCCCGCTCACTCTTCTCTCCAGGGGGGCTCCGC
CGCAGGTGGCAAGCCCCTCGCCTTTCCAACTGGAAACCCAGAGAAAACGGTGCCCTCACC
TGTTCCCCGTGCGGCCTCCCCTGAGCAGGTCAGTGGCTGTGGCCTGGTCCTCGGAGGGAT
TTCCGATCCCTCTGCCCTTTCTTCTCTGCCCTGGGCGTGGCTGGAACCTCTTTCTTCTGA
CCTCAGACGACTCTGAGCCTTATCTCCCTGAAGAGGCCAAGGAGAATCACGGGGCTGGGA
GCCTTCCCAAGCCCCTGAGCGCGCGGCGGGGTGTGTAACTGGAATCTCTGTCCCCTCCTG
AGCCTCCCCTCCCCCGAGCCTGCCGGTGCCCCCCCAGAGCCCCGTCCCTGCATCAGGAGG
AAAGCCGGGCAGGGGAGAGCTGGAACAGATGTGTCCCCTCCTGCCCCCGGGTGAGGGGCC
CGCCCGCTGCGCACCCCACTGGGCTCCTGGGGCCCTGCTCCTGTCTCCTTTCTTTCACCC
TGGCCTGACTGGAAACAGAAAATGACCGAATCAGTATTTTTTTCGAAATGAAATGTTGTT
GCTGGAGGGGCCCCAGGCAAGCCTAGCTGTACCCATGAGTGGTCTTCAGGGGGTCTTGGG
GGGTCCTGAGAAGGCATGCCTGGGCCCAACGGCCTCTGCCCACTAGGGTTGGGGCAGGCC
GGGTGCCTCCCTGAGTCCAGAACCTGCCCCCACCTTCCCCTGGGCCCCGGCCCCAGGCCT
GTGTTCCCCTGGTGATGCTGGGCCTGTCACCGCCTCAGCCGGAGCCCCGGTGTGATTGGT
GCTCCTCTTCTGACTGGACTCCTTAGTCTCGGAGGGATGAAGCTGGGCATCCGCCTCAGC
CGGGAGCCCCGTGGAAGCTCCCAGCCCCACCCCTGCCAGCTCCCCTCACTTCTGGTTAGT
GTCCACCACGCATCTCACTCTGGGTGTCTTGGTCTTTTATTTTTTGTAAGTGTCATTTGT
ATAATCTCAAACGCCCATGATAGTAGCTTCAGACTGGAACGAGCAAAATAAAGTAACGCA
AGTCTAAAAAAAAAAAAAAAAAAA
|
|
gi|14043107|gb|AAH07539.1| |
Protein identifier
|
gi|14043107|gb|AAH07539.1| |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
88-959, gnl|bosTau2|chr19 (45173044-45173910) |
|
88-959, gnl|Hg17|chr17 (77110118-77110981) |
|
88-959, gnl|Mm7|chr11 (120470718-120471582) |
| |
|
1104-1236, gnl|bosTau2|chr25 (37012457-37012325) |
|
1104-1236, gnl|Hg17|chr7 (5416358-5416490) |
|
1104-1236, gnl|Mm7|chr5 (142003091-142003223) |
| |
|
1402-1989, gnl|bosTau2|chr25 (37011580-37011001) |
|
1402-1989, gnl|Hg17|chr7 (5418142-5418758) |
|
1402-1989, gnl|Mm7|chr5 (142004828-142005420) |
| |
|
2099-2379, gnl|bosTau2|chr25 (37010923-37010649) |
|
2099-2379, gnl|Hg17|chr7 (5418874-5419234) |
| |
|
2537-2705, gnl|bosTau2|chr25 (37010437-37010269) |
|
2537-2705, gnl|canFam2|chr6 (15371754-15371597) |
|
2537-2705, gnl|dasNov1|scaffold_194217 (134-251) |
|
2537-2705, gnl|echTel1|scaffold_312079 (5630-5774) |
|
2537-2705, gnl|hg17|chr7 (5419338-5419476) |
|
2537-2705, gnl|Hg17|chr7 (5419377-5419518) |
|
2537-2705, gnl|loxAfr1|scaffold_32038 (5583-5424) |
|
2537-2705, gnl|mm7|chr5 (142005930-142006078) |
|
2537-2705, gnl|Mm7|chr5 (142005976-142006116) |
|
2537-2705, gnl|monDom2|scaffold_17 (5978509-5978623) |
|
2537-2705, gnl|oryCun1|scaffold_68803 (2975-2831) |
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2537-2705, gnl|panTro1|chr6 (5847133-5847271) |
|
2537-2705, gnl|rheMac2|chr3 (43369315-43369178) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
88-959, gnl|bosTau2|chr19 (45173044-45173910) |
|
88-959, gnl|Hg17|chr17 (77110118-77110981) |
|
88-959, gnl|Mm7|chr11 (120470718-120471582) |
| |
|
1104-1236, gnl|bosTau2|chr25 (37012457-37012325) |
|
1104-1236, gnl|Hg17|chr7 (5416358-5416490) |
|
1104-1236, gnl|Mm7|chr5 (142003091-142003223) |
| |
|
1402-1989, gnl|bosTau2|chr25 (37011580-37011001) |
|
1402-1989, gnl|Hg17|chr7 (5418142-5418758) |
|
1402-1989, gnl|Mm7|chr5 (142004828-142005420) |
| |
|
2099-2379, gnl|bosTau2|chr25 (37010923-37010649) |
|
2099-2379, gnl|Hg17|chr7 (5418874-5419234) |
| |
|
2537-2705, gnl|bosTau2|chr25 (37010437-37010269) |
|
2537-2705, gnl|canFam2|chr6 (15371754-15371597) |
|
2537-2705, gnl|dasNov1|scaffold_194217 (134-251) |
|
2537-2705, gnl|echTel1|scaffold_312079 (5630-5774) |
|
2537-2705, gnl|hg17|chr7 (5419338-5419476) |
|
2537-2705, gnl|Hg17|chr7 (5419377-5419518) |
|
2537-2705, gnl|loxAfr1|scaffold_32038 (5583-5424) |
|
2537-2705, gnl|mm7|chr5 (142005930-142006078) |
|
2537-2705, gnl|Mm7|chr5 (142005976-142006116) |
|
2537-2705, gnl|monDom2|scaffold_17 (5978509-5978623) |
|
2537-2705, gnl|oryCun1|scaffold_68803 (2975-2831) |
|
2537-2705, gnl|panTro1|chr6 (5847133-5847271) |
|
2537-2705, gnl|rheMac2|chr3 (43369315-43369178) |
|
ecc (0.920281) |
|
ece (0.917221) |
|
cov (0.792917) |
|
eep (0.735384) |
|
ese (0.506009) |
|
ebs (0.473205) |
|
fcc (0.39557) |
|
fbs (0.350693) |
|
cbr (0.255951) |
|
eru (0.240096) |
|
fty (0.17584) |
|
fhi (0.169578) |
|
csp (0.161186) |
|
cag (0.151194) |
|
hyp (0.142837) |
|
lnt (0.142308) |
|
med (0.116252) |
|
ecc (0.920281) |
|
ece (0.917221) |
|
cov (0.792917) |
|
eep (0.735384) |
|
ese (0.506009) |
|
ebs (0.473205) |
|
fcc (0.39557) |
|
fbs (0.350693) |
|
cbr (0.255951) |
|
eru (0.240096) |
|
fty (0.17584) |
|
fhi (0.169578) |
|
csp (0.161186) |
|
cag (0.151194) |
|
hyp (0.142837) |
|
lnt (0.142308) |
|
med (0.116252) |
