Non-Coding RNA Search

Ss1.1-Pig4-TMW8064O05.3

Sequence:


               
               AAAGCTCACTGCAAAACGTATGGTTAATTTTAGTCACCAATGGTGTAAAGCAAAACTTAG
GGTTTAGAGTGTGCTAGGATACCTGAAACCTGATGGTTATCTTTAAAATTGATGGTTTTT
CTCCTGAAATGTTTGTGCATGGAAGAACTGCCCTGCTTTTTTACCCTGTTGCCATGTATG
ATTATTCCTTGTGACATTACTTAATTACTTGGATTGAAGACTAGCCTAGGAAATTGAAGC
TGCTGCCAGGCAATACCACTCAGAGTAACTTAAAGGAATTATTTCTGATTAGAGGATCCT
CAAAAAGGAAGGGATGGTGGGAAACTGTTCTTCTGTCTTCAGATTCCTAGCAGAAAATGA
CTGTTTCAGACTATGCTTTGCTTGTATATGATGTAGTTACCTAACTATCCTTCAGTTCCT
CACTATCTTTTCCCTTTTTTTAAAGGCCTGTTGTTGTATTTAGTAGCAGCTTCAAGTGAC
CAAAAGACTAAAATCTTTCCTAATGTCAGTGCCAAAAGTCATGGGGAATTTTGCAGTGAC
ATGATTTTAGTCTATTACTATAAACACAAAATTTTGAACCATAGCTTTCATTTCAAATAT
CATCTTGAATTTGCATACTTTTTTTTTATGTCATGGGTCAAAAGACTTCAAGATTGGCAT
TTAATTTAAACAAGTAGGTATTTTATGATTGAGTTTCCTGTTTTTACAGAGAACGAGTAA
CTACTTTTTGGCTGAGAGATAGTTAAGGAAATTACTTTCTATGCATTAATTTTTCCATAT
GATTTTATAAGAGTTTAGATAGACTAGGAACAAGTTTACTTACTTTCACTTTTATGTGCT
TTGCCTCTGGTGATACAAGGTTTTTTTAAACATGGGTGGTAATTGTCTAGAAATACTGGC
AAGATTTTTGTAGTGGAGATCTGGCAGTATCCTGCATAACTGTTTGGGTGAGGAAATAAT
CAGTTCTGTTAAAGGTCAACCATGTTCAGGAAATGATCTCTATCTGAACCTCACTGTCCT
GTAAGGTTATCAAAGTAGATTAGCCCAGTTATGTTCTTTCTGTTGGATACCCAAATTATA
TTTTTTAAAAAATTAAACAGCTAAAAACTTGGACTAGAGCTTTAAAAAAAAAATCTTAAA
TTCTTTGAAAACATTCAAGTTAATATTTATAAAATATATTTCTATTACAAAGCACTGACA
AATGATGCCCTATGTGACTTGGAGTTATCTTTTGAGGTCATTTTACCACCAATCTTCATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAGCTCACTGCAAAACGTATGGTTAATTTTAGTCACCAATGGTGTAAAGCAAAACTTAG
GGTTTAGAGTGTGCTAGGATACCTGAAACCTGATGGTTATCTTTAAAATTGATGGTTTTT
CTCCTGAAATGTTTGTGCATGGAAGAACTGCCCTGCTTTTTTACCCTGTTGCCATGTATG
ATTATTCCTTGTGACATTACTTAATTACTTGGATTGAAGACTAGCCTAGGAAATTGAAGC
TGCTGCCAGGCAATACCACTCAGAGTAACTTAAAGGAATTATTTCTGATTAGAGGATCCT
CAAAAAGGAAGGGATGGTGGGAAACTGTTCTTCTGTCTTCAGATTCCTAGCAGAAAATGA
CTGTTTCAGACTATGCTTTGCTTGTATATGATGTAGTTACCTAACTATCCTTCAGTTCCT
CACTATCTTTTCCCTTTTTTTAAAGGCCTGTTGTTGTATTTAGTAGCAGCTTCAAGTGAC
CAAAAGACTAAAATCTTTCCTAATGTCAGTGCCAAAAGTCATGGGGAATTTTGCAGTGAC
ATGATTTTAGTCTATTACTATAAACACAAAATTTTGAACCATAGCTTTCATTTCAAATAT
CATCTTGAATTTGCATACTTTTTTTTTATGTCATGGGTCAAAAGACTTCAAGATTGGCAT
TTAATTTAAACAAGTAGGTATTTTATGATTGAGTTTCCTGTTTTTACAGAGAACGAGTAA
CTACTTTTTGGCTGAGAGATAGTTAAGGAAATTACTTTCTATGCATTAATTTTTCCATAT
GATTTTATAAGAGTTTAGATAGACTAGGAACAAGTTTACTTACTTTCACTTTTATGTGCT
TTGCCTCTGGTGATACAAGGTTTTTTTAAACATGGGTGGTAATTGTCTAGAAATACTGGC
AAGATTTTTGTAGTGGAGATCTGGCAGTATCCTGCATAACTGTTTGGGTGAGGAAATAAT
CAGTTCTGTTAAAGGTCAACCATGTTCAGGAAATGATCTCTATCTGAACCTCACTGTCCT
GTAAGGTTATCAAAGTAGATTAGCCCAGTTATGTTCTTTCTGTTGGATACCCAAATTATA
TTTTTTAAAAAATTAAACAGCTAAAAACTTGGACTAGAGCTTTAAAAAAAAAATCTTAAA
TTCTTTGAAAACATTCAAGTTAATATTTATAAAATATATTTCTATTACAAAGCACTGACA
AATGATGCCCTATGTGACTTGGAGTTATCTTTTGAGGTCATTTTACCACCAATCTTCATT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               456-575, + strand, RNAz p=0.846961

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               456-575, + strand, RNAz p=0.846961

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               509-577, + strand, RNAmicro p=0.945596
               

               
               491-604, - strand, RNAmicro p=0.905666

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               509-577, + strand, RNAmicro p=0.945596
               

               
               491-604, - strand, RNAmicro p=0.905666

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_001008390, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_001008390, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1260, gnl|bosTau2|chr1 (20186772-20188055)
               

               
               1-1260, gnl|Hg17|chr3 (88187162-88185928)
               

               
               1-1260, gnl|Mm7|chr16 (64802908-64804105)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1260, gnl|bosTau2|chr1 (20186772-20188055)
               

               
               1-1260, gnl|Hg17|chr3 (88187162-88185928)
               

               
               1-1260, gnl|Mm7|chr16 (64802908-64804105)

Expressed library(ies): 30 entry(ies)

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Expressed library(ies): 30 entry(ies)

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               thg (0.760746)
               

               
               pro (0.512033)
               

               
               cbl (0.45919)
               

               
               ece (0.45861)
               

               
               hea (0.408998)
               

               
               vin (0.332557)
               

               
               isp (0.300752)
               

               
               pty (0.285429)
               

               
               tra (0.246184)
               

               
               mgp (0.230681)
               

               
               sag (0.182715)
               

               
               gul (0.177588)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               mga (0.160205)
               

               
               lun (0.150489)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               ssp (0.13552)
               

               
               ste (0.135208)
               

               
               ute (0.132784)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               clu (0.119646)
               

               
               jca (0.11396)
               

               
               spc (0.113366)
               

               
               cty (0.10408)

Expressed library(ies): 30 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               thg (0.760746)
               

               
               pro (0.512033)
               

               
               cbl (0.45919)
               

               
               ece (0.45861)
               

               
               hea (0.408998)
               

               
               vin (0.332557)
               

               
               isp (0.300752)
               

               
               pty (0.285429)
               

               
               tra (0.246184)
               

               
               mgp (0.230681)
               

               
               sag (0.182715)
               

               
               gul (0.177588)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               mga (0.160205)
               

               
               lun (0.150489)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               ssp (0.13552)
               

               
               ste (0.135208)
               

               
               ute (0.132784)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               clu (0.119646)
               

               
               jca (0.11396)
               

               
               spc (0.113366)
               

               
               cty (0.10408)

	509-577, + strand, RNAmicro p=0.945596
	491-604, - strand, RNAmicro p=0.905666

	1-1260, gnl\|bosTau2\|chr1 (20186772-20188055)
	1-1260, gnl\|Hg17\|chr3 (88187162-88185928)
	1-1260, gnl\|Mm7\|chr16 (64802908-64804105)

	thg (0.760746)
	pro (0.512033)
	cbl (0.45919)
	ece (0.45861)
	hea (0.408998)
	vin (0.332557)
	isp (0.300752)
	pty (0.285429)
	tra (0.246184)
	mgp (0.230681)
	sag (0.182715)
	gul (0.177588)
	sin (0.174948)
	rec (0.17307)
	mga (0.160205)
	lun (0.150489)
	liv (0.146284)
	spl (0.143184)
	ssp (0.13552)
	ste (0.135208)
	ute (0.132784)
	ova (0.129132)
	ret (0.128733)
	sug (0.127291)
	ese (0.126502)
	bla (0.124347)
	clu (0.119646)
	jca (0.11396)
	spc (0.113366)
	cty (0.10408)