Non-Coding RNA Search

Ss1.1-Pig4-TMW8064O06.5

Sequence:


               
               GTTGAACAGACCCACTCCTCTTTCCCAGAAGTGCACTAATGCTGCCCCAGCCTTCTCTCC
AGAACTTTCCTCCCCACGGGCATGCCTGGGCAGCAGGGGAGACCACAGCCTCAGTGTGCA
ACCTGTGGGGGCCTCCTGTTCTCCATTTACCTTCTTCCTGTTCATCTGGTCCAAGGGATG
TGCCAAGGAGGACCTGGTGTAGTCAGGCTGCCCGAGGACTGATGCAGAGGAACCATCCGA
CACGTGACCGCCTCAGGTCATCAGCTGGCATCCAGTTGGTGGGATTCTCCGTAGAAATTA
AGTCAGGGTACCCGAATTTTGTGGTCCCCTCCCACCTGTAGTCTTCTCACAGCTGGAGAC
TTAAGTCTGAAGTCACACGTCTTGACATTTAGGAACACTTCCTTCACACAAGCACAACAG
AAAAAAGCACATACATTTGTATCAGCATCTGTTCCAGCAGGTTAGTACAAAATGTAGCAA
AGAAATTTGAACTGCATCTCCAATTTACCAATAGTGTAATCGTTTTCTTACAAATTAATA
CCGTATTTTGCAGTATTTCCAGAAAATCACCATGAAGAATAATGTAATATACTTGAGCTT
AATTCCTGATCTTAAATGTTTTTATGTATGCTATTCCCCACATTCTTTTTTCATTTACCC
TGTAATTTGTGCTTTCTGGTATTCTCTAAATCTTACCTTTTAAGCCACCTTAACCCTTTT
TGGAACAAGACGAAGAATAAATGTTATCCCTTTAAATCAGGTGAAAGTCAAAATATCCCA
GAGAAGGTCTGATTATATCAGGACTCTATATGAAACCAACTTGGAGAAGGTAAAAATAAC
TCATGATATCTTGGTGGTTTTATTTTATTCCTTTGACTGGATTTATGAATATATTCATAA
GAACTTTAATTTCAGCAAAAAGTGCCAATCTGCTATCTTTGAGGTTTCTGTGGAGTACTC
TCTTAGGAATGAAGAAATATTAAGTATGATTTTATAGTTTGCATTCCTGTTTCATAGGTT
ATTGCAGAACATTTGTTTGAACCTATGAATTATAAAATAGTATTTAGATTCTAGCATGAT
TTAAAAATAGGTTATGTATATCTTTAAAGTTGTGGACTTGATGTGTAAATTGTATATATT
ATGTGTAAGTTTACCATGATTATTAGTAAACCTGTTGCTGTTTTGTTGTCCCCCAATGGT
ATCAGTGTTTATGGATTTCTTTTATTGCTTTGAATTTTGGAATATTCTGTTAACAAAATA
TGATTTAAATGATTTTATACATTTAAATATGCCATGTTGTCTATATTAAAGAATATTGTA
AATATTAATGTTTGTATAGTCAGGAAAGCTTTTCCTGAAAATGATTGAACCTTCCTCCCT
GTACCTAACTGCGACATAAAAAAAAAACTGATTTTAAGCTTTGGGGTTTTATCTTGTGAG
AATTAAAGGAAAACATTCTGAAGATTCTATATAAATAAAATTTTGAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTGAACAGACCCACTCCTCTTTCCCAGAAGTGCACTAATGCTGCCCCAGCCTTCTCTCC
AGAACTTTCCTCCCCACGGGCATGCCTGGGCAGCAGGGGAGACCACAGCCTCAGTGTGCA
ACCTGTGGGGGCCTCCTGTTCTCCATTTACCTTCTTCCTGTTCATCTGGTCCAAGGGATG
TGCCAAGGAGGACCTGGTGTAGTCAGGCTGCCCGAGGACTGATGCAGAGGAACCATCCGA
CACGTGACCGCCTCAGGTCATCAGCTGGCATCCAGTTGGTGGGATTCTCCGTAGAAATTA
AGTCAGGGTACCCGAATTTTGTGGTCCCCTCCCACCTGTAGTCTTCTCACAGCTGGAGAC
TTAAGTCTGAAGTCACACGTCTTGACATTTAGGAACACTTCCTTCACACAAGCACAACAG
AAAAAAGCACATACATTTGTATCAGCATCTGTTCCAGCAGGTTAGTACAAAATGTAGCAA
AGAAATTTGAACTGCATCTCCAATTTACCAATAGTGTAATCGTTTTCTTACAAATTAATA
CCGTATTTTGCAGTATTTCCAGAAAATCACCATGAAGAATAATGTAATATACTTGAGCTT
AATTCCTGATCTTAAATGTTTTTATGTATGCTATTCCCCACATTCTTTTTTCATTTACCC
TGTAATTTGTGCTTTCTGGTATTCTCTAAATCTTACCTTTTAAGCCACCTTAACCCTTTT
TGGAACAAGACGAAGAATAAATGTTATCCCTTTAAATCAGGTGAAAGTCAAAATATCCCA
GAGAAGGTCTGATTATATCAGGACTCTATATGAAACCAACTTGGAGAAGGTAAAAATAAC
TCATGATATCTTGGTGGTTTTATTTTATTCCTTTGACTGGATTTATGAATATATTCATAA
GAACTTTAATTTCAGCAAAAAGTGCCAATCTGCTATCTTTGAGGTTTCTGTGGAGTACTC
TCTTAGGAATGAAGAAATATTAAGTATGATTTTATAGTTTGCATTCCTGTTTCATAGGTT
ATTGCAGAACATTTGTTTGAACCTATGAATTATAAAATAGTATTTAGATTCTAGCATGAT
TTAAAAATAGGTTATGTATATCTTTAAAGTTGTGGACTTGATGTGTAAATTGTATATATT
ATGTGTAAGTTTACCATGATTATTAGTAAACCTGTTGCTGTTTTGTTGTCCCCCAATGGT
ATCAGTGTTTATGGATTTCTTTTATTGCTTTGAATTTTGGAATATTCTGTTAACAAAATA
TGATTTAAATGATTTTATACATTTAAATATGCCATGTTGTCTATATTAAAGAATATTGTA
AATATTAATGTTTGTATAGTCAGGAAAGCTTTTCCTGAAAATGATTGAACCTTCCTCCCT
GTACCTAACTGCGACATAAAAAAAAAACTGATTTTAAGCTTTGGGGTTTTATCTTGTGAG
AATTAAAGGAAAACATTCTGAAGATTCTATATAAATAAAATTTTGAAA

Aligned organism(s): 5 entry(ies)

More info

Aligned organism(s): 5 entry(ies)

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               342-613, gnl|bosTau2|chr3 (65337044-65336778)
               

               
               342-613, gnl|Hg17|chr1 (58833658-58833340)
               

               
               342-613, gnl|Mm7|chr4 (94336038-94335796)
               


               
               646-1488, gnl|bosTau2|chr3 (65336767-65335904)
               

               
               646-1488, gnl|Hg17|chr1 (58833288-58832441)

Aligned organism(s): 5 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               342-613, gnl|bosTau2|chr3 (65337044-65336778)
               

               
               342-613, gnl|Hg17|chr1 (58833658-58833340)
               

               
               342-613, gnl|Mm7|chr4 (94336038-94335796)
               


               
               646-1488, gnl|bosTau2|chr3 (65336767-65335904)
               

               
               646-1488, gnl|Hg17|chr1 (58833288-58832441)

Expressed library(ies): 13 entry(ies)

More info

Expressed library(ies): 13 entry(ies)

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               liv (0.731422)
               

               
               cbe (0.239234)
               

               
               sag (0.182715)
               

               
               fty (0.17584)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               mga (0.160205)
               

               
               tbr (0.154178)
               

               
               ste (0.135208)
               

               
               nmm (0.132802)
               

               
               ret (0.128733)
               

               
               cbl (0.114797)
               

               
               ldo (0.0970026)

Expressed library(ies): 13 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               liv (0.731422)
               

               
               cbe (0.239234)
               

               
               sag (0.182715)
               

               
               fty (0.17584)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               mga (0.160205)
               

               
               tbr (0.154178)
               

               
               ste (0.135208)
               

               
               nmm (0.132802)
               

               
               ret (0.128733)
               

               
               cbl (0.114797)
               

               
               ldo (0.0970026)

	342-613, gnl\|bosTau2\|chr3 (65337044-65336778)
	342-613, gnl\|Hg17\|chr1 (58833658-58833340)
	342-613, gnl\|Mm7\|chr4 (94336038-94335796)

	646-1488, gnl\|bosTau2\|chr3 (65336767-65335904)
	646-1488, gnl\|Hg17\|chr1 (58833288-58832441)

	liv (0.731422)
	cbe (0.239234)
	sag (0.182715)
	fty (0.17584)
	sin (0.174948)
	rec (0.17307)
	mga (0.160205)
	tbr (0.154178)
	ste (0.135208)
	nmm (0.132802)
	ret (0.128733)
	cbl (0.114797)
	ldo (0.0970026)