Non-Coding RNA Search

Ss1.1-Pig4-TMW8064O20.5

Sequence:


               
               GTGATGGCCGCAGAGGCGACACCAGTGGTTGGAGCGCTGAAGGGTGGGGATCTCCCGGGG
CCCGGGCAGAAGCCCCAACCGGCTCGTCGGGCCTTGTATTTCTGCGGGAGCATCCGTGGA
GGACGCGAGGACCAGGCACTGTACGGGCGGATCGTGTCGCGGCTGCGGCGCTTTGGGGCT
GTGCTTACGGAACACGTGGCCGCAGCCGAGCTGAGCGCGCGCGGAGAGGAGGCTGCTGCG
GATGACAGAGCCATCCATGAGCGGGACCTGGCCTGGCTGCAGCAGGCAGATGTGGTTGTG
GCAGAAGTGACCCAGCCCTCTCTGGGTGTCGGCTACGAGCTGGGCCGGGCTATAGCCCTC
AACAAACCAGTCCTGTGCCTGTTCCGCCCGCAGTCTGGCCGAGTGCTCTCAGCGATGATC
CGGGGAGCTGCCGAGGGCTCGAGGTTCCAGGTGTGGGACTACGATGAGGCAGAGGTGGAG
GCCGTGCTGGATCGGTACTTTGAGGCTGATCCTCCCAGGCAGGTGGCCTCCTCCCCAAAT
CCACCCACTTGACTGAAGTCCAGGTTATTAAATTCCTCTGACCCCAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGATGGCCGCAGAGGCGACACCAGTGGTTGGAGCGCTGAAGGGTGGGGATCTCCCGGGG
CCCGGGCAGAAGCCCCAACCGGCTCGTCGGGCCTTGTATTTCTGCGGGAGCATCCGTGGA
GGACGCGAGGACCAGGCACTGTACGGGCGGATCGTGTCGCGGCTGCGGCGCTTTGGGGCT
GTGCTTACGGAACACGTGGCCGCAGCCGAGCTGAGCGCGCGCGGAGAGGAGGCTGCTGCG
GATGACAGAGCCATCCATGAGCGGGACCTGGCCTGGCTGCAGCAGGCAGATGTGGTTGTG
GCAGAAGTGACCCAGCCCTCTCTGGGTGTCGGCTACGAGCTGGGCCGGGCTATAGCCCTC
AACAAACCAGTCCTGTGCCTGTTCCGCCCGCAGTCTGGCCGAGTGCTCTCAGCGATGATC
CGGGGAGCTGCCGAGGGCTCGAGGTTCCAGGTGTGGGACTACGATGAGGCAGAGGTGGAG
GCCGTGCTGGATCGGTACTTTGAGGCTGATCCTCCCAGGCAGGTGGCCTCCTCCCCAAAT
CCACCCACTTGACTGAAGTCCAGGTTATTAAATTCCTCTGACCCCAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|56204988|emb|CAI20205.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|56204988|emb|CAI20205.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               79-233, gnl|bosTau2|chr23 (13232904-13232749)
               

               
               79-233, gnl|Hg17|chr6 (43305121-43304959)
               

               
               79-233, gnl|Mm7|chr17 (44625560-44625709)
               


               
               394-585, gnl|bosTau2|chr23 (13230811-13230612)
               

               
               394-585, gnl|Hg17|chr6 (43301606-43301417)
               

               
               394-585, gnl|Mm7|chr17 (44627600-44627777)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               79-233, gnl|bosTau2|chr23 (13232904-13232749)
               

               
               79-233, gnl|Hg17|chr6 (43305121-43304959)
               

               
               79-233, gnl|Mm7|chr17 (44625560-44625709)
               


               
               394-585, gnl|bosTau2|chr23 (13230811-13230612)
               

               
               394-585, gnl|Hg17|chr6 (43301606-43301417)
               

               
               394-585, gnl|Mm7|chr17 (44627600-44627777)

Expressed library(ies): 12 entry(ies)

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Expressed library(ies): 12 entry(ies)

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               elu (0.385356)
               

               
               cag (0.302389)
               

               
               eje (0.296501)
               

               
               ese (0.253004)
               

               
               fcc (0.197785)
               

               
               nlu (0.191681)
               

               
               duo (0.172801)
               

               
               eli (0.151814)
               

               
               cst (0.140036)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)

Expressed library(ies): 12 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               elu (0.385356)
               

               
               cag (0.302389)
               

               
               eje (0.296501)
               

               
               ese (0.253004)
               

               
               fcc (0.197785)
               

               
               nlu (0.191681)
               

               
               duo (0.172801)
               

               
               eli (0.151814)
               

               
               cst (0.140036)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)

	79-233, gnl\|bosTau2\|chr23 (13232904-13232749)
	79-233, gnl\|Hg17\|chr6 (43305121-43304959)
	79-233, gnl\|Mm7\|chr17 (44625560-44625709)

	394-585, gnl\|bosTau2\|chr23 (13230811-13230612)
	394-585, gnl\|Hg17\|chr6 (43301606-43301417)
	394-585, gnl\|Mm7\|chr17 (44627600-44627777)

	elu (0.385356)
	cag (0.302389)
	eje (0.296501)
	ese (0.253004)
	fcc (0.197785)
	nlu (0.191681)
	duo (0.172801)
	eli (0.151814)
	cst (0.140036)
	eru (0.120048)
	ebs (0.118301)
	ecc (0.115035)