Non-Coding RNA Search

Ss1.1-Pig4-TMW8064O22.5.5

Sequence:


               
               CCAAGTACGTCCAGGTCCTCTATGACTTCACGGCGCGCAACGCCAACGAGCGGGCGGTGC
TCAAGGACGAGGTCCTGGAGGTGCTGGAAGACGGTCACCAGTGGTGGAAGCTTCGAAATC
GCAGTGGCCAGGCAGGCTACGTGCCCAGCAACATCCTGATCCGGCTGGAGGAGGTCTCCG
CTGAGCAGGCCAGTCTGAAATACTGGGGTCCTGCCAGCCCAACCCACAAGCTGCCCCCAG
GCTTCGCCGGCAACAAAGACGAGCTGATCCACTACATGGACGAGGTCAACGACGAGCTCC
TCAAGAAGATCAGCCACATCAGGACGCAGCCGCAGCGGCACTTCCGCGTGGAGCGCAGCC
AGCCCGTGCACCTGCCGCTCACCTACGAGTCCGGCCCCCGCGAGGTCCGCGCCTGGCTGG
AAGCCAAGGCCTTCAGCCCCCGGATCGTGGAGAATCTGGGCATCCTGACGGGGCCCCAGC
TCTTCTCGCTCAACAAAGACGAGCTGAGGAAGGTGTGCGGGGAGGAGGGCGCCCGCGTGT
ACAGCCAGCTCACCGTGCAGAAGGCCGTCCTGGAGAAGCAGCACAGTGGGTCGGAGCTGG
AGGAGGTCATGAGCAAGTTCCACTCCAAGACGCAACGGCGGGCGGAGGAGGACAGCTAGG
CCTGCCGCAGGGCCCGCCCCGCGGCACCGGGCGTTCCTTTGGCACGTGTGTGTGTGCATC
GCCCGCCACGGACGCTGACCGAGTGTGGTGCCGGCTGGGGGCCGCTCGCCCGCCTCACGG
CGCGTGGGGCCGGTCCTCAGGCTCGGCAGTGCCCCCCTCGCCCCCCAGCCTGCCCGAGGC
CCACCTCAGCCAAACTTGCCACCTGGAGGTGCCAGCCCCTCGTCCGCCTGCCCCCTGAGG
CCCGGAGCTGTGCCTGTCCCAGACCCAGCCCGTCCCCACCCCTCTCCCGAGGCCGCAGAA
CCCTCGGGAGGGGCAGGGCCCTTTCCCCCGCCGCCTCCACGCTCACAAGGGTTCCTCCTG
GCGCATGTGACTGGCCCTGTCCCCGCTCACTGCCACATCCACCTGCAGCCGCTACACTCA
GTCCTGCGGACACATGGTGCCAGAAGGGCAGCAGGCCTCAGCCTCAGGCCACCCTTGCTC
GGAGCTGGCCGGCTGGAGACCCTCGACCCCGCAGTATAGCCCTCGGTACCCACAGCTCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCAAGTACGTCCAGGTCCTCTATGACTTCACGGCGCGCAACGCCAACGAGCGGGCGGTGC
TCAAGGACGAGGTCCTGGAGGTGCTGGAAGACGGTCACCAGTGGTGGAAGCTTCGAAATC
GCAGTGGCCAGGCAGGCTACGTGCCCAGCAACATCCTGATCCGGCTGGAGGAGGTCTCCG
CTGAGCAGGCCAGTCTGAAATACTGGGGTCCTGCCAGCCCAACCCACAAGCTGCCCCCAG
GCTTCGCCGGCAACAAAGACGAGCTGATCCACTACATGGACGAGGTCAACGACGAGCTCC
TCAAGAAGATCAGCCACATCAGGACGCAGCCGCAGCGGCACTTCCGCGTGGAGCGCAGCC
AGCCCGTGCACCTGCCGCTCACCTACGAGTCCGGCCCCCGCGAGGTCCGCGCCTGGCTGG
AAGCCAAGGCCTTCAGCCCCCGGATCGTGGAGAATCTGGGCATCCTGACGGGGCCCCAGC
TCTTCTCGCTCAACAAAGACGAGCTGAGGAAGGTGTGCGGGGAGGAGGGCGCCCGCGTGT
ACAGCCAGCTCACCGTGCAGAAGGCCGTCCTGGAGAAGCAGCACAGTGGGTCGGAGCTGG
AGGAGGTCATGAGCAAGTTCCACTCCAAGACGCAACGGCGGGCGGAGGAGGACAGCTAGG
CCTGCCGCAGGGCCCGCCCCGCGGCACCGGGCGTTCCTTTGGCACGTGTGTGTGTGCATC
GCCCGCCACGGACGCTGACCGAGTGTGGTGCCGGCTGGGGGCCGCTCGCCCGCCTCACGG
CGCGTGGGGCCGGTCCTCAGGCTCGGCAGTGCCCCCCTCGCCCCCCAGCCTGCCCGAGGC
CCACCTCAGCCAAACTTGCCACCTGGAGGTGCCAGCCCCTCGTCCGCCTGCCCCCTGAGG
CCCGGAGCTGTGCCTGTCCCAGACCCAGCCCGTCCCCACCCCTCTCCCGAGGCCGCAGAA
CCCTCGGGAGGGGCAGGGCCCTTTCCCCCGCCGCCTCCACGCTCACAAGGGTTCCTCCTG
GCGCATGTGACTGGCCCTGTCCCCGCTCACTGCCACATCCACCTGCAGCCGCTACACTCA
GTCCTGCGGACACATGGTGCCAGAAGGGCAGCAGGCCTCAGCCTCAGGCCACCCTTGCTC
GGAGCTGGCCGGCTGGAGACCCTCGACCCCGCAGTATAGCCCTCGGTACCCACAGCTCCC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|14042688|dbj|BAB55354.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|14042688|dbj|BAB55354.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               65-189, gnl|bosTau2|chr29 (44754512-44754642)
               

               
               65-189, gnl|Hg17|chr11 (715694-715848)
               

               
               65-189, gnl|Mm7|chr7 (137778260-137778384)
               


               
               574-920, gnl|bosTau2|chr29 (44755426-44755751)
               

               
               574-920, gnl|Hg17|chr11 (716899-717232)
               

               
               574-920, gnl|Mm7|chr7 (137779383-137779771)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               65-189, gnl|bosTau2|chr29 (44754512-44754642)
               

               
               65-189, gnl|Hg17|chr11 (715694-715848)
               

               
               65-189, gnl|Mm7|chr7 (137778260-137778384)
               


               
               574-920, gnl|bosTau2|chr29 (44755426-44755751)
               

               
               574-920, gnl|Hg17|chr11 (716899-717232)
               

               
               574-920, gnl|Mm7|chr7 (137779383-137779771)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               nje (0.33184)
               

               
               pla (0.133672)
               

               
               ese (0.126502)
               

               
               eru (0.120048)
               

               
               jej (0.0989218)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nje (0.33184)
               

               
               pla (0.133672)
               

               
               ese (0.126502)
               

               
               eru (0.120048)
               

               
               jej (0.0989218)

	65-189, gnl\|bosTau2\|chr29 (44754512-44754642)
	65-189, gnl\|Hg17\|chr11 (715694-715848)
	65-189, gnl\|Mm7\|chr7 (137778260-137778384)

	574-920, gnl\|bosTau2\|chr29 (44755426-44755751)
	574-920, gnl\|Hg17\|chr11 (716899-717232)
	574-920, gnl\|Mm7\|chr7 (137779383-137779771)

	nje (0.33184)
	pla (0.133672)
	ese (0.126502)
	eru (0.120048)
	jej (0.0989218)