Ss1.1-Pig4-TMW8064P03.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ATTTTGGTACTGCCGTCGCCGGGGCCGGGGAGGGGGCGCGTTGGTGGCAGGAAGCGGGCT GCGCCGAGGTCGTCGCGGAACCAGCTGGTGACCCTCGCAGGATGAACCACAAGAGCAAGA AGCGGATCCGCGAGGCCAAGCGGAGTGCGCGGCCGGAGCTGAAGGACTCGCTGGACTGGA CTCGGCATAACTACTACGAAAGCTTCCCGCTGAACCCAGCGGCCGTGGCGGACAATGTGG AACGGGCAGACGCCTTACAGCTGTCGGTGGAAGAGTTCGTGGAGCGATATGAAAGACCTT ATAAGCCCGTGGTTCTGCTGAATGCCCAAGAGGGCTGGTCGGCGCAGGAGAAGTGGACTT TGGAGCGCCTCAAGAGGAAATACCGGAACCAGAAGTTCAAGTGCGGTGAGGATAATGATG GCTACTCGGTGAAGATGAAGATGAAATACTACATCGAGTACATGGAGAGCACGAGAGATG ACAGTCCCCTTTACATCTTTGACAGCAGCTACGGGGAGCACCCCAAAAGAAGGAAACTTC TGGAAGACTACACGGTGCCCAAGTTTTTCACCGATGACCTCTTCCAGTATGCGGGGGAGA AGCGCAGGCCCCCTTACAGGTGGTTTGTGATGGGGCCTCCACGCTCTGGAACCGGAATTC ACATCGACCCCCTGGGAACCAGCGCCTGGAATGCCTTAGTTCAGGGTCACAAGCGCTGGT GCTTATTCCCCACCAGCACGCCCCGGGAGCTCATCAAGGTGACCCGTGAAGAAGGTGGGA ACCAGCAAGATGAAGCTATTACCTGGTTTAACATCATCTACCCGCGAACACAGCTTCCGA CCTGGCCACCCGAATTCAAACCCCTGGAAATCTTACAAAAGCCAGGAGAGACTGTCTTTG TACCAGGAGGCTGGTGGCACGTCGTCCTCAATCTTGATACCACCATTGCCATCACCCAGA ACTTTGCCAGCAGCACCAACTTCCCTGTTGTCTGGCACAAGACGGTAAGAGGGAGACCAA AGCTATCAAGGAAATGGTACAGGATCTTGAAGCAGGAGCACCCTGAGCTGGCAGTCCTGG CCGACTCGGTCGACCTGCAAGAGTCCACGGGGATCGCCTCCGACAGCTCCAGCGACTCGT CCAGCTCCTCCAGTTCCAGCTCATCCGACTCGGACTCAGAGTGCGAGTCTGGCTCCGAAG GCGACGGGACGACGCACCGCAGGAAGAAGCGGAGGACGTGCGGCATGGTGGGCAACGGGG ACGCCACCTCCCAGGACGACTGCGTGAGCAAGGAGCGCAGCTCCTCCAGGTGACCGCGCA CGCCTGCGCCTGTGCCTGTGTGGAAGGACGTGCCTGCGGCCGGGCCCCGGGGCGGCCTCG CGGTTCTGCAGAGAGGGGGCCGCAGAGCCAGGGAAGGAGGGCGTCTCGGAGCAGGAGTCC GCTCACTTGGCCTCTTCGATGGGGCTTTGCTGTTTCCAGTGCAAGTTAACGTGGCTTGTT TTATGCATAAAGGCGAGAATCTGCGTGGTTGGTGCCAAGGAAACCCTTTACCTTATTTAA TAAAAATTCAGTTCATCTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ATTTTGGTACTGCCGTCGCCGGGGCCGGGGAGGGGGCGCGTTGGTGGCAGGAAGCGGGCT GCGCCGAGGTCGTCGCGGAACCAGCTGGTGACCCTCGCAGGATGAACCACAAGAGCAAGA AGCGGATCCGCGAGGCCAAGCGGAGTGCGCGGCCGGAGCTGAAGGACTCGCTGGACTGGA CTCGGCATAACTACTACGAAAGCTTCCCGCTGAACCCAGCGGCCGTGGCGGACAATGTGG AACGGGCAGACGCCTTACAGCTGTCGGTGGAAGAGTTCGTGGAGCGATATGAAAGACCTT ATAAGCCCGTGGTTCTGCTGAATGCCCAAGAGGGCTGGTCGGCGCAGGAGAAGTGGACTT TGGAGCGCCTCAAGAGGAAATACCGGAACCAGAAGTTCAAGTGCGGTGAGGATAATGATG GCTACTCGGTGAAGATGAAGATGAAATACTACATCGAGTACATGGAGAGCACGAGAGATG ACAGTCCCCTTTACATCTTTGACAGCAGCTACGGGGAGCACCCCAAAAGAAGGAAACTTC TGGAAGACTACACGGTGCCCAAGTTTTTCACCGATGACCTCTTCCAGTATGCGGGGGAGA AGCGCAGGCCCCCTTACAGGTGGTTTGTGATGGGGCCTCCACGCTCTGGAACCGGAATTC ACATCGACCCCCTGGGAACCAGCGCCTGGAATGCCTTAGTTCAGGGTCACAAGCGCTGGT GCTTATTCCCCACCAGCACGCCCCGGGAGCTCATCAAGGTGACCCGTGAAGAAGGTGGGA ACCAGCAAGATGAAGCTATTACCTGGTTTAACATCATCTACCCGCGAACACAGCTTCCGA CCTGGCCACCCGAATTCAAACCCCTGGAAATCTTACAAAAGCCAGGAGAGACTGTCTTTG TACCAGGAGGCTGGTGGCACGTCGTCCTCAATCTTGATACCACCATTGCCATCACCCAGA ACTTTGCCAGCAGCACCAACTTCCCTGTTGTCTGGCACAAGACGGTAAGAGGGAGACCAA AGCTATCAAGGAAATGGTACAGGATCTTGAAGCAGGAGCACCCTGAGCTGGCAGTCCTGG CCGACTCGGTCGACCTGCAAGAGTCCACGGGGATCGCCTCCGACAGCTCCAGCGACTCGT CCAGCTCCTCCAGTTCCAGCTCATCCGACTCGGACTCAGAGTGCGAGTCTGGCTCCGAAG GCGACGGGACGACGCACCGCAGGAAGAAGCGGAGGACGTGCGGCATGGTGGGCAACGGGG ACGCCACCTCCCAGGACGACTGCGTGAGCAAGGAGCGCAGCTCCTCCAGGTGACCGCGCA CGCCTGCGCCTGTGCCTGTGTGGAAGGACGTGCCTGCGGCCGGGCCCCGGGGCGGCCTCG CGGTTCTGCAGAGAGGGGGCCGCAGAGCCAGGGAAGGAGGGCGTCTCGGAGCAGGAGTCC GCTCACTTGGCCTCTTCGATGGGGCTTTGCTGTTTCCAGTGCAAGTTAACGTGGCTTGTT TTATGCATAAAGGCGAGAATCTGCGTGGTTGGTGCCAAGGAAACCCTTTACCTTATTTAA TAAAAATTCAGTTCATCTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 23 entry(ies) | More info |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
| 230-621, gnl|bosTau2|chr19 (49908913-49909304) | |
| 230-621, gnl|canFam2|chr9 (7036470-7036044) | |
| 230-621, gnl|danRer3|chrNA (127023599-127023995) | |
| 230-621, gnl|dasNov1|scaffold_12055 (16478-16906) | |
| 230-621, gnl|echTel1|scaffold_315229 (48109-47681) | |
| 230-621, gnl|fr1|chrUn (320644443-320644874) | |
| 230-621, gnl|galGal2|chr18 (4077998-4077589) | |
| 230-621, gnl|hg17|chr17 (72233109-72233543) | |
| 230-621, gnl|Hg17|chr17 (72233533-72233142) | |
| 230-621, gnl|mm7|chr11 (116951346-116951776) | |
| 230-621, gnl|Mm7|chr11 (116951766-116951375) | |
| 230-621, gnl|monDom2|scaffold_18 (4206781-4207213) | |
| 230-621, gnl|panTro1|chr19 (75603318-75603753) | |
| 230-621, gnl|rheMac2|chr16 (72085930-72086360) | |
| 230-621, gnl|rn3|chr10 (106961980-106962407) | |
| 230-621, gnl|tetNig1|chrUn_random (46182580-46182179) | |
| 230-621, gnl|xenTro1|scaffold_135 (1634010-1633574) | |
| 904-1043, gnl|bosTau2|chr19 (49911241-49911380) | |
| 904-1043, gnl|Hg17|chr17 (72229613-72229474) | |
| 904-1043, gnl|Mm7|chr11 (116949593-116949454) | |
| 1180-1579, gnl|bosTau2|chr19 (49913501-49913911) | |
| 1180-1579, gnl|Hg17|chr17 (72226539-72226131) | |
| 1180-1579, gnl|Mm7|chr11 (116946810-116946478) |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 230-621, gnl|bosTau2|chr19 (49908913-49909304) | |
| 230-621, gnl|canFam2|chr9 (7036470-7036044) | |
| 230-621, gnl|danRer3|chrNA (127023599-127023995) | |
| 230-621, gnl|dasNov1|scaffold_12055 (16478-16906) | |
| 230-621, gnl|echTel1|scaffold_315229 (48109-47681) | |
| 230-621, gnl|fr1|chrUn (320644443-320644874) | |
| 230-621, gnl|galGal2|chr18 (4077998-4077589) | |
| 230-621, gnl|hg17|chr17 (72233109-72233543) | |
| 230-621, gnl|Hg17|chr17 (72233533-72233142) | |
| 230-621, gnl|mm7|chr11 (116951346-116951776) | |
| 230-621, gnl|Mm7|chr11 (116951766-116951375) | |
| 230-621, gnl|monDom2|scaffold_18 (4206781-4207213) | |
| 230-621, gnl|panTro1|chr19 (75603318-75603753) | |
| 230-621, gnl|rheMac2|chr16 (72085930-72086360) | |
| 230-621, gnl|rn3|chr10 (106961980-106962407) | |
| 230-621, gnl|tetNig1|chrUn_random (46182580-46182179) | |
| 230-621, gnl|xenTro1|scaffold_135 (1634010-1633574) | |
| 904-1043, gnl|bosTau2|chr19 (49911241-49911380) | |
| 904-1043, gnl|Hg17|chr17 (72229613-72229474) | |
| 904-1043, gnl|Mm7|chr11 (116949593-116949454) | |
| 1180-1579, gnl|bosTau2|chr19 (49913501-49913911) | |
| 1180-1579, gnl|Hg17|chr17 (72226539-72226131) | |
| 1180-1579, gnl|Mm7|chr11 (116946810-116946478) |
| Expressed library(ies): 5 entry(ies) | More info |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
| col (0.195008) | |
| duo (0.172801) | |
| pla (0.133672) | |
| ebs (0.118301) | |
| med (0.116252) |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| col (0.195008) | |
| duo (0.172801) | |
| pla (0.133672) | |
| ebs (0.118301) | |
| med (0.116252) |