Non-Coding RNA Search

Ss1.1-Pig4-TMW8064P22.5

Sequence:


               
               TACCTAGTGGCTCATGGCAGGATGAAAGAGAAAGAGGCCCGAGCCAAATTCCGCCAGATA
GTGTCTGCGGGGCAGTACTGTCACCAGAAGTTTATGGTTCATAGAGACTTAAAGGCAGAA
AACCTGCTCTGGGATGCTGATATGAACATCAAGATTGCAGACTTGGGCTTCAGCAACGAA
TTCACCTTGGGGAACAAGCTGGATACCTTCTGTGGCAGTCCCCCTTATGCTGCTCCAGAG
CTCTTCCAGGGCAAAAAATACGATGGACCTGAGGTGGATGTGTGGAGCCTGGGAGTTATC
CTCTATACACTGGTCAGCGGATCCCTGCCTTTTGATGGACAGAACCTCAAGGAGCTCCGG
GAGCGGGTACTGAGGGGGAAATACCGTATTCCGTTCTACATGTCCACAGACTGTGAAAAC
CTGCTTAAGAAATTTCTCATTCTCAATCCCAGCAAGAGAGGCACTTTAGAGCAAATCATG
AAAGATCGATGGATGAATGTGGGTCACGAAGATGATGAATTAAAGCCTTATGTGGAGCCA
CTCCCTGACTACAAGGACCCCAGGCGGACAGAGTTGATGGTGTCCATGGGTTACACACGG
GAAGAGATCCAGGACTCGCTGGTGGGCCAGAGGTACAATGAGGTGATGGCCACCTACCTG
CTCCTGGGCTACAAGAGCTCTGAGCTGGAAGGTGACACCATTACCTTGAAGCCCCGGCCT
TCAGCTGATCTGACCAATAGCGGTGCCCCTTCCCCCTCCCACAAGGTACAGCGCAGCGTC
TCAGCCAACCCCAAACAGCGGCGCTTTAGCGACCAGGCTGGTCCTGCCATCCCCACTTCC
AATTCCTACTCTAAGAAGACGCAGAGTAACAACGCAGAAAACAAGCGGCCTGAGGAAGAC
CGGGAGTCGGGGCGGAAGGCGGGCAGCACGGCCAGAGTGCCCGCCAGCCCCCTGCCTGGC
CTGGAGAGGAAGAAGACCACCCCCACCCCCTCCACG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TACCTAGTGGCTCATGGCAGGATGAAAGAGAAAGAGGCCCGAGCCAAATTCCGCCAGATA
GTGTCTGCGGGGCAGTACTGTCACCAGAAGTTTATGGTTCATAGAGACTTAAAGGCAGAA
AACCTGCTCTGGGATGCTGATATGAACATCAAGATTGCAGACTTGGGCTTCAGCAACGAA
TTCACCTTGGGGAACAAGCTGGATACCTTCTGTGGCAGTCCCCCTTATGCTGCTCCAGAG
CTCTTCCAGGGCAAAAAATACGATGGACCTGAGGTGGATGTGTGGAGCCTGGGAGTTATC
CTCTATACACTGGTCAGCGGATCCCTGCCTTTTGATGGACAGAACCTCAAGGAGCTCCGG
GAGCGGGTACTGAGGGGGAAATACCGTATTCCGTTCTACATGTCCACAGACTGTGAAAAC
CTGCTTAAGAAATTTCTCATTCTCAATCCCAGCAAGAGAGGCACTTTAGAGCAAATCATG
AAAGATCGATGGATGAATGTGGGTCACGAAGATGATGAATTAAAGCCTTATGTGGAGCCA
CTCCCTGACTACAAGGACCCCAGGCGGACAGAGTTGATGGTGTCCATGGGTTACACACGG
GAAGAGATCCAGGACTCGCTGGTGGGCCAGAGGTACAATGAGGTGATGGCCACCTACCTG
CTCCTGGGCTACAAGAGCTCTGAGCTGGAAGGTGACACCATTACCTTGAAGCCCCGGCCT
TCAGCTGATCTGACCAATAGCGGTGCCCCTTCCCCCTCCCACAAGGTACAGCGCAGCGTC
TCAGCCAACCCCAAACAGCGGCGCTTTAGCGACCAGGCTGGTCCTGCCATCCCCACTTCC
AATTCCTACTCTAAGAAGACGCAGAGTAACAACGCAGAAAACAAGCGGCCTGAGGAAGAC
CGGGAGTCGGGGCGGAAGGCGGGCAGCACGGCCAGAGTGCCCGCCAGCCCCCTGCCTGGC
CTGGAGAGGAAGAAGACCACCCCCACCCCCTCCACG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|14042209|dbj|BAB55152.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|14042209|dbj|BAB55152.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               817-935, - strand, RNAz p=0.953759

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               817-935, - strand, RNAz p=0.953759

Aligned organism(s): 8 entry(ies)

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Aligned organism(s): 8 entry(ies)

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               132-549, gnl|bosTau2|chr14 (18726347-18726756)
               

               
               132-549, gnl|Hg17|chr5 (157347800-157347392)
               


               
               569-687, gnl|bosTau2|chr29 (30618615-30618733)
               

               
               569-687, gnl|Hg17|chr11 (63425002-63425120)
               

               
               569-687, gnl|Mm7|chr19 (7104441-7104323)
               


               
               817-996, gnl|bosTau2|chr29 (30620065-30620244)
               

               
               817-996, gnl|Hg17|chr11 (63426651-63426830)
               

               
               817-996, gnl|Mm7|chr19 (7103067-7102894)

Aligned organism(s): 8 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               132-549, gnl|bosTau2|chr14 (18726347-18726756)
               

               
               132-549, gnl|Hg17|chr5 (157347800-157347392)
               


               
               569-687, gnl|bosTau2|chr29 (30618615-30618733)
               

               
               569-687, gnl|Hg17|chr11 (63425002-63425120)
               

               
               569-687, gnl|Mm7|chr19 (7104441-7104323)
               


               
               817-996, gnl|bosTau2|chr29 (30620065-30620244)
               

               
               817-996, gnl|Hg17|chr11 (63426651-63426830)
               

               
               817-996, gnl|Mm7|chr19 (7103067-7102894)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               med (0.116252)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               med (0.116252)

	132-549, gnl\|bosTau2\|chr14 (18726347-18726756)
	132-549, gnl\|Hg17\|chr5 (157347800-157347392)

	569-687, gnl\|bosTau2\|chr29 (30618615-30618733)
	569-687, gnl\|Hg17\|chr11 (63425002-63425120)
	569-687, gnl\|Mm7\|chr19 (7104441-7104323)

	817-996, gnl\|bosTau2\|chr29 (30620065-30620244)
	817-996, gnl\|Hg17\|chr11 (63426651-63426830)
	817-996, gnl\|Mm7\|chr19 (7103067-7102894)