Non-Coding RNA Search

Ss1.1-Pig4-TMW8065B11.3

Sequence:


               
               TCAGATTAAATTATTACCAGGATGTTTTCCCAGGTAACAGGAAAATGTAATGAATGAGAT
TGAGTTTTCTAAACTATAAAATGCTTCATAAACATAAGACATTAGATGTTTTCTATGTGA
ATAAAACTTATGTGAGGCAGGCATTATCTCTACAAAATTCTCATTGTGTGCGTAACCCAC
TACGAGAAAAATTGTATAAATATTTATACAAACTGTTTAAATACTTAAGTGAATTAATTA
TTCATATCAATTGCCTACTATGTGAACTCACTGTTAGAGGCATGAAAGATATGCACACAT
TTATCATTTTATTGTGCCTGTAAATGAGAATAAAGTAATACATATGTTAGCATTTTGTGA
ACTCTAAAGCACCATGTAAATATAACTATTGATCTTCTTATTTGGTGTGCCTGTACTAGT
TTACAAAATTGCATCATAGTTATACTATGAAAAAGAGAAAAAAAATTGAGGAAGGATTTT
TTTACTCTTGAACACTTTGAATATGATATTTAAAGGATTAAATGCCTGATGAATGAAAGA
CTAAATAATAATTTTCTATTATGTGCCAGTCTCCTGAATCAGGGCTGTGAAGATAATCCA
TTGTTTTATTGTGTTCTAGGTAGCAGAATGTAATGTGTAAAATCAATTTGTAAGTCTTAA
ACTGGCATACATTTCTGCTGAATGAACATTGATTAGTTACTCTTTCTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCAGATTAAATTATTACCAGGATGTTTTCCCAGGTAACAGGAAAATGTAATGAATGAGAT
TGAGTTTTCTAAACTATAAAATGCTTCATAAACATAAGACATTAGATGTTTTCTATGTGA
ATAAAACTTATGTGAGGCAGGCATTATCTCTACAAAATTCTCATTGTGTGCGTAACCCAC
TACGAGAAAAATTGTATAAATATTTATACAAACTGTTTAAATACTTAAGTGAATTAATTA
TTCATATCAATTGCCTACTATGTGAACTCACTGTTAGAGGCATGAAAGATATGCACACAT
TTATCATTTTATTGTGCCTGTAAATGAGAATAAAGTAATACATATGTTAGCATTTTGTGA
ACTCTAAAGCACCATGTAAATATAACTATTGATCTTCTTATTTGGTGTGCCTGTACTAGT
TTACAAAATTGCATCATAGTTATACTATGAAAAAGAGAAAAAAAATTGAGGAAGGATTTT
TTTACTCTTGAACACTTTGAATATGATATTTAAAGGATTAAATGCCTGATGAATGAAAGA
CTAAATAATAATTTTCTATTATGTGCCAGTCTCCTGAATCAGGGCTGTGAAGATAATCCA
TTGTTTTATTGTGTTCTAGGTAGCAGAATGTAATGTGTAAAATCAATTTGTAAGTCTTAA
ACTGGCATACATTTCTGCTGAATGAACATTGATTAGTTACTCTTTCTT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               197-305, - strand, RNAz p=0.533255

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               197-305, - strand, RNAz p=0.533255

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               7-145, gnl|bosTau2|chr24 (6310084-6310222)
               

               
               7-145, gnl|Mm7|chrX (98791895-98791768)
               


               
               158-708, gnl|bosTau2|chr24 (6310428-6311004)
               

               
               158-708, gnl|Hg17|chrX (72827461-72826919)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               7-145, gnl|bosTau2|chr24 (6310084-6310222)
               

               
               7-145, gnl|Mm7|chrX (98791895-98791768)
               


               
               158-708, gnl|bosTau2|chr24 (6310428-6311004)
               

               
               158-708, gnl|Hg17|chrX (72827461-72826919)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               fce (0.271592)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.271592)

	7-145, gnl\|bosTau2\|chr24 (6310084-6310222)
	7-145, gnl\|Mm7\|chrX (98791895-98791768)

	158-708, gnl\|bosTau2\|chr24 (6310428-6311004)
	158-708, gnl\|Hg17\|chrX (72827461-72826919)