Non-Coding RNA Search

Ss1.1-Pig4-TMW8065C01.3

Sequence:


               
               TTGTTACAATTCTAGATCTACAGGGATATAGGAAGCCCAAGGTGAAAAGCATTTTCCAAG
GGGGACTTTATGAATCAGGGTTAGGCTCCTATTTAAAAGATAGAGCCAGGTTTTTGTTAA
ATAGAGCCCAAATTGTGCAAAAGTATTAGTTGTTTTTGTTTTTTTTTTTAAACTTTGTTT
TATCAAGTCACTGTTATGTAGAAGAAAGCCATGGTAGACTGGTATAAATGTAAATATGTC
AAAGGAGAAACTCACTGTTCAAGAGAAGTTACCTTGTGAGAAAAGTTAAAGTGCTTTTTT
CCCTATCTAATGACAACTTGGAAGTTACATACTTCTCAAAAGATTTTATTGACCAGTATA
TCAAATCAGAATGTAAACATGAATTCTTGCATATATTAAAAATTGTGTAGGAACATCCGA
ACATGAATACTATTTGTGGTACTTAAGAAATGGATTATCATTATGTGATGTCGGGAGATT
GCAATGCAACTTTATGCCAATAAAATGTAATTTAACTGCCCCAGATATTGTTGAATACTC
AACGAAAAGAAAAGCTTTCATCTCTCTGAAGTTTTATGCTTTGATTTTTTTTCTTTCTTT
ATCTTTTTGTTTTTCCCTAGGTACTAATTTTCATTTTAATTTGAGAGGGAGCAGTGTAAA
TCTTACTTGTATTCAGTAGTGTATCTCATAGATACAGACAAGGCAAGAGATAAGCTCTTC
AAATAGTGTTTAATATTGATGGGGGGAGAGAAAAAGTGTATTAAAGATATTATACTATAT
ACATTTTGTATATCATTAAATCTTTAAAAGAAATTAAATAAATTTATTCTTGTTTACAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTGTTACAATTCTAGATCTACAGGGATATAGGAAGCCCAAGGTGAAAAGCATTTTCCAAG
GGGGACTTTATGAATCAGGGTTAGGCTCCTATTTAAAAGATAGAGCCAGGTTTTTGTTAA
ATAGAGCCCAAATTGTGCAAAAGTATTAGTTGTTTTTGTTTTTTTTTTTAAACTTTGTTT
TATCAAGTCACTGTTATGTAGAAGAAAGCCATGGTAGACTGGTATAAATGTAAATATGTC
AAAGGAGAAACTCACTGTTCAAGAGAAGTTACCTTGTGAGAAAAGTTAAAGTGCTTTTTT
CCCTATCTAATGACAACTTGGAAGTTACATACTTCTCAAAAGATTTTATTGACCAGTATA
TCAAATCAGAATGTAAACATGAATTCTTGCATATATTAAAAATTGTGTAGGAACATCCGA
ACATGAATACTATTTGTGGTACTTAAGAAATGGATTATCATTATGTGATGTCGGGAGATT
GCAATGCAACTTTATGCCAATAAAATGTAATTTAACTGCCCCAGATATTGTTGAATACTC
AACGAAAAGAAAAGCTTTCATCTCTCTGAAGTTTTATGCTTTGATTTTTTTTCTTTCTTT
ATCTTTTTGTTTTTCCCTAGGTACTAATTTTCATTTTAATTTGAGAGGGAGCAGTGTAAA
TCTTACTTGTATTCAGTAGTGTATCTCATAGATACAGACAAGGCAAGAGATAAGCTCTTC
AAATAGTGTTTAATATTGATGGGGGGAGAGAAAAAGTGTATTAAAGATATTATACTATAT
ACATTTTGTATATCATTAAATCTTTAAAAGAAATTAAATAAATTTATTCTTGTTTACAAA
AAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               5-838, gnl|bosTau2|chr3 (16064765-16065602)
               

               
               5-838, gnl|Hg17|chr15 (48640643-48639784)
               

               
               5-838, gnl|Mm7|chr2 (126533241-126532418)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-838, gnl|bosTau2|chr3 (16064765-16065602)
               

               
               5-838, gnl|Hg17|chr15 (48640643-48639784)
               

               
               5-838, gnl|Mm7|chr2 (126533241-126532418)

Expressed library(ies): 11 entry(ies)

More info

Expressed library(ies): 11 entry(ies)

Help | Less info


               
               tra (0.369276)
               

               
               sin (0.349895)
               

               
               tes (0.207814)
               

               
               fli (0.202881)
               

               
               aor (0.195274)
               

               
               fat (0.147427)
               

               
               hyp (0.142837)
               

               
               hlv (0.139256)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               thg (0.126791)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tra (0.369276)
               

               
               sin (0.349895)
               

               
               tes (0.207814)
               

               
               fli (0.202881)
               

               
               aor (0.195274)
               

               
               fat (0.147427)
               

               
               hyp (0.142837)
               

               
               hlv (0.139256)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               thg (0.126791)

	5-838, gnl\|bosTau2\|chr3 (16064765-16065602)
	5-838, gnl\|Hg17\|chr15 (48640643-48639784)
	5-838, gnl\|Mm7\|chr2 (126533241-126532418)

	tra (0.369276)
	sin (0.349895)
	tes (0.207814)
	fli (0.202881)
	aor (0.195274)
	fat (0.147427)
	hyp (0.142837)
	hlv (0.139256)
	kid (0.129735)
	ret (0.128733)
	thg (0.126791)