Non-Coding RNA Search

Ss1.1-Pig4-TMW8065C17.3

Sequence:


               
               TCTGAAGGTCCACACGGCATTGAAAAGTTAGAGACTGACTGATCTTTGATATGTTCTAAA
AGGAGCATTGACAGTTTTATTTCTCTTGCTTCTTTGTACTTTCTAAGTGGAATTTTAGGG
TCACTATGAGGTGCAGTCCTCTAACCAGAAAGTCTTGGCTGTGGTTCCTAAAACCTGGGG
CCTGTGGGCTCCCCCATGGAGTCAGGCCAGCAGGAAACCACCGACTCTTCAAGAGTTCCT
GCAGCCCTCAGTTGTGTGCTTTTACTAACCATGCCCAGTGTGGCTTAACAGGTCAGTGGA
TTGTCTTAACCAAGGTACCTATGAAAAATCCTGGCTCTTGTGTGTGGTGGACTCATCATT
TGGACCTTCTTGCATCACTAAACATGTACATATTAGATCATCTAAAGTCATACTGTGATA
CCAGATGTCCCCATTATTAGTACGTGCAGATAAGCTCTCAGACTGATGCTCTTTGGTGTC
TAAAATGCAACCAGCAAGTTCCTGTCAAAACATTCCAATCCTTTCACTTGTGTGAAGCAA
AACTCCTGACCAACCAGGGGCTGATCCTGAGAGCTCAGGATGGCCGTGCAGACACAAGCC
TTCCAACCTGGTGGCTAGGTCATTGCGTGTGTGCGGTGCATGACGCCACGTGTGCACACA
GCTCCGGCTGCTGCAGGGATAGCCACAGGCAAGGGCAAGGGGGGCGCTCAAGGCTGGGTG
GGGGTCTCAGAGTCAGGTGCGCTGCCCACATGCAGACCATTCAGAGGAGACTATTGACCT
TAATTTGCTTTTATGTCAATACGGTTTTTAAATTGGTAACTTTTATATAGTACGGTTAAC
AGTATGTTCATCCACATATACTGCACATGTGCTTTGGGTCCTTCCATAATACTTTTATAT
TTGTAAATCAATGTTTTGGAGCAATCCCAAGTTTAAGGGAAATATTTTTGTAAATGTAGT
GGTTTTGGAAATTCGAACAGTCCTTTTGCTTATGCATTTTAAAGCATCTATGCTTTAAAA
TTGTCATGCTGACGTCTGAAATATACTCTAGTGCGGACGAGAGGCAGGTACCAGCAGAGT
GAATGCATGGTCTCCCCGCTGCAGCCCCAGTGCAGCCTAGGGGTCAAAAGCAACAGGGAG
TCCACAGGAGTGCTCTAGGCTCACACCAGGGTTACCTGAAGCTCATTGCCTTTTTCATGC
TGTTTATCCATGTAGAGCACTCAAGAAAGTTCTGAAACTGCTTTGTATCTGCTTTGTACT
GTTGGTGCCTTCCTGGTATTGTATGTACCCCCAAATTCTGCATAGACTATTTAGTGTAAT
GGTAAGTGTAAAACAAATGTTAAAGGAAGATTTTATTAAGAATCTGAATGTTTATTCATT
ATATTGTTACAATTTAACATTTATTTGTGGTTTTGTGATTTGGTTAATCTGTATAAAAAT
TGTAAGTAGAAAGGTTTATATTTCATCTTAATTCTTTTGATGTTGTAAACGTACTTTCTG
AAGAATGGATTATTTGAATGTTTATGGCACCTGACTTGTTAAAAAAAAAAAAACCTACGA
AAAAAATTAGAATCATTAAATTGTGTCCGTGTTAAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCTGAAGGTCCACACGGCATTGAAAAGTTAGAGACTGACTGATCTTTGATATGTTCTAAA
AGGAGCATTGACAGTTTTATTTCTCTTGCTTCTTTGTACTTTCTAAGTGGAATTTTAGGG
TCACTATGAGGTGCAGTCCTCTAACCAGAAAGTCTTGGCTGTGGTTCCTAAAACCTGGGG
CCTGTGGGCTCCCCCATGGAGTCAGGCCAGCAGGAAACCACCGACTCTTCAAGAGTTCCT
GCAGCCCTCAGTTGTGTGCTTTTACTAACCATGCCCAGTGTGGCTTAACAGGTCAGTGGA
TTGTCTTAACCAAGGTACCTATGAAAAATCCTGGCTCTTGTGTGTGGTGGACTCATCATT
TGGACCTTCTTGCATCACTAAACATGTACATATTAGATCATCTAAAGTCATACTGTGATA
CCAGATGTCCCCATTATTAGTACGTGCAGATAAGCTCTCAGACTGATGCTCTTTGGTGTC
TAAAATGCAACCAGCAAGTTCCTGTCAAAACATTCCAATCCTTTCACTTGTGTGAAGCAA
AACTCCTGACCAACCAGGGGCTGATCCTGAGAGCTCAGGATGGCCGTGCAGACACAAGCC
TTCCAACCTGGTGGCTAGGTCATTGCGTGTGTGCGGTGCATGACGCCACGTGTGCACACA
GCTCCGGCTGCTGCAGGGATAGCCACAGGCAAGGGCAAGGGGGGCGCTCAAGGCTGGGTG
GGGGTCTCAGAGTCAGGTGCGCTGCCCACATGCAGACCATTCAGAGGAGACTATTGACCT
TAATTTGCTTTTATGTCAATACGGTTTTTAAATTGGTAACTTTTATATAGTACGGTTAAC
AGTATGTTCATCCACATATACTGCACATGTGCTTTGGGTCCTTCCATAATACTTTTATAT
TTGTAAATCAATGTTTTGGAGCAATCCCAAGTTTAAGGGAAATATTTTTGTAAATGTAGT
GGTTTTGGAAATTCGAACAGTCCTTTTGCTTATGCATTTTAAAGCATCTATGCTTTAAAA
TTGTCATGCTGACGTCTGAAATATACTCTAGTGCGGACGAGAGGCAGGTACCAGCAGAGT
GAATGCATGGTCTCCCCGCTGCAGCCCCAGTGCAGCCTAGGGGTCAAAAGCAACAGGGAG
TCCACAGGAGTGCTCTAGGCTCACACCAGGGTTACCTGAAGCTCATTGCCTTTTTCATGC
TGTTTATCCATGTAGAGCACTCAAGAAAGTTCTGAAACTGCTTTGTATCTGCTTTGTACT
GTTGGTGCCTTCCTGGTATTGTATGTACCCCCAAATTCTGCATAGACTATTTAGTGTAAT
GGTAAGTGTAAAACAAATGTTAAAGGAAGATTTTATTAAGAATCTGAATGTTTATTCATT
ATATTGTTACAATTTAACATTTATTTGTGGTTTTGTGATTTGGTTAATCTGTATAAAAAT
TGTAAGTAGAAAGGTTTATATTTCATCTTAATTCTTTTGATGTTGTAAACGTACTTTCTG
AAGAATGGATTATTTGAATGTTTATGGCACCTGACTTGTTAAAAAAAAAAAAACCTACGA
AAAAAATTAGAATCATTAAATTGTGTCCGTGTTAAC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               1086-1203, - strand, RNAz p=0.878179

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1086-1203, - strand, RNAz p=0.878179

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               333-1594, gnl|bosTau2|chr17 (45529457-45528210)
               

               
               333-1594, gnl|Hg17|chr22 (20440550-20439171)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               333-1594, gnl|bosTau2|chr17 (45529457-45528210)
               

               
               333-1594, gnl|Hg17|chr22 (20440550-20439171)

Expressed library(ies): 35 entry(ies)

More info

Expressed library(ies): 35 entry(ies)

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               cbr (2.04761)
               

               
               cje (0.660939)
               

               
               rec (0.519211)
               

               
               fco (0.471624)
               

               
               kid (0.389206)
               

               
               elu (0.385356)
               

               
               eye (0.341006)
               

               
               sme (0.305437)
               

               
               lun (0.300978)
               

               
               ski (0.29347)
               

               
               cte (0.29274)
               

               
               liv (0.292569)
               

               
               hlv (0.278513)
               

               
               thg (0.253582)
               

               
               pan (0.23596)
               

               
               ecc (0.23007)
               

               
               ece (0.229305)
               

               
               spc (0.226732)
               

               
               cty (0.20816)
               

               
               col (0.195008)
               

               
               gul (0.177588)
               

               
               fty (0.17584)
               

               
               nco (0.161734)
               

               
               csk (0.140746)
               

               
               cst (0.140036)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               eep (0.122564)
               

               
               eru (0.120048)
               

               
               clu (0.119646)
               

               
               cbl (0.114797)
               

               
               jca (0.11396)
               

               
               eje (0.0988338)

Expressed library(ies): 35 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbr (2.04761)
               

               
               cje (0.660939)
               

               
               rec (0.519211)
               

               
               fco (0.471624)
               

               
               kid (0.389206)
               

               
               elu (0.385356)
               

               
               eye (0.341006)
               

               
               sme (0.305437)
               

               
               lun (0.300978)
               

               
               ski (0.29347)
               

               
               cte (0.29274)
               

               
               liv (0.292569)
               

               
               hlv (0.278513)
               

               
               thg (0.253582)
               

               
               pan (0.23596)
               

               
               ecc (0.23007)
               

               
               ece (0.229305)
               

               
               spc (0.226732)
               

               
               cty (0.20816)
               

               
               col (0.195008)
               

               
               gul (0.177588)
               

               
               fty (0.17584)
               

               
               nco (0.161734)
               

               
               csk (0.140746)
               

               
               cst (0.140036)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               eep (0.122564)
               

               
               eru (0.120048)
               

               
               clu (0.119646)
               

               
               cbl (0.114797)
               

               
               jca (0.11396)
               

               
               eje (0.0988338)

	333-1594, gnl\|bosTau2\|chr17 (45529457-45528210)
	333-1594, gnl\|Hg17\|chr22 (20440550-20439171)

	cbr (2.04761)
	cje (0.660939)
	rec (0.519211)
	fco (0.471624)
	kid (0.389206)
	elu (0.385356)
	eye (0.341006)
	sme (0.305437)
	lun (0.300978)
	ski (0.29347)
	cte (0.29274)
	liv (0.292569)
	hlv (0.278513)
	thg (0.253582)
	pan (0.23596)
	ecc (0.23007)
	ece (0.229305)
	spc (0.226732)
	cty (0.20816)
	col (0.195008)
	gul (0.177588)
	fty (0.17584)
	nco (0.161734)
	csk (0.140746)
	cst (0.140036)
	pla (0.133672)
	nmm (0.132802)
	ova (0.129132)
	sug (0.127291)
	eep (0.122564)
	eru (0.120048)
	clu (0.119646)
	cbl (0.114797)
	jca (0.11396)
	eje (0.0988338)