Non-Coding RNA Search

Ss1.1-Pig4-TMW8065D10.3

Sequence:


               
               GTAGGACCAAAAGCAGTTTGGCGTTTGTGAGGTCTTGTTGTAGTCGGAAGATTCTTCAAT
CACTATGTCAACTGACACAGATGTGTCTCTTTCTTCATATGATGAGGATCAGGGATCTAA
ACTTATCCGAAAAGCAAAAGAGGCACCATTTGTCCCCATTGGAATGGCAGGTTTTGCTGC
AATCGTTGCATATGGATTATATAAATTGAAGAGCAGAGGAAATACTAAAATGTCTGTTCA
TCTGATCCACATGCGTGTGGCAGCCCAAGGCTTTGTTGTGGGAGCAATGACTCTTGGTAT
GGGTTACTCCATGTATCGAGAATTCTGGGCAAAACCTAAACCTTAGAAGAAGAGATGCTG
TCTTGGTGGTGCTTGTCTTAGTTAGACATCTCATATTGAGGTTATATGTTTATACTGAGA
ATAAATTAAATGGGTCAGACATTAACGCAGTAATTTGAATACTGGTTTTCTTTCTTGGCT
TGATTTGCCTGGTAACCAAGTTACTGGTGACCAGTTAAGTAGCTAGGTTATTCAGGGGAG
TCACATTAGCACAAAAGAAGCAGGTCACCTTTAAATGCATTTGGTAGTGGTAAAATGTTG
ACCTTCCTAAACTTTTCTGTTGCAATTAGTTCTAAAGAAGACAACTTGCCAATCCTGAAA
TACTCCTAGCTGCTGCTCACATGCTTTTGATGTAATGTAGAAATCCTATTTACTCCAGTT
AATTTAACTCTTTGCCCTGTGGACTGAGTATTCAGTTTTAAAGGGCTGATTGGCTCTTGA
GGAGCCCTTTCAGAATAGTGCATGCAGTATAATATTATAAGCCTTCTACAACTGATAGTA
TGTTTGGTGTGTTTTTAAACCAAATATAAAAAGTTGGTAACAGCAACGTAGAAGTAGTAC
CTATTTCAGAATCATACTTGTAAACATGAGAATAATTTAATTATGGATCCCCATTTAGCT
CTTTCATAATTGCAGAGTTATGTTTTGCTGCTGTTAGAATATTTAAATGTCATCTCGAAA
TAGAAATAATTTTAAGTGCTAATGCAAAAGTAAATGAAAAATTCTTTTTAAACGTGTGCA
GTAAGTTTATTTTCTCTGTAAGAATCATAAATGTTAAACTAAATAAATTGCCTATAATGG
AAGTGATTGGTTTATGAGCAGGCTTGTTTGGTCAGACATTATACCCAAACTTTGGTAGAC
CACAGAATGCTTTGTTGCACCTGTGAAATTCTCTTGTCTAACCTGAATTTACATTCCATG
GTGATAACATGGTAAATGTAGTGTTAATAAAATAAGCGAACACACCAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTAGGACCAAAAGCAGTTTGGCGTTTGTGAGGTCTTGTTGTAGTCGGAAGATTCTTCAAT
CACTATGTCAACTGACACAGATGTGTCTCTTTCTTCATATGATGAGGATCAGGGATCTAA
ACTTATCCGAAAAGCAAAAGAGGCACCATTTGTCCCCATTGGAATGGCAGGTTTTGCTGC
AATCGTTGCATATGGATTATATAAATTGAAGAGCAGAGGAAATACTAAAATGTCTGTTCA
TCTGATCCACATGCGTGTGGCAGCCCAAGGCTTTGTTGTGGGAGCAATGACTCTTGGTAT
GGGTTACTCCATGTATCGAGAATTCTGGGCAAAACCTAAACCTTAGAAGAAGAGATGCTG
TCTTGGTGGTGCTTGTCTTAGTTAGACATCTCATATTGAGGTTATATGTTTATACTGAGA
ATAAATTAAATGGGTCAGACATTAACGCAGTAATTTGAATACTGGTTTTCTTTCTTGGCT
TGATTTGCCTGGTAACCAAGTTACTGGTGACCAGTTAAGTAGCTAGGTTATTCAGGGGAG
TCACATTAGCACAAAAGAAGCAGGTCACCTTTAAATGCATTTGGTAGTGGTAAAATGTTG
ACCTTCCTAAACTTTTCTGTTGCAATTAGTTCTAAAGAAGACAACTTGCCAATCCTGAAA
TACTCCTAGCTGCTGCTCACATGCTTTTGATGTAATGTAGAAATCCTATTTACTCCAGTT
AATTTAACTCTTTGCCCTGTGGACTGAGTATTCAGTTTTAAAGGGCTGATTGGCTCTTGA
GGAGCCCTTTCAGAATAGTGCATGCAGTATAATATTATAAGCCTTCTACAACTGATAGTA
TGTTTGGTGTGTTTTTAAACCAAATATAAAAAGTTGGTAACAGCAACGTAGAAGTAGTAC
CTATTTCAGAATCATACTTGTAAACATGAGAATAATTTAATTATGGATCCCCATTTAGCT
CTTTCATAATTGCAGAGTTATGTTTTGCTGCTGTTAGAATATTTAAATGTCATCTCGAAA
TAGAAATAATTTTAAGTGCTAATGCAAAAGTAAATGAAAAATTCTTTTTAAACGTGTGCA
GTAAGTTTATTTTCTCTGTAAGAATCATAAATGTTAAACTAAATAAATTGCCTATAATGG
AAGTGATTGGTTTATGAGCAGGCTTGTTTGGTCAGACATTATACCCAAACTTTGGTAGAC
CACAGAATGCTTTGTTGCACCTGTGAAATTCTCTTGTCTAACCTGAATTTACATTCCATG
GTGATAACATGGTAAATGTAGTGTTAATAAAATAAGCGAACACACCAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|57103544|ref|XP_534235.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|57103544|ref|XP_534235.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               440-596, + strand, RNAz p=0.991685

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               440-596, + strand, RNAz p=0.991685

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               32-1328, gnl|bosTau2|chr10 (7579823-7581111)
               

               
               32-1328, gnl|Hg17|chr12 (51822063-51823372)
               

               
               32-1328, gnl|Mm7|chr9 (121553857-121549805)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               32-1328, gnl|bosTau2|chr10 (7579823-7581111)
               

               
               32-1328, gnl|Hg17|chr12 (51822063-51823372)
               

               
               32-1328, gnl|Mm7|chr9 (121553857-121549805)

Expressed library(ies): 50 entry(ies)

More info

Expressed library(ies): 50 entry(ies)

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               fco (2.35812)
               

               
               sin (1.04969)
               

               
               lin (1.01922)
               

               
               isp (0.902256)
               

               
               hea (0.817996)
               

               
               col (0.780031)
               

               
               duo (0.691204)
               

               
               ste (0.676041)
               

               
               tbr (0.616713)
               

               
               bfe (0.599431)
               

               
               fce (0.543183)
               

               
               nco (0.485201)
               

               
               mgp (0.461361)
               

               
               cty (0.41632)
               

               
               aor (0.390549)
               

               
               kid (0.389206)
               

               
               fty (0.351679)
               

               
               rec (0.346141)
               

               
               fat (0.294855)
               

               
               hyp (0.285673)
               

               
               ret (0.257467)
               

               
               thg (0.253582)
               

               
               cbl (0.229595)
               

               
               nms (0.213858)
               

               
               tes (0.207814)
               

               
               jej (0.197844)
               

               
               fcc (0.197785)
               

               
               nlu (0.191681)
               

               
               nep (0.183925)
               

               
               sag (0.182715)
               

               
               gul (0.177588)
               

               
               fbs (0.175346)
               

               
               eye (0.170503)
               

               
               lun (0.150489)
               

               
               spl (0.143184)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               hlv (0.139256)
               

               
               ssp (0.13552)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               ute (0.132784)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               tra (0.123092)
               

               
               eep (0.122564)
               

               
               pgl (0.118483)
               

               
               med (0.116252)
               

               
               jca (0.11396)
               

               
               ldo (0.0970026)

Expressed library(ies): 50 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fco (2.35812)
               

               
               sin (1.04969)
               

               
               lin (1.01922)
               

               
               isp (0.902256)
               

               
               hea (0.817996)
               

               
               col (0.780031)
               

               
               duo (0.691204)
               

               
               ste (0.676041)
               

               
               tbr (0.616713)
               

               
               bfe (0.599431)
               

               
               fce (0.543183)
               

               
               nco (0.485201)
               

               
               mgp (0.461361)
               

               
               cty (0.41632)
               

               
               aor (0.390549)
               

               
               kid (0.389206)
               

               
               fty (0.351679)
               

               
               rec (0.346141)
               

               
               fat (0.294855)
               

               
               hyp (0.285673)
               

               
               ret (0.257467)
               

               
               thg (0.253582)
               

               
               cbl (0.229595)
               

               
               nms (0.213858)
               

               
               tes (0.207814)
               

               
               jej (0.197844)
               

               
               fcc (0.197785)
               

               
               nlu (0.191681)
               

               
               nep (0.183925)
               

               
               sag (0.182715)
               

               
               gul (0.177588)
               

               
               fbs (0.175346)
               

               
               eye (0.170503)
               

               
               lun (0.150489)
               

               
               spl (0.143184)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               hlv (0.139256)
               

               
               ssp (0.13552)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               ute (0.132784)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               tra (0.123092)
               

               
               eep (0.122564)
               

               
               pgl (0.118483)
               

               
               med (0.116252)
               

               
               jca (0.11396)
               

               
               ldo (0.0970026)

	32-1328, gnl\|bosTau2\|chr10 (7579823-7581111)
	32-1328, gnl\|Hg17\|chr12 (51822063-51823372)
	32-1328, gnl\|Mm7\|chr9 (121553857-121549805)

	fco (2.35812)
	sin (1.04969)
	lin (1.01922)
	isp (0.902256)
	hea (0.817996)
	col (0.780031)
	duo (0.691204)
	ste (0.676041)
	tbr (0.616713)
	bfe (0.599431)
	fce (0.543183)
	nco (0.485201)
	mgp (0.461361)
	cty (0.41632)
	aor (0.390549)
	kid (0.389206)
	fty (0.351679)
	rec (0.346141)
	fat (0.294855)
	hyp (0.285673)
	ret (0.257467)
	thg (0.253582)
	cbl (0.229595)
	nms (0.213858)
	tes (0.207814)
	jej (0.197844)
	fcc (0.197785)
	nlu (0.191681)
	nep (0.183925)
	sag (0.182715)
	gul (0.177588)
	fbs (0.175346)
	eye (0.170503)
	lun (0.150489)
	spl (0.143184)
	pty (0.142714)
	lnt (0.142308)
	hlv (0.139256)
	ssp (0.13552)
	pla (0.133672)
	nmm (0.132802)
	ute (0.132784)
	ova (0.129132)
	sug (0.127291)
	tra (0.123092)
	eep (0.122564)
	pgl (0.118483)
	med (0.116252)
	jca (0.11396)
	ldo (0.0970026)