Non-Coding RNA Search

Ss1.1-Pig4-TMW8065D14.3

Sequence:


               
               GACTTAGAAGAAGTAAAGGTAGATCACCGTCCGTGTAGGCCACAGATATCTATACAAGTT
TCTAATTTCAATACGGATAATACTACATCTCAGCCAAAACAAAAGTCAGACACTGTGCTC
CTTCCAGCAAAGGATCTGAAAGAAAAGGACTTTCATTCAGTATTTTGTCATGATTCTGAT
CTATTAGGAGTAAACAGTTCACAGGAGCACCTAACAATTCAGGCAAAGACTCCATCCCAA
AGCCCTCCTGAGGAACCCAATGCATGTGACATCAAGAATATGGATAGCTCACCTTCTGGT
AAAATCCATCGGAAAGTGAAAATATTATTAGGAAGAAATAAAAAAGAAAATCTGGAACCA
AATGTGGAGTTAAATAAGAAAAGAACTGAATGTCTTACTACACAGGAAGAAAACAGAATT
TGTAGCTCACCACTGCAGTCTCTACGGGACTTATTTCAGACTAGTGAAGAGAAGTCAGAA
TTTTTGGGTTTCACAAGCTACACTGAAAAGAGTGGTATATGTGATGTTTTAGATATTTGG
GAAGAGGAAAATTCAAATCTGTTATCAATGTTTTTCTCTTCCCCTTCAACTTCAACATTT
ACTGGCTTTTAGACTTAAAAAATACATACCTTTCAGAAGCAATGAAGATCACATTCTTGA
AATTTTTATAAATATGTATAAAAATTCTTAAGCTTTGGAGCAGCTTGCCAATTTTGTTTA
CAGAACCAAATGTAAATATTAACAATAAAAGTGATGTTTGCATTTTTCTACAGAATTAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GACTTAGAAGAAGTAAAGGTAGATCACCGTCCGTGTAGGCCACAGATATCTATACAAGTT
TCTAATTTCAATACGGATAATACTACATCTCAGCCAAAACAAAAGTCAGACACTGTGCTC
CTTCCAGCAAAGGATCTGAAAGAAAAGGACTTTCATTCAGTATTTTGTCATGATTCTGAT
CTATTAGGAGTAAACAGTTCACAGGAGCACCTAACAATTCAGGCAAAGACTCCATCCCAA
AGCCCTCCTGAGGAACCCAATGCATGTGACATCAAGAATATGGATAGCTCACCTTCTGGT
AAAATCCATCGGAAAGTGAAAATATTATTAGGAAGAAATAAAAAAGAAAATCTGGAACCA
AATGTGGAGTTAAATAAGAAAAGAACTGAATGTCTTACTACACAGGAAGAAAACAGAATT
TGTAGCTCACCACTGCAGTCTCTACGGGACTTATTTCAGACTAGTGAAGAGAAGTCAGAA
TTTTTGGGTTTCACAAGCTACACTGAAAAGAGTGGTATATGTGATGTTTTAGATATTTGG
GAAGAGGAAAATTCAAATCTGTTATCAATGTTTTTCTCTTCCCCTTCAACTTCAACATTT
ACTGGCTTTTAGACTTAAAAAATACATACCTTTCAGAAGCAATGAAGATCACATTCTTGA
AATTTTTATAAATATGTATAAAAATTCTTAAGCTTTGGAGCAGCTTGCCAATTTTGTTTA
CAGAACCAAATGTAAATATTAACAATAAAAGTGATGTTTGCATTTTTCTACAGAATTAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               7-201, gnl|bosTau2|chr5 (20858062-20858255)
               

               
               7-201, gnl|Hg17|chr10 (65599329-65599129)
               

               
               7-201, gnl|Mm7|chr5 (8435463-8435271)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               7-201, gnl|bosTau2|chr5 (20858062-20858255)
               

               
               7-201, gnl|Hg17|chr10 (65599329-65599129)
               

               
               7-201, gnl|Mm7|chr5 (8435463-8435271)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               pla (0.401016)
               

               
               tes (0.207814)
               

               
               gul (0.177588)
               

               
               mga (0.160205)
               

               
               liv (0.146284)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               sug (0.127291)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.401016)
               

               
               tes (0.207814)
               

               
               gul (0.177588)
               

               
               mga (0.160205)
               

               
               liv (0.146284)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               sug (0.127291)

	7-201, gnl\|bosTau2\|chr5 (20858062-20858255)
	7-201, gnl\|Hg17\|chr10 (65599329-65599129)
	7-201, gnl\|Mm7\|chr5 (8435463-8435271)

	pla (0.401016)
	tes (0.207814)
	gul (0.177588)
	mga (0.160205)
	liv (0.146284)
	ova (0.129132)
	ret (0.128733)
	sug (0.127291)