Ss1.1-Pig4-TMW8065D15.3
|
CCAAAAGGTGTTTTACTAAGTAGAGTGCCGAAAGTTCTCTCACGGGAGTAAGGTGATGTG
AGCATTTCTCGGGTACAGCTGGGGTCCCCGTGGGGGAGGAAGGCCGTCCAGGGAAAAGGA
GCCTCTCAGGAGATGACCCTCAGGCCGGGCTTGCTCCCCTCCAGGGCCTGCAGGCGGTCC
TCCACCTCCTCCGTCCAGTAGGTGTCGTACAGGACCAGCTGCTCCAGGGCGCAGCCCGGC
TGCTCCAGGCTCCCCAGCAGCTGCAGGACGCCCGGGTCGCCCACACAGTTGTTGCTCAGG
TCCAGCTCTCGCAGGCTGCGGTTGGCCAGCAGGAGCGAGGCGAGGCTGCTGCAGCCGCTG
TTGGTCACCTCACAGTCCCCAAGACAGAGCACCCGCAGTGTGGTGCCCGGCTGGCTCAGG
GCCTGGCACAGCTCCTGGATGCCAGAGTCACCCAGCTTGTTGCTGCTCAACTGAAGTTCC
AGGAGATGCTTGTTCTGGGTCAGCATCAAGCTGACGTGCTGGCAGCAGGCCGCCGTGAGG
CTGCAGGACTTCACCCACAGGGACTCCAGCTGGCAGCCGGGCTGCAGCAGGCTCTCGCAC
AGCAGCCGGGCGCCCTCGTCGCCCAGCTTGTTGCCCGCCAGACTGAGCTCCTTCAGGGTC
TCCTTGGCCTGGAGGACACGGCAGAGGTCTCTGCAGCCACTGGCGGTGATGTCACACTCC
CAGAGCCACAGGGTCTTGAGGCGGGAGGCGGGGCTCAAGAGCCCGGGGCACAGCTCGGCT
ATGCCCGCGTCGCCCAGCCCGTTGCTGCCCAGGTCGAGCTCCCTCAGCGAGGCCTGGGAG
GCCACAATTCCGCACAGGTCTTTGCAGTTGGCTGGCGTGAGACCGCAGTTCTCCAGCCTG
AGCGTCTCCAGCTGGCAGGCAGAGTCGGCCAGACCCTGGCCCAGCACCCGGGCGCCGGCC
TCGCCGATGTCGTTGTTGCTCACCGTGAGCTCCTTCAAGGCCCGCGTGGCCCTGAGCACC
GAGGCCAGGGGCTCGCAGCTGGCGGCCGTCAGGCGGCAGTACTCCAACTGCAGCTTCTCC
AGGTGGCACTGGGGGTCCAGGAGCCCCTCACAGAGCAGCCGCAGGCCGGCGTCCCCCAGT
GGGTTGTCGCTGAGATGCAGCTCCCGCAGCGTGGGCAGGGAGCGCAGCGTGCTGGGCAGG
ACCCCGCAGCCCGCCTCGGTCAGGGAGCAGTTCTGCAGGCTGAGCTTCTGGATCTTGCAG
GTGGGGCTCTGCAGGCCCTGCAGCACCAGGTGCACGCCGGCATCGCCCAGCTCGTTGGTG
CGGAGGCAGAGCTCGGTCAGGGAGGGGTTGGCCCGGAGGGCAGAACTGATGTCCTTGCAG
TGCTCCTCCGTGAGGCCGCAGTCGTCGAGCCTGACCACCTCATACTGCTGGAGCAGCGGC
AGGAGCTCTGTCCACCGGGCGTCGCTCAGCTGCTCGCAGTGGATGTCAAGATTCATGCCG
GGAGGTGGGGTGCTTCCTCCTGCCGCCGCCCTCGCC
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
CCAAAAGGTGTTTTACTAAGTAGAGTGCCGAAAGTTCTCTCACGGGAGTAAGGTGATGTG
AGCATTTCTCGGGTACAGCTGGGGTCCCCGTGGGGGAGGAAGGCCGTCCAGGGAAAAGGA
GCCTCTCAGGAGATGACCCTCAGGCCGGGCTTGCTCCCCTCCAGGGCCTGCAGGCGGTCC
TCCACCTCCTCCGTCCAGTAGGTGTCGTACAGGACCAGCTGCTCCAGGGCGCAGCCCGGC
TGCTCCAGGCTCCCCAGCAGCTGCAGGACGCCCGGGTCGCCCACACAGTTGTTGCTCAGG
TCCAGCTCTCGCAGGCTGCGGTTGGCCAGCAGGAGCGAGGCGAGGCTGCTGCAGCCGCTG
TTGGTCACCTCACAGTCCCCAAGACAGAGCACCCGCAGTGTGGTGCCCGGCTGGCTCAGG
GCCTGGCACAGCTCCTGGATGCCAGAGTCACCCAGCTTGTTGCTGCTCAACTGAAGTTCC
AGGAGATGCTTGTTCTGGGTCAGCATCAAGCTGACGTGCTGGCAGCAGGCCGCCGTGAGG
CTGCAGGACTTCACCCACAGGGACTCCAGCTGGCAGCCGGGCTGCAGCAGGCTCTCGCAC
AGCAGCCGGGCGCCCTCGTCGCCCAGCTTGTTGCCCGCCAGACTGAGCTCCTTCAGGGTC
TCCTTGGCCTGGAGGACACGGCAGAGGTCTCTGCAGCCACTGGCGGTGATGTCACACTCC
CAGAGCCACAGGGTCTTGAGGCGGGAGGCGGGGCTCAAGAGCCCGGGGCACAGCTCGGCT
ATGCCCGCGTCGCCCAGCCCGTTGCTGCCCAGGTCGAGCTCCCTCAGCGAGGCCTGGGAG
GCCACAATTCCGCACAGGTCTTTGCAGTTGGCTGGCGTGAGACCGCAGTTCTCCAGCCTG
AGCGTCTCCAGCTGGCAGGCAGAGTCGGCCAGACCCTGGCCCAGCACCCGGGCGCCGGCC
TCGCCGATGTCGTTGTTGCTCACCGTGAGCTCCTTCAAGGCCCGCGTGGCCCTGAGCACC
GAGGCCAGGGGCTCGCAGCTGGCGGCCGTCAGGCGGCAGTACTCCAACTGCAGCTTCTCC
AGGTGGCACTGGGGGTCCAGGAGCCCCTCACAGAGCAGCCGCAGGCCGGCGTCCCCCAGT
GGGTTGTCGCTGAGATGCAGCTCCCGCAGCGTGGGCAGGGAGCGCAGCGTGCTGGGCAGG
ACCCCGCAGCCCGCCTCGGTCAGGGAGCAGTTCTGCAGGCTGAGCTTCTGGATCTTGCAG
GTGGGGCTCTGCAGGCCCTGCAGCACCAGGTGCACGCCGGCATCGCCCAGCTCGTTGGTG
CGGAGGCAGAGCTCGGTCAGGGAGGGGTTGGCCCGGAGGGCAGAACTGATGTCCTTGCAG
TGCTCCTCCGTGAGGCCGCAGTCGTCGAGCCTGACCACCTCATACTGCTGGAGCAGCGGC
AGGAGCTCTGTCCACCGGGCGTCGCTCAGCTGCTCGCAGTGGATGTCAAGATTCATGCCG
GGAGGTGGGGTGCTTCCTCCTGCCGCCGCCCTCGCC
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
385-562, gnl|bosTau2|chr29 (45683875-45684052) |
|
385-562, gnl|Hg17|chr11 (487971-488148) |
|
385-562, gnl|Mm7|chr7 (137579687-137579864) |
| |
|
1055-1242, gnl|bosTau2|chr29 (45685448-45685636) |
|
1055-1242, gnl|Hg17|chr11 (489811-490002) |
|
1055-1242, gnl|Mm7|chr7 (137581253-137581444) |
| |
|
1394-1518, gnl|bosTau2|chr29 (45691371-45691495) |
|
1394-1518, gnl|canFam2|chr18 (28598818-28598896) |
|
1394-1518, gnl|dasNov1|scaffold_5132 (83888-83972) |
|
1394-1518, gnl|echTel1|scaffold_59367 (626-704) |
|
1394-1518, gnl|galGal2|chr5 (13529191-13529095) |
|
1394-1518, gnl|hg17|chr11 (492059-492152) |
|
1394-1518, gnl|Hg17|chr11 (492051-492183) |
|
1394-1518, gnl|mm7|chr7 (137583944-137584021) |
|
1394-1518, gnl|Mm7|chr7 (137583941-137584053) |
|
1394-1518, gnl|monDom2|scaffold_586 (26109-26017) |
|
1394-1518, gnl|panTro1|chr9 (557145-557238) |
|
1394-1518, gnl|rheMac2|chr14 (308761-308839) |
|
1394-1518, gnl|rn3|chr1 (201514416-201514493) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
385-562, gnl|bosTau2|chr29 (45683875-45684052) |
|
385-562, gnl|Hg17|chr11 (487971-488148) |
|
385-562, gnl|Mm7|chr7 (137579687-137579864) |
| |
|
1055-1242, gnl|bosTau2|chr29 (45685448-45685636) |
|
1055-1242, gnl|Hg17|chr11 (489811-490002) |
|
1055-1242, gnl|Mm7|chr7 (137581253-137581444) |
| |
|
1394-1518, gnl|bosTau2|chr29 (45691371-45691495) |
|
1394-1518, gnl|canFam2|chr18 (28598818-28598896) |
|
1394-1518, gnl|dasNov1|scaffold_5132 (83888-83972) |
|
1394-1518, gnl|echTel1|scaffold_59367 (626-704) |
|
1394-1518, gnl|galGal2|chr5 (13529191-13529095) |
|
1394-1518, gnl|hg17|chr11 (492059-492152) |
|
1394-1518, gnl|Hg17|chr11 (492051-492183) |
|
1394-1518, gnl|mm7|chr7 (137583944-137584021) |
|
1394-1518, gnl|Mm7|chr7 (137583941-137584053) |
|
1394-1518, gnl|monDom2|scaffold_586 (26109-26017) |
|
1394-1518, gnl|panTro1|chr9 (557145-557238) |
|
1394-1518, gnl|rheMac2|chr14 (308761-308839) |
|
1394-1518, gnl|rn3|chr1 (201514416-201514493) |
|
elu (0.385356) |
|
nlu (0.383362) |
|
eep (0.367692) |
|
ton (0.351) |
|
jca (0.34188) |
|
csp (0.322373) |
|
nmm (0.265604) |
|
cov (0.264306) |
|
eru (0.240096) |
|
ece (0.229305) |
|
fcc (0.197785) |
|
nep (0.183925) |
|
eye (0.170503) |
|
fhi (0.169578) |
|
nje (0.16592) |
|
nco (0.161734) |
|
cag (0.151194) |
|
lnt (0.142308) |
|
pla (0.133672) |
|
ute (0.132784) |
|
ese (0.126502) |
|
cly (0.120642) |
|
pgl (0.118483) |
|
cty (0.10408) |
|
jej (0.0989218) |
|
elu (0.385356) |
|
nlu (0.383362) |
|
eep (0.367692) |
|
ton (0.351) |
|
jca (0.34188) |
|
csp (0.322373) |
|
nmm (0.265604) |
|
cov (0.264306) |
|
eru (0.240096) |
|
ece (0.229305) |
|
fcc (0.197785) |
|
nep (0.183925) |
|
eye (0.170503) |
|
fhi (0.169578) |
|
nje (0.16592) |
|
nco (0.161734) |
|
cag (0.151194) |
|
lnt (0.142308) |
|
pla (0.133672) |
|
ute (0.132784) |
|
ese (0.126502) |
|
cly (0.120642) |
|
pgl (0.118483) |
|
cty (0.10408) |
|
jej (0.0989218) |
