Non-Coding RNA Search

Ss1.1-Pig4-TMW8065D16.3

Sequence:


               
               CAACTTCAAATCTGACATCTGGTCCCTTGGCTGTCTACTGTATGAGATGGCCGCTTTGCA
GAGTCCCTTCTACGGTGACAAGATGAACTTATACTCGCTGTGTAAGAAGATAGAGCAGTG
CGACTACCCACCTCTGCCTTCCGATCACTATTCGGAGGAGCTACGGCAATTGGTGAACAT
GTGCATCAACCCAGATCCGGAGAAGCGACCGGACATCACCTACGTGTACGACGTGGCCAA
GAGGATGCACACCTGCACCGCCAGCAGCTGAGCACCGTGGCGCGAGGAGCAGACCCAACA
CATGTTCAAGTATTGTGCAGATCATACCTCCCTGTTTTCGGGTGTTGAGATGAATATTTC
AGAGCTAATGTGCTTTGAATCCTTAACCAGTTTTCGTCTAAGTTTCATTTTGTACCAGTT
TAGGTCACCTTCTCGCAACCCCAGGCAACTCCGGAATAATCAGATTGCGTGTTAGCAGAG
CAAATAGGACACCGTGGTTTTTAACAGCTAAAGATTTTTAAAATTATTTAGAGTTTTGTG
CTAATAAGTTGTGTTCAGATAGACTCTCAGTGCCAAACATCAGGGGCTCAGCTTGGCCCC
ATTAGGACAGACTGGCAGCCTGAGGAAAAGCTGAACACGTGACTTGTGTACTCTATAGTC
ATTTGTGGACATTTGAGATGAACACAGTTGTGAACTTGTGATTATTTTATTTTTAAAAGT
TTGAGGTATGTGTTTTAGGTCTTAGCATTGCAGCTTTCATATAGAAATGTTTAAGGTAAA
TGTAGACAAATTATTTGAGAAACGTTTAAAATTCTTAGCTTAGACATTCAAAATGCAACT
ATTAAATGTGAAACGATTGGGGGTCAAAATGTGAGTCAGACACTGAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAACTTCAAATCTGACATCTGGTCCCTTGGCTGTCTACTGTATGAGATGGCCGCTTTGCA
GAGTCCCTTCTACGGTGACAAGATGAACTTATACTCGCTGTGTAAGAAGATAGAGCAGTG
CGACTACCCACCTCTGCCTTCCGATCACTATTCGGAGGAGCTACGGCAATTGGTGAACAT
GTGCATCAACCCAGATCCGGAGAAGCGACCGGACATCACCTACGTGTACGACGTGGCCAA
GAGGATGCACACCTGCACCGCCAGCAGCTGAGCACCGTGGCGCGAGGAGCAGACCCAACA
CATGTTCAAGTATTGTGCAGATCATACCTCCCTGTTTTCGGGTGTTGAGATGAATATTTC
AGAGCTAATGTGCTTTGAATCCTTAACCAGTTTTCGTCTAAGTTTCATTTTGTACCAGTT
TAGGTCACCTTCTCGCAACCCCAGGCAACTCCGGAATAATCAGATTGCGTGTTAGCAGAG
CAAATAGGACACCGTGGTTTTTAACAGCTAAAGATTTTTAAAATTATTTAGAGTTTTGTG
CTAATAAGTTGTGTTCAGATAGACTCTCAGTGCCAAACATCAGGGGCTCAGCTTGGCCCC
ATTAGGACAGACTGGCAGCCTGAGGAAAAGCTGAACACGTGACTTGTGTACTCTATAGTC
ATTTGTGGACATTTGAGATGAACACAGTTGTGAACTTGTGATTATTTTATTTTTAAAAGT
TTGAGGTATGTGTTTTAGGTCTTAGCATTGCAGCTTTCATATAGAAATGTTTAAGGTAAA
TGTAGACAAATTATTTGAGAAACGTTTAAAATTCTTAGCTTAGACATTCAAAATGCAACT
ATTAAATGTGAAACGATTGGGGGTCAAAATGTGAGTCAGACACTGAAG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|47208804|emb|CAF91555.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|47208804|emb|CAF91555.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               159-888, gnl|bosTau2|chr16 (55953187-55953928)
               

               
               159-888, gnl|Hg17|chr1 (195020197-195020940)
               

               
               159-888, gnl|Mm7|chr1 (138372326-138371606)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               159-888, gnl|bosTau2|chr16 (55953187-55953928)
               

               
               159-888, gnl|Hg17|chr1 (195020197-195020940)
               

               
               159-888, gnl|Mm7|chr1 (138372326-138371606)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               eru (0.360144)
               

               
               ste (0.135208)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eru (0.360144)
               

               
               ste (0.135208)

	159-888, gnl\|bosTau2\|chr16 (55953187-55953928)
	159-888, gnl\|Hg17\|chr1 (195020197-195020940)
	159-888, gnl\|Mm7\|chr1 (138372326-138371606)