Non-Coding RNA Search

Ss1.1-Pig4-TMW8065E19.3

Sequence:


               
               GATGGAGCTGAGGTTTTCCCGCGACCTTTACCCTGGTGGGGGGGTGTTAGGGGCAGTGGG
AAAGCAGCTTCGTGCCGGTATGGCCGTATAGGGTTAGGATCGGATTCCTCAGCGGCTTGG
GAGCAATTCTAAGCGGCTTCCGGGCCCGCCAGCCGCAGCTGGAGGAGAGAGAATCCACGC
TACGAGACGTGTCACCGTGGACAACGCAGTGGCGCGGACCCGATCTGGAGGGGGCGCGGA
ATTGCAAGTGGAGGAGGACAATTCGAGCGTTCTCGACTTCGGGTTTCAACCCGTGTCCAG
TGGGAATGCTAGTGCTCTGTCAGAGGCAAGAAGGCAAAGGCATTTGTTTGAGGCTCTGCG
GCGTGGTAGGTTCACTCTTGAGCCTTTGTTCTTATTTAACTACAGAACAAGTGTGTGAAG
AGGGTATTGTCGCTCCTATTTTACAGATAAAAAAAAGGGTCCAGTATATAGTTAATGGCT
GCCAAAGATCGAAGCCAGTGCCTGCTATTGTTGAAGGTCCATTCGAGTGTTGTGACTGCC
CGCCCTTGTAATTTTGTACATAACATCGAATCTGATTTTTCTAAAAAAATGTTCAAGTGG
GAAGGAGTGTTTTCTTGTAAAATATTGGGTTAATATTATCCTATGGGGATGTTGTGAGGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GATGGAGCTGAGGTTTTCCCGCGACCTTTACCCTGGTGGGGGGGTGTTAGGGGCAGTGGG
AAAGCAGCTTCGTGCCGGTATGGCCGTATAGGGTTAGGATCGGATTCCTCAGCGGCTTGG
GAGCAATTCTAAGCGGCTTCCGGGCCCGCCAGCCGCAGCTGGAGGAGAGAGAATCCACGC
TACGAGACGTGTCACCGTGGACAACGCAGTGGCGCGGACCCGATCTGGAGGGGGCGCGGA
ATTGCAAGTGGAGGAGGACAATTCGAGCGTTCTCGACTTCGGGTTTCAACCCGTGTCCAG
TGGGAATGCTAGTGCTCTGTCAGAGGCAAGAAGGCAAAGGCATTTGTTTGAGGCTCTGCG
GCGTGGTAGGTTCACTCTTGAGCCTTTGTTCTTATTTAACTACAGAACAAGTGTGTGAAG
AGGGTATTGTCGCTCCTATTTTACAGATAAAAAAAAGGGTCCAGTATATAGTTAATGGCT
GCCAAAGATCGAAGCCAGTGCCTGCTATTGTTGAAGGTCCATTCGAGTGTTGTGACTGCC
CGCCCTTGTAATTTTGTACATAACATCGAATCTGATTTTTCTAAAAAAATGTTCAAGTGG
GAAGGAGTGTTTTCTTGTAAAATATTGGGTTAATATTATCCTATGGGGATGTTGTGAGGT

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               3-612, gnl|bosTau2|chr9 (7570332-7570932)
               

               
               3-612, gnl|Hg17|chr11 (75833342-75832735)
               

               
               3-612, gnl|Mm7|chr7 (94688851-94689425)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-612, gnl|bosTau2|chr9 (7570332-7570932)
               

               
               3-612, gnl|Hg17|chr11 (75833342-75832735)
               

               
               3-612, gnl|Mm7|chr7 (94688851-94689425)

Expressed library(ies): 6 entry(ies)

More info

Expressed library(ies): 6 entry(ies)

Help | Less info


               
               vin (0.332557)
               

               
               sag (0.182715)
               

               
               gul (0.177588)
               

               
               cje (0.165235)
               

               
               cst (0.140036)
               

               
               ste (0.135208)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               vin (0.332557)
               

               
               sag (0.182715)
               

               
               gul (0.177588)
               

               
               cje (0.165235)
               

               
               cst (0.140036)
               

               
               ste (0.135208)

	3-612, gnl\|bosTau2\|chr9 (7570332-7570932)
	3-612, gnl\|Hg17\|chr11 (75833342-75832735)
	3-612, gnl\|Mm7\|chr7 (94688851-94689425)

	vin (0.332557)
	sag (0.182715)
	gul (0.177588)
	cje (0.165235)
	cst (0.140036)
	ste (0.135208)