Non-Coding RNA Search

Ss1.1-Pig4-TMW8065F06.3

Sequence:


               
               GATCGCCCTCTGCCATTTCTTCTTCAACATCTCGGGCATCCTGCTGTGGTACCCAGTGCC
CTGCATGCGCCTGCCCATCCGCATGGCCAAGGCGCTGGGGAAACGTACCGCCAAATACCG
GTGGGTCGCCGTCCTCTATCTCCTCCTGTGCTTCCTGCTGCTGCCCTCGCTGGTGTTTGG
CATCTCCATGGCAGGCTGGCAGGCCATGGTAGGTGTGGGCGCACCCTTCGGAGCCCTGCT
GGCCTTTGTGGTACTTGTCAACATGCTGCAGAGCCGCAGCCCAGGGCACCTGCCCAAGTG
GCTACAGACTTGGGACTTCCTGCCTCGGTGGATGCACTCCCTGCAGCCCCTGGACCGCCT
CATCGCCCGTGCCACCTTGTGCTGTGCCAGGCCCGAGCCCCGCTCACCCCCATTGCCTAC
CAGAGTCTTCCTGGAGGAGCTGCCCCCTGCCACACCCTCCCCTCGCCTCGCAATGCCTGC
TCATCTCAATGCCACCCGTCTCTAGGCTCTAGCCCAGACTGGGAAGGGCCTGTGCCTGGT
GCCCTGGGTGGAAGGGCAGCAGGGTGTGTCTGTGAGCTCTGGGCATGTGCCTGTCCTTGT
GCAGGTCCTGGGAGGTTTGGGCTTGTGTGACTGAGAGTCAGTGCGCGTGTACATGTGGGC
ATGTTGGGGTGAGCCTGTGTGTCAGCCTGCCCATATGCACCCCCAGAGGGGCTGCTGTGT
GCTAGCTGCAGGGTACCTGGGTATGATTTTGAGTACTTTGCACATGCATTTGGAGGCCTG
CGCTTGTGTCCTGTGTACGCACAACTCTGACTGGGCTGGGTGGGAGTAAGCATGAGTCTG
AGTATGTGACCAGCACCTGTTTGCTCATGCATAGATATGGGTGCCTGAGTCACTGCCTAA
ATTCTCACCCCCTCCCTGCCAGCTTCCTTCCTCTATTAAGCTATTTTCCTCACCTTTACC
CCAGGTTTTCTGCATCACTGCTACAACCCCCTTCCCCTTCCCTGATTAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GATCGCCCTCTGCCATTTCTTCTTCAACATCTCGGGCATCCTGCTGTGGTACCCAGTGCC
CTGCATGCGCCTGCCCATCCGCATGGCCAAGGCGCTGGGGAAACGTACCGCCAAATACCG
GTGGGTCGCCGTCCTCTATCTCCTCCTGTGCTTCCTGCTGCTGCCCTCGCTGGTGTTTGG
CATCTCCATGGCAGGCTGGCAGGCCATGGTAGGTGTGGGCGCACCCTTCGGAGCCCTGCT
GGCCTTTGTGGTACTTGTCAACATGCTGCAGAGCCGCAGCCCAGGGCACCTGCCCAAGTG
GCTACAGACTTGGGACTTCCTGCCTCGGTGGATGCACTCCCTGCAGCCCCTGGACCGCCT
CATCGCCCGTGCCACCTTGTGCTGTGCCAGGCCCGAGCCCCGCTCACCCCCATTGCCTAC
CAGAGTCTTCCTGGAGGAGCTGCCCCCTGCCACACCCTCCCCTCGCCTCGCAATGCCTGC
TCATCTCAATGCCACCCGTCTCTAGGCTCTAGCCCAGACTGGGAAGGGCCTGTGCCTGGT
GCCCTGGGTGGAAGGGCAGCAGGGTGTGTCTGTGAGCTCTGGGCATGTGCCTGTCCTTGT
GCAGGTCCTGGGAGGTTTGGGCTTGTGTGACTGAGAGTCAGTGCGCGTGTACATGTGGGC
ATGTTGGGGTGAGCCTGTGTGTCAGCCTGCCCATATGCACCCCCAGAGGGGCTGCTGTGT
GCTAGCTGCAGGGTACCTGGGTATGATTTTGAGTACTTTGCACATGCATTTGGAGGCCTG
CGCTTGTGTCCTGTGTACGCACAACTCTGACTGGGCTGGGTGGGAGTAAGCATGAGTCTG
AGTATGTGACCAGCACCTGTTTGCTCATGCATAGATATGGGTGCCTGAGTCACTGCCTAA
ATTCTCACCCCCTCCCTGCCAGCTTCCTTCCTCTATTAAGCTATTTTCCTCACCTTTACC
CCAGGTTTTCTGCATCACTGCTACAACCCCCTTCCCCTTCCCTGATTAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|3286732|emb|CAA11901.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|3286732|emb|CAA11901.1|

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               1-119, - strand, RNAz p=0.551975
               

               
               544-659, + strand, RNAz p=0.662151
               

               
               811-929, + strand, RNAz p=0.767979

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-119, - strand, RNAz p=0.551975
               

               
               544-659, + strand, RNAz p=0.662151
               

               
               811-929, + strand, RNAz p=0.767979

Homologous human UTR: 2 entry(ies)

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Homologous human UTR: 2 entry(ies)

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               3' of NM_003052, +
               

               
               3' of NM_003052, +

Homologous human UTR: 2 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_003052, +
               

               
               3' of NM_003052, +

Aligned organism(s): 8 entry(ies)

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Aligned organism(s): 8 entry(ies)

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               1-659, gnl|bosTau2|chr7 (21640582-21641243)
               

               
               1-659, gnl|Hg17|chr5 (176757389-176758161)
               

               
               1-659, gnl|Mm7|chr13 (54493980-54494591)
               


               
               3-360, gnl|bosTau2|chr11 (85451768-85451411)
               

               
               3-360, gnl|Hg17|chr9 (137406242-137406599)
               

               
               3-360, gnl|Mm7|chr2 (25236825-25236468)
               


               
               708-1020, gnl|bosTau2|chr7 (21641242-21641557)
               

               
               708-1020, gnl|Hg17|chr5 (176758069-176758432)

Aligned organism(s): 8 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-659, gnl|bosTau2|chr7 (21640582-21641243)
               

               
               1-659, gnl|Hg17|chr5 (176757389-176758161)
               

               
               1-659, gnl|Mm7|chr13 (54493980-54494591)
               


               
               3-360, gnl|bosTau2|chr11 (85451768-85451411)
               

               
               3-360, gnl|Hg17|chr9 (137406242-137406599)
               

               
               3-360, gnl|Mm7|chr2 (25236825-25236468)
               


               
               708-1020, gnl|bosTau2|chr7 (21641242-21641557)
               

               
               708-1020, gnl|Hg17|chr5 (176758069-176758432)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cki (0.991408)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cki (0.991408)

	1-119, - strand, RNAz p=0.551975
	544-659, + strand, RNAz p=0.662151
	811-929, + strand, RNAz p=0.767979

	1-659, gnl\|bosTau2\|chr7 (21640582-21641243)
	1-659, gnl\|Hg17\|chr5 (176757389-176758161)
	1-659, gnl\|Mm7\|chr13 (54493980-54494591)

	3-360, gnl\|bosTau2\|chr11 (85451768-85451411)
	3-360, gnl\|Hg17\|chr9 (137406242-137406599)
	3-360, gnl\|Mm7\|chr2 (25236825-25236468)

	708-1020, gnl\|bosTau2\|chr7 (21641242-21641557)
	708-1020, gnl\|Hg17\|chr5 (176758069-176758432)