Non-Coding RNA Search

Ss1.1-Pig4-TMW8065F13.3

Sequence:


               
               AGAAAAATTGAACTCAACTCAGCAAGGAAGGAAAGACTGTATTCCTGAAGAGCAACACAT
CACAGAGTTAAATGTGATAGTGCCAAATATATTAGGTGCTTATTTGGGGTCATGCCAGAC
CTTTCTCAAGTAACTGGAAAATTTTCTTGATGCCATAGTTAGTAGGAAGATAAATGGGGG
TGGGGGTAGGATGCTGTAAAACAAGTGTTTGATTTTATCGTCAAAAATCTAATGTCTGCA
ATATTTTTCTCCTCATAACCTTGGAAACTTTCCCAGTTCATTTTCAGTCCTATTGTTGGC
ACAGTTCTGAAGGGTATGTTCTTGCCGTAATGAGTTGTGTTTTGTTTTGTCTTATGTCGG
GTCTTTTTATGTTGTCTCTTGACCCCTAGTGCTCAGGTTCTTGTGGATATTAATCAGCCA
CATACAATGTTATCCTTAGATGGAAGAAGAGGGTGACTGCTCAGGTTCTAAACAAGAGGG
TGGCCTCTGGAACCTCCTGTGATTAGCCCCAAGTAGTCCAAGCTGAAGTCCTGTTGTTTT
CTGTTTATTGGTAATAGCTGATCGTGTATGGCATCAATTTCCACCTGACTTCCTACTCAG
TCGTTATCAACACAGACTTGAAAAAATATTTTATATGTCCAAATACCTAAATGTGCTAAA
CTGGAGGCAGTTATTTCTAGGTAGTTGAATTTTGGAAAGTAGAAAAAGTTTTAAAGTGAT
GACCAGCCACACAATTGTTTTGTACATACTTTTCTTGTGCACTTTTCTGTATGCAAAGAA
AGCTATAAATTTACTCATTTCAATAAATTGGAATGCAGAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGAAAAATTGAACTCAACTCAGCAAGGAAGGAAAGACTGTATTCCTGAAGAGCAACACAT
CACAGAGTTAAATGTGATAGTGCCAAATATATTAGGTGCTTATTTGGGGTCATGCCAGAC
CTTTCTCAAGTAACTGGAAAATTTTCTTGATGCCATAGTTAGTAGGAAGATAAATGGGGG
TGGGGGTAGGATGCTGTAAAACAAGTGTTTGATTTTATCGTCAAAAATCTAATGTCTGCA
ATATTTTTCTCCTCATAACCTTGGAAACTTTCCCAGTTCATTTTCAGTCCTATTGTTGGC
ACAGTTCTGAAGGGTATGTTCTTGCCGTAATGAGTTGTGTTTTGTTTTGTCTTATGTCGG
GTCTTTTTATGTTGTCTCTTGACCCCTAGTGCTCAGGTTCTTGTGGATATTAATCAGCCA
CATACAATGTTATCCTTAGATGGAAGAAGAGGGTGACTGCTCAGGTTCTAAACAAGAGGG
TGGCCTCTGGAACCTCCTGTGATTAGCCCCAAGTAGTCCAAGCTGAAGTCCTGTTGTTTT
CTGTTTATTGGTAATAGCTGATCGTGTATGGCATCAATTTCCACCTGACTTCCTACTCAG
TCGTTATCAACACAGACTTGAAAAAATATTTTATATGTCCAAATACCTAAATGTGCTAAA
CTGGAGGCAGTTATTTCTAGGTAGTTGAATTTTGGAAAGTAGAAAAAGTTTTAAAGTGAT
GACCAGCCACACAATTGTTTTGTACATACTTTTCTTGTGCACTTTTCTGTATGCAAAGAA
AGCTATAAATTTACTCATTTCAATAAATTGGAATGCAGAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               2-820, gnl|bosTau2|chr20 (21493835-21493019)
               

               
               2-820, gnl|Hg17|chr5 (39408331-39407538)
               

               
               2-820, gnl|Mm7|chr15 (6266960-6267704)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-820, gnl|bosTau2|chr20 (21493835-21493019)
               

               
               2-820, gnl|Hg17|chr5 (39408331-39407538)
               

               
               2-820, gnl|Mm7|chr15 (6266960-6267704)

Expressed library(ies): 13 entry(ies)

More info

Expressed library(ies): 13 entry(ies)

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               sin (0.174948)
               

               
               rec (0.17307)
               

               
               nje (0.16592)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               hlv (0.139256)
               

               
               nca (0.136874)
               

               
               pla (0.133672)
               

               
               kid (0.129735)
               

               
               sug (0.127291)
               

               
               tra (0.123092)
               

               
               ebs (0.118301)
               

               
               spc (0.113366)

Expressed library(ies): 13 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               nje (0.16592)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               hlv (0.139256)
               

               
               nca (0.136874)
               

               
               pla (0.133672)
               

               
               kid (0.129735)
               

               
               sug (0.127291)
               

               
               tra (0.123092)
               

               
               ebs (0.118301)
               

               
               spc (0.113366)

	2-820, gnl\|bosTau2\|chr20 (21493835-21493019)
	2-820, gnl\|Hg17\|chr5 (39408331-39407538)
	2-820, gnl\|Mm7\|chr15 (6266960-6267704)

	sin (0.174948)
	rec (0.17307)
	nje (0.16592)
	lnt (0.142308)
	csk (0.140746)
	hlv (0.139256)
	nca (0.136874)
	pla (0.133672)
	kid (0.129735)
	sug (0.127291)
	tra (0.123092)
	ebs (0.118301)
	spc (0.113366)