Non-Coding RNA Search

Ss1.1-Pig4-TMW8065G05.3

Sequence:


               
               AGTGAGGCCCTTCTCTGCTCTCCCCACTGAGCAAAGTGGACCCCTCCTCTTGAAAGGGCA
AAGGGCAAAGGCCAAGCCGGAGGCCAGCATGGGGGAGGAGGGAAGGGTTAGGGAGGAAGA
AGGGGGCGGGTCAGTGACCGGGACTAGAGAGTGAGAGATAGAGGGACTCTTAGAGAGTGG
GGACTGGGGGAGGTGGTATTTATTTTGTTATTTATTTTAGTCCGGAAGGCAATTCTGGGC
CCTTCTGACCTACTCCTGCACAGGGAGCGGGGAATGGCAGGCAAGTAAAGGGAACCAAGT
TGGCACTCTCCCCGGTGCCTAAAGCGCCGCCCCCCACCCCGCATCCATGCCAGTCTCAAA
GCTGGGGACTGGTCTGGCGTGGGGAGTGCAGCAGAAGAGAGGGGCTCCGGTGAGCTGAGG
GTCAGAGGACTCATTTACAGTATTTACAAGTCGCCAGTATTTGGTAGTGAGCGTGGCCTG
CTCTGAAACAGGCATCTTACTTAGCTGGGGGGTGAGGGTCTAGCACCAGGGATGGGTGGG
GTGATGGGGAAGGAGGGAAATTTTAGCGGGTGGGGGGCGGGCAGGGTATTTATTTAAATT
AAAAAAAAAAAACAGAAGAGATGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGTGAGGCCCTTCTCTGCTCTCCCCACTGAGCAAAGTGGACCCCTCCTCTTGAAAGGGCA
AAGGGCAAAGGCCAAGCCGGAGGCCAGCATGGGGGAGGAGGGAAGGGTTAGGGAGGAAGA
AGGGGGCGGGTCAGTGACCGGGACTAGAGAGTGAGAGATAGAGGGACTCTTAGAGAGTGG
GGACTGGGGGAGGTGGTATTTATTTTGTTATTTATTTTAGTCCGGAAGGCAATTCTGGGC
CCTTCTGACCTACTCCTGCACAGGGAGCGGGGAATGGCAGGCAAGTAAAGGGAACCAAGT
TGGCACTCTCCCCGGTGCCTAAAGCGCCGCCCCCCACCCCGCATCCATGCCAGTCTCAAA
GCTGGGGACTGGTCTGGCGTGGGGAGTGCAGCAGAAGAGAGGGGCTCCGGTGAGCTGAGG
GTCAGAGGACTCATTTACAGTATTTACAAGTCGCCAGTATTTGGTAGTGAGCGTGGCCTG
CTCTGAAACAGGCATCTTACTTAGCTGGGGGGTGAGGGTCTAGCACCAGGGATGGGTGGG
GTGATGGGGAAGGAGGGAAATTTTAGCGGGTGGGGGGCGGGCAGGGTATTTATTTAAATT
AAAAAAAAAAAACAGAAGAGATGT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               148-303, - strand, RNAz p=0.927372

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               148-303, - strand, RNAz p=0.927372

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               153-238, + strand, RNAmicro p=0.982489

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               153-238, + strand, RNAmicro p=0.982489

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               81-612, gnl|bosTau2|chr25 (32474556-32473993)
               

               
               81-612, gnl|Hg17|chr7 (99736476-99737001)
               

               
               81-612, gnl|Mm7|chr5 (136649467-136648955)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               81-612, gnl|bosTau2|chr25 (32474556-32473993)
               

               
               81-612, gnl|Hg17|chr7 (99736476-99737001)
               

               
               81-612, gnl|Mm7|chr5 (136649467-136648955)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               ece (0.229305)
               

               
               fli (0.202881)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)
               

               
               nca (0.136874)
               

               
               med (0.116252)

Expressed library(ies): 6 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.229305)
               

               
               fli (0.202881)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)
               

               
               nca (0.136874)
               

               
               med (0.116252)

	81-612, gnl\|bosTau2\|chr25 (32474556-32473993)
	81-612, gnl\|Hg17\|chr7 (99736476-99737001)
	81-612, gnl\|Mm7\|chr5 (136649467-136648955)

	ece (0.229305)
	fli (0.202881)
	hyp (0.142837)
	pty (0.142714)
	nca (0.136874)
	med (0.116252)