Non-Coding RNA Search

Ss1.1-Pig4-TMW8065G07.3

Sequence:


               
               TGCTTCACAGCTCAGAACATGTACTGAATGGAATGTATTTTTAAGAGAATAAAGTCTATT
TTTTTTTTTTTTTTGTATTTTAAAGATTGGGAGGGCTAGGGAAGTAGTCCTCAAATAAAC
TGTTGTTATTACATTATAGGCGTCCTTGCTAGGGGACATCAGTATCTGTTGGTCCACACC
TACTTGCTCAGGCAGGTGCTCTGGTCTCACCCTGCCCCTTGGAGTCTAGGTGCAGCAGCT
TCTCCTACATTCCTGCTCCAAGCATGGGACCAACGAGGCCAGACCTTGTCGCTGGAAACC
AGGGTGAAGCCATGAGCAGTGACTCAGGGCTCCTTGGGTGCATGTGTATAGTTGAAGCTG
CCTGTCTGCATGTATCCTCTGGCTCTAATGCTGTCTGTTGGCTCTGCAGCACAATATGTA
ACCAATAAAGCTCCCTAGTTTCCAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGCTTCACAGCTCAGAACATGTACTGAATGGAATGTATTTTTAAGAGAATAAAGTCTATT
TTTTTTTTTTTTTTGTATTTTAAAGATTGGGAGGGCTAGGGAAGTAGTCCTCAAATAAAC
TGTTGTTATTACATTATAGGCGTCCTTGCTAGGGGACATCAGTATCTGTTGGTCCACACC
TACTTGCTCAGGCAGGTGCTCTGGTCTCACCCTGCCCCTTGGAGTCTAGGTGCAGCAGCT
TCTCCTACATTCCTGCTCCAAGCATGGGACCAACGAGGCCAGACCTTGTCGCTGGAAACC
AGGGTGAAGCCATGAGCAGTGACTCAGGGCTCCTTGGGTGCATGTGTATAGTTGAAGCTG
CCTGTCTGCATGTATCCTCTGGCTCTAATGCTGTCTGTTGGCTCTGCAGCACAATATGTA
ACCAATAAAGCTCCCTAGTTTCCAAAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               40-154, - strand, RNAz p=0.80719
               

               
               194-307, - strand, RNAz p=0.576481

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-154, - strand, RNAz p=0.80719
               

               
               194-307, - strand, RNAz p=0.576481

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-465, gnl|bosTau2|chr13 (46435893-46435431)
               

               
               1-465, gnl|Hg17|chr1 (23157172-23156764)
               

               
               1-465, gnl|Mm7|chr4 (135927329-135927753)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-465, gnl|bosTau2|chr13 (46435893-46435431)
               

               
               1-465, gnl|Hg17|chr1 (23157172-23156764)
               

               
               1-465, gnl|Mm7|chr4 (135927329-135927753)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               elu (0.385356)
               

               
               hyp (0.285673)
               

               
               ill (0.175593)
               

               
               cly (0.120642)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               elu (0.385356)
               

               
               hyp (0.285673)
               

               
               ill (0.175593)
               

               
               cly (0.120642)

	40-154, - strand, RNAz p=0.80719
	194-307, - strand, RNAz p=0.576481

	1-465, gnl\|bosTau2\|chr13 (46435893-46435431)
	1-465, gnl\|Hg17\|chr1 (23157172-23156764)
	1-465, gnl\|Mm7\|chr4 (135927329-135927753)