Non-Coding RNA Search

Ss1.1-Pig4-TMW8065G11.3

Sequence:


               
               AGACGTGAAGGGGAAAGGATTTGGTTTTTGCAAGCAGAAGCTTGCCAACTTGTAATGTCT
TTTTTTTTTTTTTTTTTGGCAAACAAATCTTGCAAGATGCATTGAAATGATGAGGTAGGA
AGAGGATCGTGTAACTGGTATCAAAGCACTTTGTGCAGTGTAGACTCTATGCAGTTTTCT
TCATGCACCTTTTCTGGTATTCTCAGCCATTGTCCAGTGAGGGGAAGACAACGCTGAGGA
AAACCTTAATGTTTCTTAAGGGTTTCTCCTTGCCTCCCTGTATCCCTCTTCCTCCCCTGG
AACACCTGAACTCTTGGGGATACTGTTGTGATGAAAGCTCTCTGTCTCTGAGCTTGTAGT
TTTGGTTGACTTACAGTGACAAATGGGGTGATGGCTGTGCATTTGGGCTTCTTACCACAA
CTTGACTGGGTAAGGGTTGTACCTTATGGGGTTAAAGAGGAACTTCTTAAAAGACAGTAA
CTTCTTCTGAGAAGTCCGTGTACTTTACTTGAAAAAGACTCTCTTCGAATATGGTTTTGG
CAAAACAATCCTAAATTGTGGCTTCCCAAAGAGGTAAAGGGGAAGAGTTTTCGAAGCTAT
TTGCCATTTAAGCAACTGGGTAGGGTGTATGAAACTGGGAAGAAATGCTGAAATACTCTA
AGTTAGACATTTTTATTTTACAGAAACTCAATTGTTAATATCTTATTAAGCACCACCATC
TTTGAGAGGACTGTTTGATGCCCAGTGAGAATGTGTTGGGGAATATATGAGTGGATAAGC
CTCTCTGTTTCCAGCATCGTTTGGACTCTTCACCTCTTCTTGCTCTAGCAAGCGTGTTCC
AAGGCCAGCTGGTGGTAGTTCTGTGTGACCAGGGAAACTTGTGGCCCGAAAATGTGAATG
TAATGAACAGATATACTGTGGACCCAACTCCACAAAGGCTGAGCTGCCCTTTCCCGACCT
TCAACTGGAAAGAGCTGTGTTGGGAATTTTGTCTACAATATATTCTTTCTGTAGAGCACC
AGGTGTGATGTAGCTTCATGCCAAGAATGATTGAATTATGACTATGTAGAGTCACATATA
TTTTAAAAAAAATTTAGTATTTCGTTTATTCAGTAGAAATGAAATTAATATCTTCATGGA
TGGTATATAAATCCCATACATATAAGCCCATAATTAAAAACACCCCTTTAAAAACTGTTG
TGTTTAAGGAAATTTAGAATATTCCATTTTAAAGAACACCCGACTCTCCTCTGCCCTTAA
TTTTGGTGATAAGAATAAAGGACCCTTCATCTAGCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGACGTGAAGGGGAAAGGATTTGGTTTTTGCAAGCAGAAGCTTGCCAACTTGTAATGTCT
TTTTTTTTTTTTTTTTTGGCAAACAAATCTTGCAAGATGCATTGAAATGATGAGGTAGGA
AGAGGATCGTGTAACTGGTATCAAAGCACTTTGTGCAGTGTAGACTCTATGCAGTTTTCT
TCATGCACCTTTTCTGGTATTCTCAGCCATTGTCCAGTGAGGGGAAGACAACGCTGAGGA
AAACCTTAATGTTTCTTAAGGGTTTCTCCTTGCCTCCCTGTATCCCTCTTCCTCCCCTGG
AACACCTGAACTCTTGGGGATACTGTTGTGATGAAAGCTCTCTGTCTCTGAGCTTGTAGT
TTTGGTTGACTTACAGTGACAAATGGGGTGATGGCTGTGCATTTGGGCTTCTTACCACAA
CTTGACTGGGTAAGGGTTGTACCTTATGGGGTTAAAGAGGAACTTCTTAAAAGACAGTAA
CTTCTTCTGAGAAGTCCGTGTACTTTACTTGAAAAAGACTCTCTTCGAATATGGTTTTGG
CAAAACAATCCTAAATTGTGGCTTCCCAAAGAGGTAAAGGGGAAGAGTTTTCGAAGCTAT
TTGCCATTTAAGCAACTGGGTAGGGTGTATGAAACTGGGAAGAAATGCTGAAATACTCTA
AGTTAGACATTTTTATTTTACAGAAACTCAATTGTTAATATCTTATTAAGCACCACCATC
TTTGAGAGGACTGTTTGATGCCCAGTGAGAATGTGTTGGGGAATATATGAGTGGATAAGC
CTCTCTGTTTCCAGCATCGTTTGGACTCTTCACCTCTTCTTGCTCTAGCAAGCGTGTTCC
AAGGCCAGCTGGTGGTAGTTCTGTGTGACCAGGGAAACTTGTGGCCCGAAAATGTGAATG
TAATGAACAGATATACTGTGGACCCAACTCCACAAAGGCTGAGCTGCCCTTTCCCGACCT
TCAACTGGAAAGAGCTGTGTTGGGAATTTTGTCTACAATATATTCTTTCTGTAGAGCACC
AGGTGTGATGTAGCTTCATGCCAAGAATGATTGAATTATGACTATGTAGAGTCACATATA
TTTTAAAAAAAATTTAGTATTTCGTTTATTCAGTAGAAATGAAATTAATATCTTCATGGA
TGGTATATAAATCCCATACATATAAGCCCATAATTAAAAACACCCCTTTAAAAACTGTTG
TGTTTAAGGAAATTTAGAATATTCCATTTTAAAGAACACCCGACTCTCCTCTGCCCTTAA
TTTTGGTGATAAGAATAAAGGACCCTTCATCTAGCT

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-1085, gnl|bosTau2|chr9 (33554380-33553322)
               

               
               1-1085, gnl|Hg17|chr6 (99834630-99833470)
               

               
               1-1085, gnl|Mm7|chr4 (21998344-21999358)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1085, gnl|bosTau2|chr9 (33554380-33553322)
               

               
               1-1085, gnl|Hg17|chr6 (99834630-99833470)
               

               
               1-1085, gnl|Mm7|chr4 (21998344-21999358)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

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               nca (0.273748)
               

               
               fhi (0.169578)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nca (0.273748)
               

               
               fhi (0.169578)

	1-1085, gnl\|bosTau2\|chr9 (33554380-33553322)
	1-1085, gnl\|Hg17\|chr6 (99834630-99833470)
	1-1085, gnl\|Mm7\|chr4 (21998344-21999358)