Non-Coding RNA Search

Ss1.1-Pig4-TMW8065G17.3

Sequence:


               
               GTCTTTCCCCGTCCCTTCCATGGCACCCATCACAGTCCATCCCTACCACACAGAGCCAGG
GCTCCCACTGCCCACCAGTGTGGCCTGTGAGTTGTGGGGACAGGGAACAGTGAGCAGTGT
CCATCCAGCTTCCACGTTTCCAGCCATCCAGGGTGCCTCACTACCTGCCCTGACCACACA
GCCCAGCCCTCTGGTGAGCGGGGGTTTTCCACCACCTGAGGAGGAGACTCACAGTCAGCC
TGTCAACCCGCACAGCCTACACCACCTGCACGCTGCCTACCGTGTTGGAATGCTGGCACT
GGAGATGCTGGGTCGCCGGGCACACAACGACCACCCCAACAACTTCTCCCGCTCCCCCCC
CTACACTGACGATGTCAAATGGTTGCTGGGGCTGGCAGCAAAGCTGGGAGTGAACTACGT
GCACCAGTTCTGTGTGGGGGCAGCCAAGGGGGTGCTGAGCCCGTTTGTGCTGCAGGAGAT
CGTCATGGAGACGCTGCAGCGGCTGAGCCCCGCTCATGCCCACAACCACCTGCGTGCCCC
GGCCTTCCACCAACTGGTGCAGCGCTGCCAGCAGGCATACATGCAGTACATCCACCACCG
CTTGATCCACCTGACCCCTGCCGACTACGACGACTTTGTGAACGCGATCCGCAGTGCTCG
CAGCGCCTTCTGCCTGACACCCATGGGCATGATGCAGTTCAACGACATCCTGCAGAACCT
CAAGCGCAGCAAACAGACCAAGGAGCTGTGGCAGCGGGTCTCACTCGAGATGACCACCTT
CTCTCCCTGAGTCTGGCCCCTGTAGGGCCCTATACAGGGACACAGGCCTGTGGCTATGGG
GGCCCCTCACAAAGGGGGAATGAGTCTTGGCTGGACAGATCATCCCCCCTGAGCTCCCTG
GTAGCCCAGACCGGCAGCTGCTCTTGGGCTGTAGCTTGGGGCCCAGATGTCTCAGACCCT
AGAAGCCTAGGGTTGGGGGAGGCAGCCCTGTCTGGGAGGGGGCGTTGGGTGGCCTCTGGT
ATTTATTTGGCATTTATAAATATATAAACTCCTTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTCTTTCCCCGTCCCTTCCATGGCACCCATCACAGTCCATCCCTACCACACAGAGCCAGG
GCTCCCACTGCCCACCAGTGTGGCCTGTGAGTTGTGGGGACAGGGAACAGTGAGCAGTGT
CCATCCAGCTTCCACGTTTCCAGCCATCCAGGGTGCCTCACTACCTGCCCTGACCACACA
GCCCAGCCCTCTGGTGAGCGGGGGTTTTCCACCACCTGAGGAGGAGACTCACAGTCAGCC
TGTCAACCCGCACAGCCTACACCACCTGCACGCTGCCTACCGTGTTGGAATGCTGGCACT
GGAGATGCTGGGTCGCCGGGCACACAACGACCACCCCAACAACTTCTCCCGCTCCCCCCC
CTACACTGACGATGTCAAATGGTTGCTGGGGCTGGCAGCAAAGCTGGGAGTGAACTACGT
GCACCAGTTCTGTGTGGGGGCAGCCAAGGGGGTGCTGAGCCCGTTTGTGCTGCAGGAGAT
CGTCATGGAGACGCTGCAGCGGCTGAGCCCCGCTCATGCCCACAACCACCTGCGTGCCCC
GGCCTTCCACCAACTGGTGCAGCGCTGCCAGCAGGCATACATGCAGTACATCCACCACCG
CTTGATCCACCTGACCCCTGCCGACTACGACGACTTTGTGAACGCGATCCGCAGTGCTCG
CAGCGCCTTCTGCCTGACACCCATGGGCATGATGCAGTTCAACGACATCCTGCAGAACCT
CAAGCGCAGCAAACAGACCAAGGAGCTGTGGCAGCGGGTCTCACTCGAGATGACCACCTT
CTCTCCCTGAGTCTGGCCCCTGTAGGGCCCTATACAGGGACACAGGCCTGTGGCTATGGG
GGCCCCTCACAAAGGGGGAATGAGTCTTGGCTGGACAGATCATCCCCCCTGAGCTCCCTG
GTAGCCCAGACCGGCAGCTGCTCTTGGGCTGTAGCTTGGGGCCCAGATGTCTCAGACCCT
AGAAGCCTAGGGTTGGGGGAGGCAGCCCTGTCTGGGAGGGGGCGTTGGGTGGCCTCTGGT
ATTTATTTGGCATTTATAAATATATAAACTCCTTTT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|39645897|gb|AAH63694.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|39645897|gb|AAH63694.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               743-1056, + strand, RNAz p=0.995655

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               743-1056, + strand, RNAz p=0.995655

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               108-288, gnl|bosTau2|chr28 (22939210-22939390)
               

               
               108-288, gnl|Hg17|chr10 (75230057-75230237)
               

               
               108-288, gnl|Mm7|chr14 (18378697-18378877)
               


               
               584-1056, gnl|bosTau2|chr28 (22940202-22940674)
               

               
               584-1056, gnl|Hg17|chr10 (75231077-75231551)
               

               
               584-1056, gnl|Mm7|chr14 (18379693-18380170)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               108-288, gnl|bosTau2|chr28 (22939210-22939390)
               

               
               108-288, gnl|Hg17|chr10 (75230057-75230237)
               

               
               108-288, gnl|Mm7|chr14 (18378697-18378877)
               


               
               584-1056, gnl|bosTau2|chr28 (22940202-22940674)
               

               
               584-1056, gnl|Hg17|chr10 (75231077-75231551)
               

               
               584-1056, gnl|Mm7|chr14 (18379693-18380170)

Expressed library(ies): 9 entry(ies)

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Expressed library(ies): 9 entry(ies)

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               fce (0.543183)
               

               
               ill (0.175593)
               

               
               nco (0.161734)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)
               

               
               ese (0.126502)
               

               
               cly (0.120642)
               

               
               eru (0.120048)
               

               
               clu (0.119646)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.543183)
               

               
               ill (0.175593)
               

               
               nco (0.161734)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)
               

               
               ese (0.126502)
               

               
               cly (0.120642)
               

               
               eru (0.120048)
               

               
               clu (0.119646)

	108-288, gnl\|bosTau2\|chr28 (22939210-22939390)
	108-288, gnl\|Hg17\|chr10 (75230057-75230237)
	108-288, gnl\|Mm7\|chr14 (18378697-18378877)

	584-1056, gnl\|bosTau2\|chr28 (22940202-22940674)
	584-1056, gnl\|Hg17\|chr10 (75231077-75231551)
	584-1056, gnl\|Mm7\|chr14 (18379693-18380170)

	fce (0.543183)
	ill (0.175593)
	nco (0.161734)
	hyp (0.142837)
	pty (0.142714)
	ese (0.126502)
	cly (0.120642)
	eru (0.120048)
	clu (0.119646)