Ss1.1-Pig4-TMW8065H05.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCGGACGCCGCCGAGCGGTCTGTGTAGGTTCGCGGGTCTCTGGCGGGGTTTGTGAGGGGC TTCGCCAGGAGCGGAGAAATGGAGGGGGATGCTTCAGACCCAGAACCTCCAGATGCTGGG GAGGACAGCAAGTCAGAGAATGGGGAGAATGCGCCCATCTACTGCATCTGCCGCAAACCA GACATCAACTGCTTCATGATCGGGTGTGACAACTGCAATGAGTGGTTTCATGGGGACTGC ATCCGGATCACTGAGAAGATGGCCAAGGCCATCCGGGAGTGGTATTGTCGCGAGTGCCGA GAGAAGGATCCCAAGCTGGAGATCCGCTATCGGCACAAGAAGTCACGGGAGCGGGACAGT AACGAGCGAGATGGCAGTGAGCCCCGGGACGAGGGTGGAGGGCGCAAGAGGCCTGTCCCG GAAGCGGACCTGCAGCGCCGGGCAGGGACGGGGACAGGGGTTGGGGCCATGCTTGCCCGG GGCTCCGCCTCGCCCCACAAATCCTCTCCACAGCCCCTGGTGGCCCCACCCAGCCAGCAT CACCAGCAGCAGCAGCAGCAGCAGCAACAACAGCAGATCAAACGGTCAGCCCGCATGTGT GGCGAGTGTGAGGCCTGCCGGCGCACTGAGGACTGTGGCCACTGTGACTTCTGCCGAGAC ATGAAAAAGTTCGGGGGTCCCAACAAGATCCGGCAGAAGTGCCGGCTGCGTCAGTGCCAG CTTCGGGCCCGGGAATCGTACAAGTACTTCCCTTCCTCGCTCTCGCCAGTGACGCCCTCA GAGTCCCTGCCAAGGCCTCGCCGGCCACTGCCCACCCAGCAGCAGCCACAGCCATCGCAG AAGCTGGGGCGCATCCGTGAGGACGAGGGGGCAGTGGCATCTTCGGCAGTCAAGGAGCCA CCAGAGGCTACGGCTACGCCCGAGCCGCTCTCGGACGAGGATCTCCCACTGGACCCTGAC CTGTACCAGGACTTCTGTGCAGGGGCCTTTGATGACCATGGCCTGCCCTGGATGAGTGAC ACGGAGGAGTCCCCATTCCTGGACCCCGCGCTTCGGAAGAGGGCCGTGAAAGTGAAGCAT GTGAAGCGTCGGGAGAAAAAGTCTGACAAGAAGAAAGAAGAAAGATACAAGCGGCATCGG CAGAAGCAGAAGCACAAGGACAAATGGAAACACCCTGAGCGCGCTGATGCCAAGGACCCA GCATCGCTACCGCAGTGCCTGGGGCCTGGCTGTGTGCGCCCTGCCCAGCCCGGCTCCAAG TATTGCTCAGACGACTGTGGCATGAAGCTGGCAGCCAACCGCATCTATGAGATCCTCCCC CAGCGCATCCAGCAGTGGCAGCAGAGCCCCTGCATAGCTGAGGAGCATGGCAAGAAGCTG CTTGAGCGCATTCGCCGGGAGCAGCAGAGCGCCCGCACCCGCCTTCAGGAGATGGAGCGC CGATTCCATGAGCTTGAGGCCATTATCCTGCGTGCCAAGCAGCAGGCTGTGCGTGAAGAT GAGGAGAGCAATGAGGGTGACAGTGATGACACAGACCTGCAGATCTTCTGCGTCTCTTGC GGGCACCCCATCAACCCACGAGTTGCCTTGCGCCACATGGAGCGCTGCTATGCCAAGTAT GAGAGCCAGACGTCCTTTGGGTCCATGTACCCCACACGCATCGAGGGGGCCACCCGCCTC TTCTGTGACGTCTATAATCCTCAAAGCAAGACGTACTGTAAGCGGCTCCAAGTGCTGTGC CCTGAGCACTCACGGGACCCCAAAGTGCCAGCTGATGAGGTATGTGGTTGTCCCCTGGTT CGGGACGTCTTTGAGCTCACAGGTGACTTCTGCCGCCTGCCCAAGCGCCAGTGCAACCGC CACTACTGCTGGGAGAAGCTGCGGCGGGCCGAGGTGGACCTGGAGCGCGTGCGTGTGTGG TATAAGCTAGACGAGCTGTTTGAGCAGGAACGTAATGTACGCACAGCGATGACCAACCGA GCAGGCTTGCTGGCCCTGATGCTACACCAAACCATCCAGCATGACCCGCTCACAACCGAC CTGCGCTCCAGTGCCGACCGCTGAGCCCCAGTGGCCCAGATGTCCTCTTTCCCTGCACTC CTGGCGGGAAGGGCCCTGGATCCTCGTTTGTCTGTTCTGCCATTCATGTTTCTCCGGTGG CCCCTGAGTTTCTCCTGGTGCACATCCACCGTCTGACTGCCTGTTTGCCCTCACCACAGG GCCTCGGAATTTTCTCACGTTCTTGTGTATCCCTCTGTTTCTCCATTCTCTGTGCCTGGG AGGGACTGTGGAGTCTGCTCACCCTGGCCTCCCCCAATTCTGGTTTTGTTAATAAAATTT TGATGAACCAAG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCGGACGCCGCCGAGCGGTCTGTGTAGGTTCGCGGGTCTCTGGCGGGGTTTGTGAGGGGC TTCGCCAGGAGCGGAGAAATGGAGGGGGATGCTTCAGACCCAGAACCTCCAGATGCTGGG GAGGACAGCAAGTCAGAGAATGGGGAGAATGCGCCCATCTACTGCATCTGCCGCAAACCA GACATCAACTGCTTCATGATCGGGTGTGACAACTGCAATGAGTGGTTTCATGGGGACTGC ATCCGGATCACTGAGAAGATGGCCAAGGCCATCCGGGAGTGGTATTGTCGCGAGTGCCGA GAGAAGGATCCCAAGCTGGAGATCCGCTATCGGCACAAGAAGTCACGGGAGCGGGACAGT AACGAGCGAGATGGCAGTGAGCCCCGGGACGAGGGTGGAGGGCGCAAGAGGCCTGTCCCG GAAGCGGACCTGCAGCGCCGGGCAGGGACGGGGACAGGGGTTGGGGCCATGCTTGCCCGG GGCTCCGCCTCGCCCCACAAATCCTCTCCACAGCCCCTGGTGGCCCCACCCAGCCAGCAT CACCAGCAGCAGCAGCAGCAGCAGCAACAACAGCAGATCAAACGGTCAGCCCGCATGTGT GGCGAGTGTGAGGCCTGCCGGCGCACTGAGGACTGTGGCCACTGTGACTTCTGCCGAGAC ATGAAAAAGTTCGGGGGTCCCAACAAGATCCGGCAGAAGTGCCGGCTGCGTCAGTGCCAG CTTCGGGCCCGGGAATCGTACAAGTACTTCCCTTCCTCGCTCTCGCCAGTGACGCCCTCA GAGTCCCTGCCAAGGCCTCGCCGGCCACTGCCCACCCAGCAGCAGCCACAGCCATCGCAG AAGCTGGGGCGCATCCGTGAGGACGAGGGGGCAGTGGCATCTTCGGCAGTCAAGGAGCCA CCAGAGGCTACGGCTACGCCCGAGCCGCTCTCGGACGAGGATCTCCCACTGGACCCTGAC CTGTACCAGGACTTCTGTGCAGGGGCCTTTGATGACCATGGCCTGCCCTGGATGAGTGAC ACGGAGGAGTCCCCATTCCTGGACCCCGCGCTTCGGAAGAGGGCCGTGAAAGTGAAGCAT GTGAAGCGTCGGGAGAAAAAGTCTGACAAGAAGAAAGAAGAAAGATACAAGCGGCATCGG CAGAAGCAGAAGCACAAGGACAAATGGAAACACCCTGAGCGCGCTGATGCCAAGGACCCA GCATCGCTACCGCAGTGCCTGGGGCCTGGCTGTGTGCGCCCTGCCCAGCCCGGCTCCAAG TATTGCTCAGACGACTGTGGCATGAAGCTGGCAGCCAACCGCATCTATGAGATCCTCCCC CAGCGCATCCAGCAGTGGCAGCAGAGCCCCTGCATAGCTGAGGAGCATGGCAAGAAGCTG CTTGAGCGCATTCGCCGGGAGCAGCAGAGCGCCCGCACCCGCCTTCAGGAGATGGAGCGC CGATTCCATGAGCTTGAGGCCATTATCCTGCGTGCCAAGCAGCAGGCTGTGCGTGAAGAT GAGGAGAGCAATGAGGGTGACAGTGATGACACAGACCTGCAGATCTTCTGCGTCTCTTGC GGGCACCCCATCAACCCACGAGTTGCCTTGCGCCACATGGAGCGCTGCTATGCCAAGTAT GAGAGCCAGACGTCCTTTGGGTCCATGTACCCCACACGCATCGAGGGGGCCACCCGCCTC TTCTGTGACGTCTATAATCCTCAAAGCAAGACGTACTGTAAGCGGCTCCAAGTGCTGTGC CCTGAGCACTCACGGGACCCCAAAGTGCCAGCTGATGAGGTATGTGGTTGTCCCCTGGTT CGGGACGTCTTTGAGCTCACAGGTGACTTCTGCCGCCTGCCCAAGCGCCAGTGCAACCGC CACTACTGCTGGGAGAAGCTGCGGCGGGCCGAGGTGGACCTGGAGCGCGTGCGTGTGTGG TATAAGCTAGACGAGCTGTTTGAGCAGGAACGTAATGTACGCACAGCGATGACCAACCGA GCAGGCTTGCTGGCCCTGATGCTACACCAAACCATCCAGCATGACCCGCTCACAACCGAC CTGCGCTCCAGTGCCGACCGCTGAGCCCCAGTGGCCCAGATGTCCTCTTTCCCTGCACTC CTGGCGGGAAGGGCCCTGGATCCTCGTTTGTCTGTTCTGCCATTCATGTTTCTCCGGTGG CCCCTGAGTTTCTCCTGGTGCACATCCACCGTCTGACTGCCTGTTTGCCCTCACCACAGG GCCTCGGAATTTTCTCACGTTCTTGTGTATCCCTCTGTTTCTCCATTCTCTGTGCCTGGG AGGGACTGTGGAGTCTGCTCACCCTGGCCTCCCCCAATTCTGGTTTTGTTAATAAAATTT TGATGAACCAAG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 878-997, + strand, RNAz p=0.726152 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 878-997, + strand, RNAz p=0.726152 |
| Aligned organism(s): 67 entry(ies) | More info |
| Aligned organism(s): 67 entry(ies) | Help | Less info |
| 81-200, gnl|bosTau2|chr24 (37134267-37134386) | |
| 81-200, gnl|canFam2|chr7 (81641310-81641181) | |
| 81-200, gnl|danRer3|chr11 (25793515-25793389) | |
| 81-200, gnl|fr1|chrUn (4184502-4184379) | |
| 81-200, gnl|hg17|chr18 (46067103-46067232) | |
| 81-200, gnl|Hg17|chr18 (46067227-46067108) | |
| 81-200, gnl|mm7|chr18 (74611628-74611499) | |
| 81-200, gnl|Mm7|chr18 (74611502-74611621) | |
| 81-200, gnl|monDom2|scaffold_134 (454648-454777) | |
| 81-200, gnl|panTro1|chr17 (42650303-42650432) | |
| 81-200, gnl|rheMac2|chr18 (43365042-43365171) | |
| 81-200, gnl|rn3|chr18 (71080931-71080802) | |
| 81-200, gnl|tetNig1|chr11 (9293637-9293507) | |
| 81-200, gnl|xenTro1|scaffold_1518 (129109-129234) | |
| 300-537, gnl|bosTau2|chr24 (37134845-37135082) | |
| 300-537, gnl|canFam2|chr7 (81642112-81641853) | |
| 300-537, gnl|hg17|chr18 (46066283-46066538) | |
| 300-537, gnl|Hg17|chr18 (46066627-46066390) | |
| 300-537, gnl|mm7|chr18 (74612449-74612186) | |
| 300-537, gnl|Mm7|chr18 (74612095-74612332) | |
| 300-537, gnl|monDom2|scaffold_134 (453731-454039) | |
| 300-537, gnl|panTro1|chr17 (42649491-42649746) | |
| 300-537, gnl|rheMac2|chr18 (43364218-43364473) | |
| 300-537, gnl|rn3|chr18 (71081769-71081507) | |
| 544-733, gnl|bosTau2|chr24 (37135169-37135358) | |
| 544-733, gnl|canFam2|chr7 (81642305-81642154) | |
| 544-733, gnl|danRer3|chr11 (25795541-25795393) | |
| 544-733, gnl|dasNov1|scaffold_43843 (51026-50910) | |
| 544-733, gnl|echTel1|scaffold_307093 (83578-83724) | |
| 544-733, gnl|fr1|chrUn (4185180-4185034) | |
| 544-733, gnl|galGal2|chrUn (164801360-164801507) | |
| 544-733, gnl|hg17|chr18 (46066108-46066259) | |
| 544-733, gnl|Hg17|chr18 (46066299-46066116) | |
| 544-733, gnl|loxAfr1|scaffold_86354 (31745-31887) | |
| 544-733, gnl|mm7|chr18 (74612624-74612473) | |
| 544-733, gnl|Mm7|chr18 (74612425-74612614) | |
| 544-733, gnl|monDom2|scaffold_134 (453556-453707) | |
| 544-733, gnl|oryCun1|scaffold_79520 (608-750) | |
| 544-733, gnl|panTro1|chr17 (42649316-42649467) | |
| 544-733, gnl|rheMac2|chr18 (43364043-43364194) | |
| 544-733, gnl|rn3|chr18 (71081947-71081796) | |
| 544-733, gnl|tetNig1|chr11 (9294325-9294175) | |
| 544-733, gnl|xenTro1|scaffold_1518 (127803-127951) | |
| 759-1005, gnl|bosTau2|chr24 (37135847-37136093) | |
| 759-1005, gnl|Hg17|chr18 (46065616-46065370) | |
| 759-1005, gnl|Mm7|chr18 (74613067-74613313) | |
| 1296-1506, gnl|bosTau2|chr24 (37137167-37137377) | |
| 1296-1506, gnl|canFam2|chr7 (81644187-81643880) | |
| 1296-1506, gnl|danRer3|chr11 (25801276-25801018) | |
| 1296-1506, gnl|dasNov1|scaffold_200101 (680-390) | |
| 1296-1506, gnl|echTel1|scaffold_307093 (91300-91596) | |
| 1296-1506, gnl|fr1|chrUn (4186162-4185872) | |
| 1296-1506, gnl|hg17|chr18 (46064257-46064538) | |
| 1296-1506, gnl|Hg17|chr18 (46064472-46064262) | |
| 1296-1506, gnl|loxAfr1|scaffold_154774 (356-55) | |
| 1296-1506, gnl|mm7|chr18 (74614388-74614109) | |
| 1296-1506, gnl|Mm7|chr18 (74614171-74614381) | |
| 1296-1506, gnl|monDom2|scaffold_134 (451809-452080) | |
| 1296-1506, gnl|oryCun1|scaffold_203777 (62356-62091) | |
| 1296-1506, gnl|panTro1|chr17 (42645584-42645865) | |
| 1296-1506, gnl|rheMac2|chr18 (43362197-43362474) | |
| 1296-1506, gnl|rn3|chr18 (71083715-71083443) | |
| 1296-1506, gnl|tetNig1|chr11 (9295288-9295050) | |
| 1296-1506, gnl|xenTro1|scaffold_1518 (126639-126916) | |
| 1917-2351, gnl|bosTau2|chr24 (37138420-37138831) | |
| 1917-2351, gnl|Hg17|chr18 (46063108-46062716) | |
| 1917-2351, gnl|Mm7|chr18 (74615394-74615829) |
| Aligned organism(s): 67 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 81-200, gnl|bosTau2|chr24 (37134267-37134386) | |
| 81-200, gnl|canFam2|chr7 (81641310-81641181) | |
| 81-200, gnl|danRer3|chr11 (25793515-25793389) | |
| 81-200, gnl|fr1|chrUn (4184502-4184379) | |
| 81-200, gnl|hg17|chr18 (46067103-46067232) | |
| 81-200, gnl|Hg17|chr18 (46067227-46067108) | |
| 81-200, gnl|mm7|chr18 (74611628-74611499) | |
| 81-200, gnl|Mm7|chr18 (74611502-74611621) | |
| 81-200, gnl|monDom2|scaffold_134 (454648-454777) | |
| 81-200, gnl|panTro1|chr17 (42650303-42650432) | |
| 81-200, gnl|rheMac2|chr18 (43365042-43365171) | |
| 81-200, gnl|rn3|chr18 (71080931-71080802) | |
| 81-200, gnl|tetNig1|chr11 (9293637-9293507) | |
| 81-200, gnl|xenTro1|scaffold_1518 (129109-129234) | |
| 300-537, gnl|bosTau2|chr24 (37134845-37135082) | |
| 300-537, gnl|canFam2|chr7 (81642112-81641853) | |
| 300-537, gnl|hg17|chr18 (46066283-46066538) | |
| 300-537, gnl|Hg17|chr18 (46066627-46066390) | |
| 300-537, gnl|mm7|chr18 (74612449-74612186) | |
| 300-537, gnl|Mm7|chr18 (74612095-74612332) | |
| 300-537, gnl|monDom2|scaffold_134 (453731-454039) | |
| 300-537, gnl|panTro1|chr17 (42649491-42649746) | |
| 300-537, gnl|rheMac2|chr18 (43364218-43364473) | |
| 300-537, gnl|rn3|chr18 (71081769-71081507) | |
| 544-733, gnl|bosTau2|chr24 (37135169-37135358) | |
| 544-733, gnl|canFam2|chr7 (81642305-81642154) | |
| 544-733, gnl|danRer3|chr11 (25795541-25795393) | |
| 544-733, gnl|dasNov1|scaffold_43843 (51026-50910) | |
| 544-733, gnl|echTel1|scaffold_307093 (83578-83724) | |
| 544-733, gnl|fr1|chrUn (4185180-4185034) | |
| 544-733, gnl|galGal2|chrUn (164801360-164801507) | |
| 544-733, gnl|hg17|chr18 (46066108-46066259) | |
| 544-733, gnl|Hg17|chr18 (46066299-46066116) | |
| 544-733, gnl|loxAfr1|scaffold_86354 (31745-31887) | |
| 544-733, gnl|mm7|chr18 (74612624-74612473) | |
| 544-733, gnl|Mm7|chr18 (74612425-74612614) | |
| 544-733, gnl|monDom2|scaffold_134 (453556-453707) | |
| 544-733, gnl|oryCun1|scaffold_79520 (608-750) | |
| 544-733, gnl|panTro1|chr17 (42649316-42649467) | |
| 544-733, gnl|rheMac2|chr18 (43364043-43364194) | |
| 544-733, gnl|rn3|chr18 (71081947-71081796) | |
| 544-733, gnl|tetNig1|chr11 (9294325-9294175) | |
| 544-733, gnl|xenTro1|scaffold_1518 (127803-127951) | |
| 759-1005, gnl|bosTau2|chr24 (37135847-37136093) | |
| 759-1005, gnl|Hg17|chr18 (46065616-46065370) | |
| 759-1005, gnl|Mm7|chr18 (74613067-74613313) | |
| 1296-1506, gnl|bosTau2|chr24 (37137167-37137377) | |
| 1296-1506, gnl|canFam2|chr7 (81644187-81643880) | |
| 1296-1506, gnl|danRer3|chr11 (25801276-25801018) | |
| 1296-1506, gnl|dasNov1|scaffold_200101 (680-390) | |
| 1296-1506, gnl|echTel1|scaffold_307093 (91300-91596) | |
| 1296-1506, gnl|fr1|chrUn (4186162-4185872) | |
| 1296-1506, gnl|hg17|chr18 (46064257-46064538) | |
| 1296-1506, gnl|Hg17|chr18 (46064472-46064262) | |
| 1296-1506, gnl|loxAfr1|scaffold_154774 (356-55) | |
| 1296-1506, gnl|mm7|chr18 (74614388-74614109) | |
| 1296-1506, gnl|Mm7|chr18 (74614171-74614381) | |
| 1296-1506, gnl|monDom2|scaffold_134 (451809-452080) | |
| 1296-1506, gnl|oryCun1|scaffold_203777 (62356-62091) | |
| 1296-1506, gnl|panTro1|chr17 (42645584-42645865) | |
| 1296-1506, gnl|rheMac2|chr18 (43362197-43362474) | |
| 1296-1506, gnl|rn3|chr18 (71083715-71083443) | |
| 1296-1506, gnl|tetNig1|chr11 (9295288-9295050) | |
| 1296-1506, gnl|xenTro1|scaffold_1518 (126639-126916) | |
| 1917-2351, gnl|bosTau2|chr24 (37138420-37138831) | |
| 1917-2351, gnl|Hg17|chr18 (46063108-46062716) | |
| 1917-2351, gnl|Mm7|chr18 (74615394-74615829) |
| Expressed library(ies): 17 entry(ies) | More info |
| Expressed library(ies): 17 entry(ies) | Help | Less info |
| lnt (0.284616) | |
| eje (0.197668) | |
| nlu (0.191681) | |
| ill (0.175593) | |
| cje (0.165235) | |
| csp (0.161186) | |
| cag (0.151194) | |
| hyp (0.142837) | |
| nca (0.136874) | |
| nmm (0.132802) | |
| eep (0.122564) | |
| cly (0.120642) | |
| clu (0.119646) | |
| med (0.116252) | |
| ecc (0.115035) | |
| nbm (0.0993246) | |
| jej (0.0989218) |
| Expressed library(ies): 17 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| lnt (0.284616) | |
| eje (0.197668) | |
| nlu (0.191681) | |
| ill (0.175593) | |
| cje (0.165235) | |
| csp (0.161186) | |
| cag (0.151194) | |
| hyp (0.142837) | |
| nca (0.136874) | |
| nmm (0.132802) | |
| eep (0.122564) | |
| cly (0.120642) | |
| clu (0.119646) | |
| med (0.116252) | |
| ecc (0.115035) | |
| nbm (0.0993246) | |
| jej (0.0989218) |