Non-Coding RNA Search

Ss1.1-Pig4-TMW8065H08.3

Sequence:


               
               ATACCCAGAAGAACACCAAAGAAACCATTGACAAGAGCTGAAGTGGGAGAAAAAACAGAG
GAAAGAAGAGTAGAAAGGGATATTCTTAAGGAAATGTTTCCCTTCGAAGCATCTACACCA
ACGGGAATTAGTGCTAGTTGCCGCAGACCAATCAAAGGAGCGGCAGGCCGACCATTAGAA
CTCAGTGATTTCAGGATGGAAGAATCTTTTTCATCTAAATATATTCCTAAGTATGTTCCT
TTGGCAGATGTCAAGTCAGAAAAGACAAAAAAGGGACGCTCCATTCCCATGTGGATAAAA
ATTTTGCTTTTTGTTGTTGTGGCCATTTTTTTGTTTTTGGTCTACCAAGCTATGGAAACC
AACCAAGGAAATCCATTCTATCAGTTTATTTCTAATAACTCTAAAAATGCCAACTGAACA
ATATCTCTTTGGCACATTCAACTTGGTCTCCTATTTTTAATAACTGTATAAAGAAAACAT
TTGCGTACATTTCTTGACTCAAGAACAAAAAAAATGTGATTTCACCTCAATAAATGTAAT
ATTCCATTGAAAAGCAAACAAGATATATATAAATGGACTTCATTTAATGTTTTGGACTTT
GGACTAGGAGATCACTTCGTGCCATATGAATAATCTTTTTTAGCTCTGGAACTTTTTTGT
AGGCTTTATTTTTTTAACGTGGACATCTTATTTCTTTTTTGAGAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATACCCAGAAGAACACCAAAGAAACCATTGACAAGAGCTGAAGTGGGAGAAAAAACAGAG
GAAAGAAGAGTAGAAAGGGATATTCTTAAGGAAATGTTTCCCTTCGAAGCATCTACACCA
ACGGGAATTAGTGCTAGTTGCCGCAGACCAATCAAAGGAGCGGCAGGCCGACCATTAGAA
CTCAGTGATTTCAGGATGGAAGAATCTTTTTCATCTAAATATATTCCTAAGTATGTTCCT
TTGGCAGATGTCAAGTCAGAAAAGACAAAAAAGGGACGCTCCATTCCCATGTGGATAAAA
ATTTTGCTTTTTGTTGTTGTGGCCATTTTTTTGTTTTTGGTCTACCAAGCTATGGAAACC
AACCAAGGAAATCCATTCTATCAGTTTATTTCTAATAACTCTAAAAATGCCAACTGAACA
ATATCTCTTTGGCACATTCAACTTGGTCTCCTATTTTTAATAACTGTATAAAGAAAACAT
TTGCGTACATTTCTTGACTCAAGAACAAAAAAAATGTGATTTCACCTCAATAAATGTAAT
ATTCCATTGAAAAGCAAACAAGATATATATAAATGGACTTCATTTAATGTTTTGGACTTT
GGACTAGGAGATCACTTCGTGCCATATGAATAATCTTTTTTAGCTCTGGAACTTTTTTGT
AGGCTTTATTTTTTTAACGTGGACATCTTATTTCTTTTTTGAGAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               Q9P1N8_HUMAN

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               Q9P1N8_HUMAN

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               130-708, gnl|bosTau2|chr5 (39076068-39076645)
               

               
               130-708, gnl|Hg17|chr12 (97443817-97444397)
               

               
               130-708, gnl|Mm7|chr10 (90708532-90707972)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               130-708, gnl|bosTau2|chr5 (39076068-39076645)
               

               
               130-708, gnl|Hg17|chr12 (97443817-97444397)
               

               
               130-708, gnl|Mm7|chr10 (90708532-90707972)

Expressed library(ies): 4 entry(ies)

More info

Expressed library(ies): 4 entry(ies)

Help | Less info


               
               eye (0.170503)
               

               
               thg (0.126791)
               

               
               cbl (0.114797)
               

               
               ldo (0.0970026)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eye (0.170503)
               

               
               thg (0.126791)
               

               
               cbl (0.114797)
               

               
               ldo (0.0970026)

	130-708, gnl\|bosTau2\|chr5 (39076068-39076645)
	130-708, gnl\|Hg17\|chr12 (97443817-97444397)
	130-708, gnl\|Mm7\|chr10 (90708532-90707972)