Non-Coding RNA Search

Ss1.1-Pig4-TMW8065H17.3

Sequence:


               
               CCACTGCAAATCAGTCTTTCCGAAAAGTGGTCAAAAATACATCTGGAAAAACTAGTTAAT
TGTGTGACCTAGTGCCTTGTGGAATTGTGTGAGATGCTACCTGATAAACCAGGCGTCTTG
AACCATGCAGAGCAGACAGGCTGTTCTTTTGACACAAATATCACAGGCTTCAGGGTTAAG
ATTGCTGTTATTCTGTCTTTGCTTTGGCACAAAAAGCACACTGAGGGTTGTTGTGTTTTG
TTTTGTTTTTTTCCTTTATTGCGGGTTTGCCTACAGGTAGATTAGATTAATTATTACTAT
GTAATGCAAGTACAATTGAGGGAAAGCTTAGCTAGATATATTTTTTTAAAAAGGTGCTGC
CTTTTTGAACTTCTAAGAAAACGCCTTTCAATCATGATAGAACCCAGTTTTCCTCATACG
AATGAGAGGAAGAGACTTTCACTTTCAAGTGGAATGGCCGTCACTATCAAGATCAGCTCA
TGGAAGGAGTAAAGAAAATATCTCAAAATGAGACAACTGAAATTTTTTTTTAATAACTTC
AGTTTTTGTGCTCTTGCAAGACTATACAAAACTATTTTAAGAAAGCAGTGAGGGCACTTG
ACTTCAGTGCCCTTACTGTAGAATTTAAAAGCCTTACTGTTGATTGCCCATGGTGGACTT
AATGGAAAATAAATATTTACATTATGCTTTACAAAATACTGTATGTGTTTCAGCAAGTTT
GTAGATTGGGGAATGGGAGAAGGCAAAAAAAAAATTACATTTAATCTATGCATTTTTGCC
AAGCCATATCGAGTTATTTTACTACTAGAGACATTAGGAACTAACTGTACAAAAGAACCA
AGTTTAAAAGCATTTTGTGGGGTACATCATTTCTGTAATTGTATAATGTGTTTCTTTGTG
GTTTTTAAGTGATAAAGACATTAAGTTAACAAACATATAAGAAATGTATGCACTGTTTGA
AATGTAAATTATTCTTAGAACACTTTTGATGGGAGTTGCATTGCCCTTTTAGTGCCTTAA
TTTGAGAGAATTATTTTACTGCCATGACTAAATATAGAAATTTGAAAAAGCATATTTTCA
AAAAATTGTCAGTGGGTTTTTCATTGATAATTGGTTTAATTTAAAATATTTAGAAGCTTG
TTGGACTTTCATAATTTGAATACAATCTTTGTATCAAACTACCTGGTAAAATAATGAATG
ACTTTATAGAACTCTGCAAAATATGTTGAAGGTTGCACCTATATAAAAGAAAATTATGGC
AATACATCTGTGATGTTTTCCAGTTAACATAGGAATTACCAGATAAATACTGTTAAACTC
TTGTCCAATACCAAGAGTTGATTCATGTGTAGGCAGTATGATTTATTGTTTATTTTTTTA
ACCAAATACCTCCTCAGTAATTTATAATGGCTTTGCAGTAATGTGTATCAGATAAGAAGC
ACTGGAAAACTGATTCGTCTCTAGGATGATATGCATGTTTCAAGTGGTATTAAAAGCCGC
ACTGATGGATATGTAATAATAAACATATCTGTTATTAATATGCTAATGACTCTGTGCTCA
TTTAATGAGAAATAAAAGTAATTTATGGATGGATAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCACTGCAAATCAGTCTTTCCGAAAAGTGGTCAAAAATACATCTGGAAAAACTAGTTAAT
TGTGTGACCTAGTGCCTTGTGGAATTGTGTGAGATGCTACCTGATAAACCAGGCGTCTTG
AACCATGCAGAGCAGACAGGCTGTTCTTTTGACACAAATATCACAGGCTTCAGGGTTAAG
ATTGCTGTTATTCTGTCTTTGCTTTGGCACAAAAAGCACACTGAGGGTTGTTGTGTTTTG
TTTTGTTTTTTTCCTTTATTGCGGGTTTGCCTACAGGTAGATTAGATTAATTATTACTAT
GTAATGCAAGTACAATTGAGGGAAAGCTTAGCTAGATATATTTTTTTAAAAAGGTGCTGC
CTTTTTGAACTTCTAAGAAAACGCCTTTCAATCATGATAGAACCCAGTTTTCCTCATACG
AATGAGAGGAAGAGACTTTCACTTTCAAGTGGAATGGCCGTCACTATCAAGATCAGCTCA
TGGAAGGAGTAAAGAAAATATCTCAAAATGAGACAACTGAAATTTTTTTTTAATAACTTC
AGTTTTTGTGCTCTTGCAAGACTATACAAAACTATTTTAAGAAAGCAGTGAGGGCACTTG
ACTTCAGTGCCCTTACTGTAGAATTTAAAAGCCTTACTGTTGATTGCCCATGGTGGACTT
AATGGAAAATAAATATTTACATTATGCTTTACAAAATACTGTATGTGTTTCAGCAAGTTT
GTAGATTGGGGAATGGGAGAAGGCAAAAAAAAAATTACATTTAATCTATGCATTTTTGCC
AAGCCATATCGAGTTATTTTACTACTAGAGACATTAGGAACTAACTGTACAAAAGAACCA
AGTTTAAAAGCATTTTGTGGGGTACATCATTTCTGTAATTGTATAATGTGTTTCTTTGTG
GTTTTTAAGTGATAAAGACATTAAGTTAACAAACATATAAGAAATGTATGCACTGTTTGA
AATGTAAATTATTCTTAGAACACTTTTGATGGGAGTTGCATTGCCCTTTTAGTGCCTTAA
TTTGAGAGAATTATTTTACTGCCATGACTAAATATAGAAATTTGAAAAAGCATATTTTCA
AAAAATTGTCAGTGGGTTTTTCATTGATAATTGGTTTAATTTAAAATATTTAGAAGCTTG
TTGGACTTTCATAATTTGAATACAATCTTTGTATCAAACTACCTGGTAAAATAATGAATG
ACTTTATAGAACTCTGCAAAATATGTTGAAGGTTGCACCTATATAAAAGAAAATTATGGC
AATACATCTGTGATGTTTTCCAGTTAACATAGGAATTACCAGATAAATACTGTTAAACTC
TTGTCCAATACCAAGAGTTGATTCATGTGTAGGCAGTATGATTTATTGTTTATTTTTTTA
ACCAAATACCTCCTCAGTAATTTATAATGGCTTTGCAGTAATGTGTATCAGATAAGAAGC
ACTGGAAAACTGATTCGTCTCTAGGATGATATGCATGTTTCAAGTGGTATTAAAAGCCGC
ACTGATGGATATGTAATAATAAACATATCTGTTATTAATATGCTAATGACTCTGTGCTCA
TTTAATGAGAAATAAAAGTAATTTATGGATGGATAC

Predicted RNA structure(s): 4 entry(ies)

More info

Predicted RNA structure(s): 4 entry(ies)

Help | Less info


               
               322-441, - strand, RNAz p=0.755742
               

               
               482-746, - strand, RNAz p=0.934382
               

               
               861-980, + strand, RNAz p=0.756121
               

               
               1252-1596, - strand, RNAz p=0.974307

Predicted RNA structure(s): 4 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               322-441, - strand, RNAz p=0.755742
               

               
               482-746, - strand, RNAz p=0.934382
               

               
               861-980, + strand, RNAz p=0.756121
               

               
               1252-1596, - strand, RNAz p=0.974307

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               54-1596, gnl|bosTau2|chr24 (25516576-25518120)
               

               
               54-1596, gnl|Hg17|chr18 (16785348-16783832)
               

               
               54-1596, gnl|Mm7|chr18 (10272603-10271084)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               54-1596, gnl|bosTau2|chr24 (25516576-25518120)
               

               
               54-1596, gnl|Hg17|chr18 (16785348-16783832)
               

               
               54-1596, gnl|Mm7|chr18 (10272603-10271084)

Expressed library(ies): 15 entry(ies)

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Expressed library(ies): 15 entry(ies)

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               lin (0.436808)
               

               
               ret (0.3862)
               

               
               tra (0.369276)
               

               
               vin (0.332557)
               

               
               bfe (0.299715)
               

               
               lnt (0.284616)
               

               
               ton (0.1755)
               

               
               lun (0.150489)
               

               
               liv (0.146284)
               

               
               hlv (0.139256)
               

               
               nmm (0.132802)
               

               
               kid (0.129735)
               

               
               bla (0.124347)
               

               
               ebs (0.118301)
               

               
               ldo (0.0970026)

Expressed library(ies): 15 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lin (0.436808)
               

               
               ret (0.3862)
               

               
               tra (0.369276)
               

               
               vin (0.332557)
               

               
               bfe (0.299715)
               

               
               lnt (0.284616)
               

               
               ton (0.1755)
               

               
               lun (0.150489)
               

               
               liv (0.146284)
               

               
               hlv (0.139256)
               

               
               nmm (0.132802)
               

               
               kid (0.129735)
               

               
               bla (0.124347)
               

               
               ebs (0.118301)
               

               
               ldo (0.0970026)

	322-441, - strand, RNAz p=0.755742
	482-746, - strand, RNAz p=0.934382
	861-980, + strand, RNAz p=0.756121
	1252-1596, - strand, RNAz p=0.974307

	54-1596, gnl\|bosTau2\|chr24 (25516576-25518120)
	54-1596, gnl\|Hg17\|chr18 (16785348-16783832)
	54-1596, gnl\|Mm7\|chr18 (10272603-10271084)

	lin (0.436808)
	ret (0.3862)
	tra (0.369276)
	vin (0.332557)
	bfe (0.299715)
	lnt (0.284616)
	ton (0.1755)
	lun (0.150489)
	liv (0.146284)
	hlv (0.139256)
	nmm (0.132802)
	kid (0.129735)
	bla (0.124347)
	ebs (0.118301)
	ldo (0.0970026)