Ss1.1-Pig4-TMW8065K06.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGGTTCCAATGGCAACAACAGAAGGTTGCCTCGTGGCCAGCACCAATAGAGGCTGCAGAG CAATTGGTCTTGGTGGAGGCGCCAGCAGCCGAATCCTCGCAGATGGCATGACTCGTGGCC CAGTGGTACGTTTTCCACGTGCTTGTGACTCTGCAGAAGTAAAGGCCTGGCTCGAGACAC CTGAAGGGTTTGCAGTGATAAAGGAGGCATTCGACAGCACCAGCAGATTTGCTCGTCTAC AGAAACTTCAAATGAGTGTGGCCGGACGCAACCTTTATATCCGTTTCCAGTCCAGGTCAG GTGATGCCATGGGGATGAACATGATTTCGAAGGGTACAGAGAAAGCCCTTTCGAAACTTC ATGAGTATTTCCCTGAAATGCAGATTCTGGCAGTCAGTGGTAACTATTGTACTGACAAGA AACCTGCTGCTGTAAACTGGATAGAGGGAAGAGGAAAGTCTGTTGTGTGTGAAGCTGTCA TTCCAGCCAAGGTTGTCAGAGAAGTATTAAAGACTACTACAGAAGCGATGGTTGAGGTCA ACATTAACAAAAATCTGGTGGGCTCGGCCATGGCCGGGAGCATCGGCGGCTACAACGCCC ATGCAGCCAACATCGTGACTGCCATCTACATTGCCTGTGGTCAGGATGCGGCACAGAACG TTGGCAGCTCCAACTGTATTACTTTAATGGAAGCGAGTGGTCCCACAAATGAAGACTTGT ACATCAGCTGCACCATGCCATCCATAGAGATCGGGACCGTGGGCGGGGGGACCAGCCTGC TCCCTCAGCAGGCCTGTTTGCAGATGCTAGGGGTTCAAGGAGCGTGCAAAGACAATCCTG GGGAAAACGCCCGGCAGCTCGCCCGAATTGTGTGCGGTACAGTGATGGCTGGGGAGTTGT CCCTGATGGCAGCTTTGGCAGCTGGACATCTCGTCAGAAGTCACATGATTCACAACAGGT CAAAGATAAATTTACAAGACCTCCAAGGAACTTGCACTAAGAAGGCAGCTTGAATAGGCT GACAGTTCTGAACAGAAACACGGGCTTTGGGTTCTAAAGGACTGACATAAAAATCTGTGA ATTAAAAAAGCTCAATGCAGTGTCTTGTTGAGGATGAATAGTCGTGATCAGTGAGACGAC TGCTTGGTTTCTGACTCTTTCGGAAAGTCCGAGGTTCTTCTTTCCACGCAGATTCCTCAG ATCTGAACACAGTTTACATGCCTTACATGCTGTGCTCTTTGGAAAATCCTCAACATGGAT ATTATGCCTTTAGAGCATCACAGTGGTAATCGACCGCACACTTCTGCAAGAGAATACAGC TGGAAAAGAGTGTTTTCTTGTGATAAAATTCATGGAGTTCATGGTGATCAGTGTGAGATT GAACCCTCCTCCTGTCCACACCCCTCAACCCCCAACCCTGGGTTGAAATGGATTTTTAAA TTATATTGTAGCTGATAAAACTCCTGATTTCATAGTTAATTTATTAAGTCTGGGTTGTAG AACTTTAAGAAATAAGAGCTAAGTTTATTTTTTTGTAAACTAATACTTCATTTGGTGCTG GTCTGTTTTGATTTTGGGGGGGATAGCCAATGTGATTCTTCAGAAGGGGGCCTGCTTTCT TCAAGAGAAGAATTGCCCTTATCCCTGGATTACAGAATAATGTGCTACTAAGCAGTGCTA AATAGTTCTCTTTCAAGAAAACAAATCACTGCATTTATCTCTGCAGGTTATTTGTTCAGA GAGGACTCTGGTCTAAATATAAATGTTTGTCTAGATTGGCCATATCTTTCGGCATATAAG GCTTTAAGAAGCAGAGTTTTGTGCTCTTTATTAAAGATCCAAGAGCTCTTAATATTGCCT AGATGAAGGTGGCTCTGTTTATCAATGATATACAAGTCTATGACCTCTCTTGGAACTCAG CAGGTGGAAAACACAGGTTTGGAAGAAAATTACCACTTCGCAAAGCCAACTTTCTTTTTT TTTTTTTTTGGCCGCACCCTCGGCATGTGCACGTTCCCGGACCAGGGATTGAACCAGTGC CGTAGTTGTAGCCTACGCCACAGCTGCGGTAATGCTGGCTCCTTAACCCACTGTGCCACA AGGGAACTCCCAGTTTCTTAAAAGATACTTAATTTAGCTGAAAAATCTAGATAGTTTTTG GTAAAGGCCTGTATGAAATCTGTATATGTTGTAATA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGGTTCCAATGGCAACAACAGAAGGTTGCCTCGTGGCCAGCACCAATAGAGGCTGCAGAG CAATTGGTCTTGGTGGAGGCGCCAGCAGCCGAATCCTCGCAGATGGCATGACTCGTGGCC CAGTGGTACGTTTTCCACGTGCTTGTGACTCTGCAGAAGTAAAGGCCTGGCTCGAGACAC CTGAAGGGTTTGCAGTGATAAAGGAGGCATTCGACAGCACCAGCAGATTTGCTCGTCTAC AGAAACTTCAAATGAGTGTGGCCGGACGCAACCTTTATATCCGTTTCCAGTCCAGGTCAG GTGATGCCATGGGGATGAACATGATTTCGAAGGGTACAGAGAAAGCCCTTTCGAAACTTC ATGAGTATTTCCCTGAAATGCAGATTCTGGCAGTCAGTGGTAACTATTGTACTGACAAGA AACCTGCTGCTGTAAACTGGATAGAGGGAAGAGGAAAGTCTGTTGTGTGTGAAGCTGTCA TTCCAGCCAAGGTTGTCAGAGAAGTATTAAAGACTACTACAGAAGCGATGGTTGAGGTCA ACATTAACAAAAATCTGGTGGGCTCGGCCATGGCCGGGAGCATCGGCGGCTACAACGCCC ATGCAGCCAACATCGTGACTGCCATCTACATTGCCTGTGGTCAGGATGCGGCACAGAACG TTGGCAGCTCCAACTGTATTACTTTAATGGAAGCGAGTGGTCCCACAAATGAAGACTTGT ACATCAGCTGCACCATGCCATCCATAGAGATCGGGACCGTGGGCGGGGGGACCAGCCTGC TCCCTCAGCAGGCCTGTTTGCAGATGCTAGGGGTTCAAGGAGCGTGCAAAGACAATCCTG GGGAAAACGCCCGGCAGCTCGCCCGAATTGTGTGCGGTACAGTGATGGCTGGGGAGTTGT CCCTGATGGCAGCTTTGGCAGCTGGACATCTCGTCAGAAGTCACATGATTCACAACAGGT CAAAGATAAATTTACAAGACCTCCAAGGAACTTGCACTAAGAAGGCAGCTTGAATAGGCT GACAGTTCTGAACAGAAACACGGGCTTTGGGTTCTAAAGGACTGACATAAAAATCTGTGA ATTAAAAAAGCTCAATGCAGTGTCTTGTTGAGGATGAATAGTCGTGATCAGTGAGACGAC TGCTTGGTTTCTGACTCTTTCGGAAAGTCCGAGGTTCTTCTTTCCACGCAGATTCCTCAG ATCTGAACACAGTTTACATGCCTTACATGCTGTGCTCTTTGGAAAATCCTCAACATGGAT ATTATGCCTTTAGAGCATCACAGTGGTAATCGACCGCACACTTCTGCAAGAGAATACAGC TGGAAAAGAGTGTTTTCTTGTGATAAAATTCATGGAGTTCATGGTGATCAGTGTGAGATT GAACCCTCCTCCTGTCCACACCCCTCAACCCCCAACCCTGGGTTGAAATGGATTTTTAAA TTATATTGTAGCTGATAAAACTCCTGATTTCATAGTTAATTTATTAAGTCTGGGTTGTAG AACTTTAAGAAATAAGAGCTAAGTTTATTTTTTTGTAAACTAATACTTCATTTGGTGCTG GTCTGTTTTGATTTTGGGGGGGATAGCCAATGTGATTCTTCAGAAGGGGGCCTGCTTTCT TCAAGAGAAGAATTGCCCTTATCCCTGGATTACAGAATAATGTGCTACTAAGCAGTGCTA AATAGTTCTCTTTCAAGAAAACAAATCACTGCATTTATCTCTGCAGGTTATTTGTTCAGA GAGGACTCTGGTCTAAATATAAATGTTTGTCTAGATTGGCCATATCTTTCGGCATATAAG GCTTTAAGAAGCAGAGTTTTGTGCTCTTTATTAAAGATCCAAGAGCTCTTAATATTGCCT AGATGAAGGTGGCTCTGTTTATCAATGATATACAAGTCTATGACCTCTCTTGGAACTCAG CAGGTGGAAAACACAGGTTTGGAAGAAAATTACCACTTCGCAAAGCCAACTTTCTTTTTT TTTTTTTTTGGCCGCACCCTCGGCATGTGCACGTTCCCGGACCAGGGATTGAACCAGTGC CGTAGTTGTAGCCTACGCCACAGCTGCGGTAATGCTGGCTCCTTAACCCACTGTGCCACA AGGGAACTCCCAGTTTCTTAAAAGATACTTAATTTAGCTGAAAAATCTAGATAGTTTTTG GTAAAGGCCTGTATGAAATCTGTATATGTTGTAATA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 689-806, - strand, RNAz p=0.652099 | |
| 1584-1703, - strand, RNAz p=0.517229 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 689-806, - strand, RNAz p=0.652099 | |
| 1584-1703, - strand, RNAz p=0.517229 |
| Aligned organism(s): 51 entry(ies) | More info |
| Aligned organism(s): 51 entry(ies) | Help | Less info |
| 69-231, gnl|bosTau2|chr10 (1899909-1899747) | |
| 69-231, gnl|canFam2|chr3 (33862774-33862603) | |
| 69-231, gnl|danRer3|chr5 (57335226-57335057) | |
| 69-231, gnl|dasNov1|scaffold_23688 (32339-32514) | |
| 69-231, gnl|echTel1|scaffold_287393 (31654-31807) | |
| 69-231, gnl|fr1|chrUn (212671152-212670982) | |
| 69-231, gnl|galGal2|chrZ (10107300-10107468) | |
| 69-231, gnl|hg17|chr5 (74686942-74687113) | |
| 69-231, gnl|Hg17|chr5 (74686946-74687108) | |
| 69-231, gnl|loxAfr1|scaffold_10127 (15721-15892) | |
| 69-231, gnl|mm7|chr13 (93725072-93724901) | |
| 69-231, gnl|Mm7|chr13 (93725066-93724898) | |
| 69-231, gnl|monDom2|scaffold_60 (9693182-9693353) | |
| 69-231, gnl|oryCun1|scaffold_165063 (13304-13476) | |
| 69-231, gnl|panTro1|chr4 (40737240-40737069) | |
| 69-231, gnl|rheMac2|chr6 (71555662-71555833) | |
| 69-231, gnl|rn3|chr2 (27054218-27054051) | |
| 69-231, gnl|tetNig1|chrUn_random (1518435-1518605) | |
| 69-231, gnl|xenTro1|scaffold_120 (1986217-1986385) | |
| 331-505, gnl|bosTau2|chr10 (1897032-1896858) | |
| 331-505, gnl|canFam2|chr3 (33858825-33858637) | |
| 331-505, gnl|danRer3|chr5 (57333068-57332880) | |
| 331-505, gnl|dasNov1|scaffold_23688 (34896-35073) | |
| 331-505, gnl|echTel1|scaffold_287393 (31919-32093) | |
| 331-505, gnl|fr1|chrUn (212670727-212670546) | |
| 331-505, gnl|galGal2|chrZ (10109110-10109298) | |
| 331-505, gnl|hg17|chr5 (74690232-74690420) | |
| 331-505, gnl|Hg17|chr5 (74690236-74690410) | |
| 331-505, gnl|loxAfr1|scaffold_10127 (18478-18666) | |
| 331-505, gnl|mm7|chr13 (93722199-93722009) | |
| 331-505, gnl|Mm7|chr13 (93722189-93722015) | |
| 331-505, gnl|monDom2|scaffold_60 (9696742-9696928) | |
| 331-505, gnl|oryCun1|scaffold_194597 (60571-60385) | |
| 331-505, gnl|panTro1|chr4 (40733942-40733754) | |
| 331-505, gnl|rheMac2|chr6 (71558934-71559122) | |
| 331-505, gnl|rn3|chr2 (27051745-27051558) | |
| 331-505, gnl|tetNig1|chrUn_random (1518849-1519026) | |
| 640-806, gnl|bosTau2|chr10 (1896395-1896229) | |
| 640-806, gnl|canFam2|chr3 (33858128-33858007) | |
| 640-806, gnl|dasNov1|scaffold_23688 (35621-35740) | |
| 640-806, gnl|echTel1|scaffold_294806 (4754-4635) | |
| 640-806, gnl|hg17|chr19 (60152058-60152177) | |
| 640-806, gnl|Hg17|chr5 (74690974-74691140) | |
| 640-806, gnl|mm7|chr13 (93721376-93721255) | |
| 640-806, gnl|Mm7|chr13 (93721378-93721212) | |
| 640-806, gnl|panTro1|chr20 (57575029-57575148) | |
| 640-806, gnl|rheMac2|chr6 (71559680-71559799) | |
| 640-806, gnl|rn3|chr2 (27050937-27050816) | |
| 957-1981, gnl|bosTau2|chr10 (1895464-1894452) | |
| 957-1981, gnl|Hg17|chr5 (74691867-74692867) | |
| 957-1981, gnl|Mm7|chr13 (93719994-93719151) |
| Aligned organism(s): 51 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 69-231, gnl|bosTau2|chr10 (1899909-1899747) | |
| 69-231, gnl|canFam2|chr3 (33862774-33862603) | |
| 69-231, gnl|danRer3|chr5 (57335226-57335057) | |
| 69-231, gnl|dasNov1|scaffold_23688 (32339-32514) | |
| 69-231, gnl|echTel1|scaffold_287393 (31654-31807) | |
| 69-231, gnl|fr1|chrUn (212671152-212670982) | |
| 69-231, gnl|galGal2|chrZ (10107300-10107468) | |
| 69-231, gnl|hg17|chr5 (74686942-74687113) | |
| 69-231, gnl|Hg17|chr5 (74686946-74687108) | |
| 69-231, gnl|loxAfr1|scaffold_10127 (15721-15892) | |
| 69-231, gnl|mm7|chr13 (93725072-93724901) | |
| 69-231, gnl|Mm7|chr13 (93725066-93724898) | |
| 69-231, gnl|monDom2|scaffold_60 (9693182-9693353) | |
| 69-231, gnl|oryCun1|scaffold_165063 (13304-13476) | |
| 69-231, gnl|panTro1|chr4 (40737240-40737069) | |
| 69-231, gnl|rheMac2|chr6 (71555662-71555833) | |
| 69-231, gnl|rn3|chr2 (27054218-27054051) | |
| 69-231, gnl|tetNig1|chrUn_random (1518435-1518605) | |
| 69-231, gnl|xenTro1|scaffold_120 (1986217-1986385) | |
| 331-505, gnl|bosTau2|chr10 (1897032-1896858) | |
| 331-505, gnl|canFam2|chr3 (33858825-33858637) | |
| 331-505, gnl|danRer3|chr5 (57333068-57332880) | |
| 331-505, gnl|dasNov1|scaffold_23688 (34896-35073) | |
| 331-505, gnl|echTel1|scaffold_287393 (31919-32093) | |
| 331-505, gnl|fr1|chrUn (212670727-212670546) | |
| 331-505, gnl|galGal2|chrZ (10109110-10109298) | |
| 331-505, gnl|hg17|chr5 (74690232-74690420) | |
| 331-505, gnl|Hg17|chr5 (74690236-74690410) | |
| 331-505, gnl|loxAfr1|scaffold_10127 (18478-18666) | |
| 331-505, gnl|mm7|chr13 (93722199-93722009) | |
| 331-505, gnl|Mm7|chr13 (93722189-93722015) | |
| 331-505, gnl|monDom2|scaffold_60 (9696742-9696928) | |
| 331-505, gnl|oryCun1|scaffold_194597 (60571-60385) | |
| 331-505, gnl|panTro1|chr4 (40733942-40733754) | |
| 331-505, gnl|rheMac2|chr6 (71558934-71559122) | |
| 331-505, gnl|rn3|chr2 (27051745-27051558) | |
| 331-505, gnl|tetNig1|chrUn_random (1518849-1519026) | |
| 640-806, gnl|bosTau2|chr10 (1896395-1896229) | |
| 640-806, gnl|canFam2|chr3 (33858128-33858007) | |
| 640-806, gnl|dasNov1|scaffold_23688 (35621-35740) | |
| 640-806, gnl|echTel1|scaffold_294806 (4754-4635) | |
| 640-806, gnl|hg17|chr19 (60152058-60152177) | |
| 640-806, gnl|Hg17|chr5 (74690974-74691140) | |
| 640-806, gnl|mm7|chr13 (93721376-93721255) | |
| 640-806, gnl|Mm7|chr13 (93721378-93721212) | |
| 640-806, gnl|panTro1|chr20 (57575029-57575148) | |
| 640-806, gnl|rheMac2|chr6 (71559680-71559799) | |
| 640-806, gnl|rn3|chr2 (27050937-27050816) | |
| 957-1981, gnl|bosTau2|chr10 (1895464-1894452) | |
| 957-1981, gnl|Hg17|chr5 (74691867-74692867) | |
| 957-1981, gnl|Mm7|chr13 (93719994-93719151) |
| Expressed library(ies): 14 entry(ies) | More info |
| Expressed library(ies): 14 entry(ies) | Help | Less info |
| fbs (0.701385) | |
| ecc (0.345105) | |
| eye (0.341006) | |
| ece (0.229305) | |
| tes (0.207814) | |
| jej (0.197844) | |
| fcc (0.197785) | |
| ill (0.175593) | |
| cje (0.165235) | |
| liv (0.146284) | |
| lin (0.145603) | |
| sug (0.127291) | |
| eru (0.120048) | |
| ebs (0.118301) |
| Expressed library(ies): 14 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fbs (0.701385) | |
| ecc (0.345105) | |
| eye (0.341006) | |
| ece (0.229305) | |
| tes (0.207814) | |
| jej (0.197844) | |
| fcc (0.197785) | |
| ill (0.175593) | |
| cje (0.165235) | |
| liv (0.146284) | |
| lin (0.145603) | |
| sug (0.127291) | |
| eru (0.120048) | |
| ebs (0.118301) |