Ss1.1-Pig4-TMW8065K21.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AAAACGTACACCTCTGCGGACCCAACCTCAGGTCACGCCAGGATGTCTGACGCCGAAGAG CAGGAATATGAGGAGGAGCAGCCTGAAGAAGAGGAGGCTGCTGAGGAGGAGGAAGCCCCC GAGGAGCCAGAGCCGGTGGCAGAGCGAGAAGAGGAGCGCCCCAAGCCAAGCCGTCCCGTG GTGCCTCCACTGATCCCCCCGAAGATCCCAGAGGGGGAACGCGTGGACTTCGATGACATT CACCGCAAGCGCATGGAAAAAGATCTGCTGGAGCTGCAGACGCTCATTGACGTGCATTTT GAGCAGCGCAAGAAAGAGGAAGAGGAGCTCGTGGCGCTGAAAGAGCGTATTGAGCGGCGC CGGGCAGAGAGAGCTGAGCAACAGCGCTTCAGAACCGAGAAGGAGCGGGAGCGTCAGGCT AAACTGGCGGAGGAGAAGATGAGGAAGGAAGAGGAAGAGGCTAAGAAGCGGGCCGAGGAT GACGCCAAAAAGAAGAAGGTTCTGTCCAACATGGGGGCCCATTTTGGGGGTTACCTGGTC AAGGCAGAACAGAAGCGGGGCAAGCGCCAGACAGGGCGTGAGATGAAACAGCGCATTCTG TCCGAGCGTAAAAAGCCTCTGAATATCGACCACATGGGAGAGGACCAGCTCCGGGAGAAG GCCCAGGAACTGTCGGATTGGATCCACCAGCTGGAGTCGGAGAAGTTTGACCTGATGGCG AAGCTGAAGCAGCAGAAATACGAGATCAACGTGCTGTACAACCGCATCAGCCACGCCCAG AAGTTCCGGAAGGGGGCCGGGAAAGGCCGCGTCGGAGGCCGCTGGAAGTGAGCAGGTGGG CGCTCGCCCACCCTGAGCACCGAGGAGCCGCCGTTGCAGTGTGTGTCCCACCTGGGGCTT GAAATAAATGCTCCACTCCTGGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AAAACGTACACCTCTGCGGACCCAACCTCAGGTCACGCCAGGATGTCTGACGCCGAAGAG CAGGAATATGAGGAGGAGCAGCCTGAAGAAGAGGAGGCTGCTGAGGAGGAGGAAGCCCCC GAGGAGCCAGAGCCGGTGGCAGAGCGAGAAGAGGAGCGCCCCAAGCCAAGCCGTCCCGTG GTGCCTCCACTGATCCCCCCGAAGATCCCAGAGGGGGAACGCGTGGACTTCGATGACATT CACCGCAAGCGCATGGAAAAAGATCTGCTGGAGCTGCAGACGCTCATTGACGTGCATTTT GAGCAGCGCAAGAAAGAGGAAGAGGAGCTCGTGGCGCTGAAAGAGCGTATTGAGCGGCGC CGGGCAGAGAGAGCTGAGCAACAGCGCTTCAGAACCGAGAAGGAGCGGGAGCGTCAGGCT AAACTGGCGGAGGAGAAGATGAGGAAGGAAGAGGAAGAGGCTAAGAAGCGGGCCGAGGAT GACGCCAAAAAGAAGAAGGTTCTGTCCAACATGGGGGCCCATTTTGGGGGTTACCTGGTC AAGGCAGAACAGAAGCGGGGCAAGCGCCAGACAGGGCGTGAGATGAAACAGCGCATTCTG TCCGAGCGTAAAAAGCCTCTGAATATCGACCACATGGGAGAGGACCAGCTCCGGGAGAAG GCCCAGGAACTGTCGGATTGGATCCACCAGCTGGAGTCGGAGAAGTTTGACCTGATGGCG AAGCTGAAGCAGCAGAAATACGAGATCAACGTGCTGTACAACCGCATCAGCCACGCCCAG AAGTTCCGGAAGGGGGCCGGGAAAGGCCGCGTCGGAGGCCGCTGGAAGTGAGCAGGTGGG CGCTCGCCCACCCTGAGCACCGAGGAGCCGCCGTTGCAGTGTGTGTCCCACCTGGGGCTT GAAATAAATGCTCCACTCCTGGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 235-350, gnl|bosTau2|chr18 (55287327-55287212) | |
| 235-350, gnl|canFam2|chr1 (105561271-105561148) | |
| 235-350, gnl|danRer3|chr3 (28418060-28417937) | |
| 235-350, gnl|dasNov1|scaffold_288774 (1153-1030) | |
| 235-350, gnl|echTel1|scaffold_270322 (2378-2501) | |
| 235-350, gnl|fr1|chrUn (26982503-26982380) | |
| 235-350, gnl|galGal2|chr32 (319874-319997) | |
| 235-350, gnl|hg17|chr19 (60344362-60344485) | |
| 235-350, gnl|Hg17|chr19 (60344482-60344367) | |
| 235-350, gnl|loxAfr1|scaffold_58296 (2303-2424) | |
| 235-350, gnl|mm7|chr7 (4082438-4082561) | |
| 235-350, gnl|Mm7|chr7 (4082558-4082443) | |
| 235-350, gnl|monDom2|scaffold_393 (78768-78645) | |
| 235-350, gnl|oryCun1|scaffold_130692 (785-908) | |
| 235-350, gnl|panTro1|chr20 (57767080-57767203) | |
| 235-350, gnl|rheMac2|chr19 (61146393-61146516) | |
| 235-350, gnl|rn3|chr1 (68118874-68118751) | |
| 235-350, gnl|tetNig1|chr15 (7204596-7204474) | |
| 235-350, gnl|xenTro1|scaffold_374 (466395-466518) | |
| 429-544, gnl|bosTau2|chr18 (55285111-55284996) | |
| 429-544, gnl|Hg17|chr19 (60341255-60341140) | |
| 429-544, gnl|Mm7|chr7 (4081615-4081500) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 235-350, gnl|bosTau2|chr18 (55287327-55287212) | |
| 235-350, gnl|canFam2|chr1 (105561271-105561148) | |
| 235-350, gnl|danRer3|chr3 (28418060-28417937) | |
| 235-350, gnl|dasNov1|scaffold_288774 (1153-1030) | |
| 235-350, gnl|echTel1|scaffold_270322 (2378-2501) | |
| 235-350, gnl|fr1|chrUn (26982503-26982380) | |
| 235-350, gnl|galGal2|chr32 (319874-319997) | |
| 235-350, gnl|hg17|chr19 (60344362-60344485) | |
| 235-350, gnl|Hg17|chr19 (60344482-60344367) | |
| 235-350, gnl|loxAfr1|scaffold_58296 (2303-2424) | |
| 235-350, gnl|mm7|chr7 (4082438-4082561) | |
| 235-350, gnl|Mm7|chr7 (4082558-4082443) | |
| 235-350, gnl|monDom2|scaffold_393 (78768-78645) | |
| 235-350, gnl|oryCun1|scaffold_130692 (785-908) | |
| 235-350, gnl|panTro1|chr20 (57767080-57767203) | |
| 235-350, gnl|rheMac2|chr19 (61146393-61146516) | |
| 235-350, gnl|rn3|chr1 (68118874-68118751) | |
| 235-350, gnl|tetNig1|chr15 (7204596-7204474) | |
| 235-350, gnl|xenTro1|scaffold_374 (466395-466518) | |
| 429-544, gnl|bosTau2|chr18 (55285111-55284996) | |
| 429-544, gnl|Hg17|chr19 (60341255-60341140) | |
| 429-544, gnl|Mm7|chr7 (4081615-4081500) |
| Expressed library(ies): 17 entry(ies) | More info |
| Expressed library(ies): 17 entry(ies) | Help | Less info |
| ssp (3.79455) | |
| mas (3.15457) | |
| nms (1.28315) | |
| ldo (0.776021) | |
| eru (0.60024) | |
| nep (0.551775) | |
| ese (0.379507) | |
| jca (0.34188) | |
| eye (0.341006) | |
| vin (0.332557) | |
| ste (0.270416) | |
| fli (0.202881) | |
| tbr (0.154178) | |
| ctl (0.153069) | |
| pty (0.142714) | |
| nca (0.136874) | |
| che (0.136314) |
| Expressed library(ies): 17 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ssp (3.79455) | |
| mas (3.15457) | |
| nms (1.28315) | |
| ldo (0.776021) | |
| eru (0.60024) | |
| nep (0.551775) | |
| ese (0.379507) | |
| jca (0.34188) | |
| eye (0.341006) | |
| vin (0.332557) | |
| ste (0.270416) | |
| fli (0.202881) | |
| tbr (0.154178) | |
| ctl (0.153069) | |
| pty (0.142714) | |
| nca (0.136874) | |
| che (0.136314) |