Ss1.1-Pig4-TMW8065K22.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TCGTGGAATTGAACCTGTCATTTTCTGGGTCTCCTACATGTCGGATGGGAGCATCAGTGA GGCCCCAGCCTTATTGCTTCCACAACAGATGACGTGGCTATTTCTTCTCCAGCCTCCAGC CCTCATAGGTTCTACCCTTCCAGGGCTCCTTCCCTTCTCCTGCTAGTTAGTTATCACCTA CTACCAGTGAGCTACCAGGTCTCTAGGGGCCTGAGAGGCTCTCAGGAGAATCCAGGGAAA CGGTGAGCCCAGGAGTTACCCATCCTTGGTTTCATCCCTCTCCTGGCTCTTCTCCCTCTT TAGGCCATAATTTCCCTGGTGCCAGCTTCTTTTCCTCCTGGGGCATCCTCATCCTTGGGC TCTCTGCTGCAGATTGGCTGTGCCACCTTCCAGTGGGCCACTGGTAATGCCGGCGGGGTC TCTGCAGGCACAAAGCTGAAGAAGTGAGGGCAGTAATTCTGCCTCCACCCTGGCTTCCCC GAAGCCCTAGAGCTCCATCCTTAGGGGAGAAGGCCTATAGATGCCATATTTGAATTCCAT TACTTTCAGACCTGGAAAGTTAAACTGGCTGGAGTTATCATTTTGTTTCCCAGTCTAACT GTGGCCCTGGGACAAGCCTTTTTGAGAAGTGGTTTATTTTGCTTTACACATAGATCTGTT CCAACAGTTTTGTGTAAACCAAATGCTATTTTTCAGTGCATTTGGACAGCTGACCATTTA AAAACAGCCTGTGATTGCTTCTTTTGTAAAGCAGACAACCTCCCTCTACTTTTAGCTGTT TTGACTATTTGGATTTTCACATATTGGGCTTACCCAGAGTGGAACGCACCTCTGCGGAGC TGTGGTTGACGCTGGGTAGACATCTGCATCTGTGTCGTGTGTGTGGTGTGGCTGACCAGT AGGTGAGTATTCCTGCGTGTGTGAGTGAAGCCACTCCCAGGCTGGTGCTCTCCTCCTGTG CCCGGTGACTGCCCAGTGGCAGCTCCAGCTGCCCTTCACTCCCACCTGCTGCCAAAGTCC CTGTGCTAATGGGATTACAAATATGAAAAGTGGAAAAAAATTTTTCGTAAACTTTGTTTT ATATTAAAAAAAAAATCCATAAGTCTGTGTGTGTTAAACATGAGGTCCTGCCTCTGTGGC TGTGTTTGAAAAAATAAAGTTTTATTAGAATAATCCATTTCCCCTAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TCGTGGAATTGAACCTGTCATTTTCTGGGTCTCCTACATGTCGGATGGGAGCATCAGTGA GGCCCCAGCCTTATTGCTTCCACAACAGATGACGTGGCTATTTCTTCTCCAGCCTCCAGC CCTCATAGGTTCTACCCTTCCAGGGCTCCTTCCCTTCTCCTGCTAGTTAGTTATCACCTA CTACCAGTGAGCTACCAGGTCTCTAGGGGCCTGAGAGGCTCTCAGGAGAATCCAGGGAAA CGGTGAGCCCAGGAGTTACCCATCCTTGGTTTCATCCCTCTCCTGGCTCTTCTCCCTCTT TAGGCCATAATTTCCCTGGTGCCAGCTTCTTTTCCTCCTGGGGCATCCTCATCCTTGGGC TCTCTGCTGCAGATTGGCTGTGCCACCTTCCAGTGGGCCACTGGTAATGCCGGCGGGGTC TCTGCAGGCACAAAGCTGAAGAAGTGAGGGCAGTAATTCTGCCTCCACCCTGGCTTCCCC GAAGCCCTAGAGCTCCATCCTTAGGGGAGAAGGCCTATAGATGCCATATTTGAATTCCAT TACTTTCAGACCTGGAAAGTTAAACTGGCTGGAGTTATCATTTTGTTTCCCAGTCTAACT GTGGCCCTGGGACAAGCCTTTTTGAGAAGTGGTTTATTTTGCTTTACACATAGATCTGTT CCAACAGTTTTGTGTAAACCAAATGCTATTTTTCAGTGCATTTGGACAGCTGACCATTTA AAAACAGCCTGTGATTGCTTCTTTTGTAAAGCAGACAACCTCCCTCTACTTTTAGCTGTT TTGACTATTTGGATTTTCACATATTGGGCTTACCCAGAGTGGAACGCACCTCTGCGGAGC TGTGGTTGACGCTGGGTAGACATCTGCATCTGTGTCGTGTGTGTGGTGTGGCTGACCAGT AGGTGAGTATTCCTGCGTGTGTGAGTGAAGCCACTCCCAGGCTGGTGCTCTCCTCCTGTG CCCGGTGACTGCCCAGTGGCAGCTCCAGCTGCCCTTCACTCCCACCTGCTGCCAAAGTCC CTGTGCTAATGGGATTACAAATATGAAAAGTGGAAAAAAATTTTTCGTAAACTTTGTTTT ATATTAAAAAAAAAATCCATAAGTCTGTGTGTGTTAAACATGAGGTCCTGCCTCTGTGGC TGTGTTTGAAAAAATAAAGTTTTATTAGAATAATCCATTTCCCCTAAAAAAAAAAAAAAA |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 43-318, - strand, RNAz p=0.997587 | |
| 359-477, - strand, RNAz p=0.548901 | |
| 596-789, - strand, RNAz p=0.991892 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 43-318, - strand, RNAz p=0.997587 | |
| 359-477, - strand, RNAz p=0.548901 | |
| 596-789, - strand, RNAz p=0.991892 |
| Predicted microRNA(s): 3 entry(ies) | More info |
| Predicted microRNA(s): 3 entry(ies) | Help | Less info |
| 198-322, + strand, RNAmicro p=0.999737 | |
| 635-706, + strand, RNAmicro p=0.994537 | |
| 236-349, - strand, RNAmicro p=0.979481 |
| Predicted microRNA(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
| 198-322, + strand, RNAmicro p=0.999737 | |
| 635-706, + strand, RNAmicro p=0.994537 | |
| 236-349, - strand, RNAmicro p=0.979481 |
| Similar Transcript(s): 12 entry(ies) | More info |
| Similar Transcript(s): 12 entry(ies) | Help | Less info |
| 43-318, CJ010655 full-length enriched swine cDNA library, adult mesenteric (dbj|CJ010655.1|), blast E-value=0, identity=100% | |
| 95-318, BP230009A20C8 Soares normalized bovine placenta Bos taurus cDNA (gb|AW462414.1|), blast E-value=2e-39, identity=84.96% | |
| 95-318, 256229 MARC BSM Bos taurus cDNA 5', mRNA sequence (gb|BF430254.1|), blast E-value=2e-39, identity=84.96% | |
| 43-318, 4064145 BARC 10BOV Bos taurus cDNA clone 10BOV10_B10 5', mRNA (gb|CK941014.1|), blast E-value=6.99949e-42, identity=83.45% | |
| 100-314, CT020004A20A03 Equine Articular Cartilage cDNA Library Equus (gb|CX593139.1|), blast E-value=9.94922e-44, identity=86.18% | |
| 43-318, POSM0605010_J14R porcine skeletal muscle cDNA library (PoSM) Sus (gb|DV899095.1|), blast E-value=0, identity=100% | |
| 596-776, CJ010655 full-length enriched swine cDNA library, adult mesenteric (dbj|CJ010655.1|), blast E-value=0, identity=100% | |
| 599-789, DB363584 NT2RM4 Homo sapiens cDNA clone NT2RM4002619 3', mRNA (dbj|DB363584.1|), blast E-value=0, identity=90.16% | |
| 596-789, DB819086 full-length enriched swine cDNA library, adult thymus Sus (dbj|DB819086.1|), blast E-value=0, identity=100% | |
| 599-789, 17000600002569 GRN_PREHEP Homo sapiens cDNA 5', mRNA sequence (gb|CN363539.1|), blast E-value=0, identity=90.16% | |
| 599-785, Oa_splbn_10C21_M13reverse Sheep spleen\brain pSport1 library Ovis (gb|CN822241.1|), blast E-value=0, identity=92.02% | |
| 599-789, KB-EST0002344 BNS6 Homo sapiens cDNA, mRNA sequence (gb|DT217260.1|), blast E-value=0, identity=90.16% |
| Similar Transcript(s): 12 entry(ies) | Help | Less info |
PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
| 43-318, CJ010655 full-length enriched swine cDNA library, adult mesenteric (dbj|CJ010655.1|), blast E-value=0, identity=100% | |
| 95-318, BP230009A20C8 Soares normalized bovine placenta Bos taurus cDNA (gb|AW462414.1|), blast E-value=2e-39, identity=84.96% | |
| 95-318, 256229 MARC BSM Bos taurus cDNA 5', mRNA sequence (gb|BF430254.1|), blast E-value=2e-39, identity=84.96% | |
| 43-318, 4064145 BARC 10BOV Bos taurus cDNA clone 10BOV10_B10 5', mRNA (gb|CK941014.1|), blast E-value=6.99949e-42, identity=83.45% | |
| 100-314, CT020004A20A03 Equine Articular Cartilage cDNA Library Equus (gb|CX593139.1|), blast E-value=9.94922e-44, identity=86.18% | |
| 43-318, POSM0605010_J14R porcine skeletal muscle cDNA library (PoSM) Sus (gb|DV899095.1|), blast E-value=0, identity=100% | |
| 596-776, CJ010655 full-length enriched swine cDNA library, adult mesenteric (dbj|CJ010655.1|), blast E-value=0, identity=100% | |
| 599-789, DB363584 NT2RM4 Homo sapiens cDNA clone NT2RM4002619 3', mRNA (dbj|DB363584.1|), blast E-value=0, identity=90.16% | |
| 596-789, DB819086 full-length enriched swine cDNA library, adult thymus Sus (dbj|DB819086.1|), blast E-value=0, identity=100% | |
| 599-789, 17000600002569 GRN_PREHEP Homo sapiens cDNA 5', mRNA sequence (gb|CN363539.1|), blast E-value=0, identity=90.16% | |
| 599-785, Oa_splbn_10C21_M13reverse Sheep spleen\brain pSport1 library Ovis (gb|CN822241.1|), blast E-value=0, identity=92.02% | |
| 599-789, KB-EST0002344 BNS6 Homo sapiens cDNA, mRNA sequence (gb|DT217260.1|), blast E-value=0, identity=90.16% |
| Aligned organism(s): 3 entry(ies) | More info |
| Aligned organism(s): 3 entry(ies) | Help | Less info |
| 4-1197, gnl|bosTau2|chr12 (22747192-22746023) | |
| 4-1197, gnl|Hg17|chr5 (137712162-137713300) | |
| 4-1197, gnl|Mm7|chr18 (35148691-35149844) |
| Aligned organism(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 4-1197, gnl|bosTau2|chr12 (22747192-22746023) | |
| 4-1197, gnl|Hg17|chr5 (137712162-137713300) | |
| 4-1197, gnl|Mm7|chr18 (35148691-35149844) |
| Expressed library(ies): 13 entry(ies) | More info |
| Expressed library(ies): 13 entry(ies) | Help | Less info |
| hlv (0.417769) | |
| fhi (0.339155) | |
| cga (0.279096) | |
| tes (0.207814) | |
| fcc (0.197785) | |
| fty (0.17584) | |
| csp (0.161186) | |
| cag (0.151194) | |
| bfe (0.149858) | |
| ssp (0.13552) | |
| lyg (0.133103) | |
| ese (0.126502) | |
| ldo (0.0970026) |
| Expressed library(ies): 13 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| hlv (0.417769) | |
| fhi (0.339155) | |
| cga (0.279096) | |
| tes (0.207814) | |
| fcc (0.197785) | |
| fty (0.17584) | |
| csp (0.161186) | |
| cag (0.151194) | |
| bfe (0.149858) | |
| ssp (0.13552) | |
| lyg (0.133103) | |
| ese (0.126502) | |
| ldo (0.0970026) |