Ss1.1-Pig4-TMW8065L11.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCCGGGGCCGGCGCCCCGAGCCAGGAGCGCCTGCGGGCGCTGGCGGGCTTCCAGCAGCGG GCCCTGAGCCACGCGCTCACGTTCCCTGCCCTGCGGCGCCTCGTCTACTCCACGTGCTCC CTCTGCCAGGAGGAGAATGAAGATGTGGTACAAGCTGCCCTGCAGCAGAGCCCAGGAGCC TTCAGGCTGGCTCCCGTCCTCCCCTCCTGGCCGCATCGAGGCCTCGGCACGTTTCCAGGT GTTGAACACTGCCTCCGGGCCTCCCCTGACACCACGCTCACCGGTGGATTCTTCATCGCT GTGCTTGAACGGGTAGAGGTGCCAAGTGCCGTCTCACAGGCCGAAGCATCCATCCCAGAA CTGACGTCCAGCCCAGGCCCAAGGAGGAAGAGACGGCGGCGAAAGGCAGCGGCCACGCCC AGCACACAGCCTGGCACGTAGCTGGGGCTCAGAGCCTGGACTGCTCAGGTCCTCCTCCCA GCTCGTCTCCGGCCCTCAGTGCCGGGCAGTGGGCTTGTGTGGAAAGGGTCTTTCCATGGC TGTAGGAATTAAACGGGCGAGCCTGCTCCTCCAGCCGGGGAGGGTGGCCCTCCCTCGGGC TGTGCCGCTGCCCCTGCGCTGTGTTCTTGCTGGGAGGCACTGCTGCCCACGGAAATAAAA GGCAGGACATGGTCTACGATAGATCACAGTTTTTTATTCTTATGACATAAGCAAGGAGAA AAACCTCACATTCATACTAAAAATTCCAACTAGACTCACAGGATTCAGTCTTCACTCGTG ATGGAAAGTCCCAGCCTCCCGTTGCTGTCCAGTGCACGTCCACACCCGCACGCACACACT CACACTCAGGCCGCGCCAGGCCGCCTGCTTCGGGGGGTTCCTGGACCAACGGTCCTGCCC GTGGAACCGAGGTAAACGAGCTCCGCGCGCGCGCCAGCCTAAGGGGTCTACCTTCGGGAA GGTATAGGCAGGAGCCTCGCTTCCAGACCCGTGCCCCGCCCCGCCCGTGGCTCGAGGTTC GGGTCCCTCTGCAGCTGCACACACAGCGGTGAGTAGTGGAGCTCTCCCTGGGGGCGCAGT CCCCTGCCAGCGCCAGCGGACGTTCACCCTCAGTCACAAAGGGGAGGGGGACTAGTCACA GCTACATCACATTTATAAAATAAGAATTACATTTTCTGTTTCCAGAAGGAGCTCCAGTCC CTTGGAAGAGCTGCCTGGGACAGCACGTGAGCCTCTTCTTCACACAGGCATAACTTAACT ATACAGCTAATTTCTAGTCAATAGCATTTATACTTAACCACCTCAATGAACCAAGCTTGA AGGAATTTAAAAGGCAATTTAGCTTAAATACAAAAATAAATTTTTTATTTTGTTAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCCGGGGCCGGCGCCCCGAGCCAGGAGCGCCTGCGGGCGCTGGCGGGCTTCCAGCAGCGG GCCCTGAGCCACGCGCTCACGTTCCCTGCCCTGCGGCGCCTCGTCTACTCCACGTGCTCC CTCTGCCAGGAGGAGAATGAAGATGTGGTACAAGCTGCCCTGCAGCAGAGCCCAGGAGCC TTCAGGCTGGCTCCCGTCCTCCCCTCCTGGCCGCATCGAGGCCTCGGCACGTTTCCAGGT GTTGAACACTGCCTCCGGGCCTCCCCTGACACCACGCTCACCGGTGGATTCTTCATCGCT GTGCTTGAACGGGTAGAGGTGCCAAGTGCCGTCTCACAGGCCGAAGCATCCATCCCAGAA CTGACGTCCAGCCCAGGCCCAAGGAGGAAGAGACGGCGGCGAAAGGCAGCGGCCACGCCC AGCACACAGCCTGGCACGTAGCTGGGGCTCAGAGCCTGGACTGCTCAGGTCCTCCTCCCA GCTCGTCTCCGGCCCTCAGTGCCGGGCAGTGGGCTTGTGTGGAAAGGGTCTTTCCATGGC TGTAGGAATTAAACGGGCGAGCCTGCTCCTCCAGCCGGGGAGGGTGGCCCTCCCTCGGGC TGTGCCGCTGCCCCTGCGCTGTGTTCTTGCTGGGAGGCACTGCTGCCCACGGAAATAAAA GGCAGGACATGGTCTACGATAGATCACAGTTTTTTATTCTTATGACATAAGCAAGGAGAA AAACCTCACATTCATACTAAAAATTCCAACTAGACTCACAGGATTCAGTCTTCACTCGTG ATGGAAAGTCCCAGCCTCCCGTTGCTGTCCAGTGCACGTCCACACCCGCACGCACACACT CACACTCAGGCCGCGCCAGGCCGCCTGCTTCGGGGGGTTCCTGGACCAACGGTCCTGCCC GTGGAACCGAGGTAAACGAGCTCCGCGCGCGCGCCAGCCTAAGGGGTCTACCTTCGGGAA GGTATAGGCAGGAGCCTCGCTTCCAGACCCGTGCCCCGCCCCGCCCGTGGCTCGAGGTTC GGGTCCCTCTGCAGCTGCACACACAGCGGTGAGTAGTGGAGCTCTCCCTGGGGGCGCAGT CCCCTGCCAGCGCCAGCGGACGTTCACCCTCAGTCACAAAGGGGAGGGGGACTAGTCACA GCTACATCACATTTATAAAATAAGAATTACATTTTCTGTTTCCAGAAGGAGCTCCAGTCC CTTGGAAGAGCTGCCTGGGACAGCACGTGAGCCTCTTCTTCACACAGGCATAACTTAACT ATACAGCTAATTTCTAGTCAATAGCATTTATACTTAACCACCTCAATGAACCAAGCTTGA AGGAATTTAAAAGGCAATTTAGCTTAAATACAAAAATAAATTTTTTATTTTGTTAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 872-991, - strand, RNAz p=0.626604 | |
| 1162-1273, - strand, RNAz p=0.979252 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 872-991, - strand, RNAz p=0.626604 | |
| 1162-1273, - strand, RNAz p=0.979252 |
| Aligned organism(s): 23 entry(ies) | More info |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
| 11-186, gnl|bosTau2|chr25 (28294153-28294328) | |
| 11-186, gnl|canFam2|chr6 (9900017-9899788) | |
| 11-186, gnl|danRer3|chr10 (32502316-32502103) | |
| 11-186, gnl|echTel1|scaffold_83985 (4707-4473) | |
| 11-186, gnl|fr1|chrUn (151747984-151748178) | |
| 11-186, gnl|galGal2|chr19 (189848-189627) | |
| 11-186, gnl|hg17|chr7 (71864079-71864307) | |
| 11-186, gnl|Hg17|chr7 (72162648-72162473) | |
| 11-186, gnl|loxAfr1|scaffold_75821 (3616-3390) | |
| 11-186, gnl|mm7|chr5 (134346770-134346543) | |
| 11-186, gnl|Mm7|chr5 (134346591-134346766) | |
| 11-186, gnl|monDom2|scaffold_77 (5652828-5653054) | |
| 11-186, gnl|oryCun1|scaffold_192088 (2733-2508) | |
| 11-186, gnl|panTro1|chr6 (75779407-75779179) | |
| 11-186, gnl|rheMac2|chr3 (50821216-50821444) | |
| 11-186, gnl|rn3|chr12 (22439991-22440216) | |
| 11-186, gnl|tetNig1|chr9 (1017708-1017928) | |
| 11-186, gnl|xenTro1|scaffold_32 (228008-228234) | |
| 528-1380, gnl|bosTau2|chr25 (28294761-28295579) | |
| 528-1380, gnl|Hg17|chr7 (72162033-72161170) | |
| 528-1380, gnl|Mm7|chr5 (134347286-134348085) | |
| 675-1005, gnl|bosTau2|chr15 (34719532-34719198) | |
| 675-1005, gnl|Hg17|chr7 (72161878-72161575) |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 11-186, gnl|bosTau2|chr25 (28294153-28294328) | |
| 11-186, gnl|canFam2|chr6 (9900017-9899788) | |
| 11-186, gnl|danRer3|chr10 (32502316-32502103) | |
| 11-186, gnl|echTel1|scaffold_83985 (4707-4473) | |
| 11-186, gnl|fr1|chrUn (151747984-151748178) | |
| 11-186, gnl|galGal2|chr19 (189848-189627) | |
| 11-186, gnl|hg17|chr7 (71864079-71864307) | |
| 11-186, gnl|Hg17|chr7 (72162648-72162473) | |
| 11-186, gnl|loxAfr1|scaffold_75821 (3616-3390) | |
| 11-186, gnl|mm7|chr5 (134346770-134346543) | |
| 11-186, gnl|Mm7|chr5 (134346591-134346766) | |
| 11-186, gnl|monDom2|scaffold_77 (5652828-5653054) | |
| 11-186, gnl|oryCun1|scaffold_192088 (2733-2508) | |
| 11-186, gnl|panTro1|chr6 (75779407-75779179) | |
| 11-186, gnl|rheMac2|chr3 (50821216-50821444) | |
| 11-186, gnl|rn3|chr12 (22439991-22440216) | |
| 11-186, gnl|tetNig1|chr9 (1017708-1017928) | |
| 11-186, gnl|xenTro1|scaffold_32 (228008-228234) | |
| 528-1380, gnl|bosTau2|chr25 (28294761-28295579) | |
| 528-1380, gnl|Hg17|chr7 (72162033-72161170) | |
| 528-1380, gnl|Mm7|chr5 (134347286-134348085) | |
| 675-1005, gnl|bosTau2|chr15 (34719532-34719198) | |
| 675-1005, gnl|Hg17|chr7 (72161878-72161575) |
| Expressed library(ies): 8 entry(ies) | More info |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
| fty (0.351679) | |
| pla (0.267344) | |
| cki (0.165235) | |
| csp (0.161186) | |
| che (0.136314) | |
| kid (0.129735) | |
| ese (0.126502) | |
| ecc (0.115035) |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fty (0.351679) | |
| pla (0.267344) | |
| cki (0.165235) | |
| csp (0.161186) | |
| che (0.136314) | |
| kid (0.129735) | |
| ese (0.126502) | |
| ecc (0.115035) |