Non-Coding RNA Search

Ss1.1-Pig4-TMW8065M22.3

Sequence:


               
               TGAAGCGGCATCAGGCCTACGAGTTCCAGTTTGGCGCAGCCTACGCCTGGATGATGTGCG
TCTTCACGGTGGTCATGACCTACAGTATCACCTGCCCCATCATCGTGCCCTTCGGGCTCA
TGTACATGCTGCTGAAGCACCTGGTAGACAGGTACAATCTCTACTACGCCTACCTGCCGG
CCAAGCTGGACAAGAAGATCCACTCGGGGGCCGTGAACCAGGTGGTGGCCGCGCCCATCC
TCTGCCTCTTCTGGCTGCTCTTCTTCTCTACCATGCGCACCGGGTTTCTGGCCCCCACGT
CCATGTTCACATTTGTGGTCCTGGTCATCACCATTGTCATCTGTTTCTGCCACGTCTGCT
TCGGACACTTCAAATACCTCAGTGCCCACAACTACAAGATCGAGCACACGGAGACAGACA
CCGTGGACCCCAGGAGCAACGGACGCCCCCCCAGTTCTGCCGCTGTCCCCAAATCTGCGA
AATACATCGCTCAGGTGCTGCAGGACTCAGAAGTGGACGGGGATGGGGGTCCTGGGAGCT
CGGGGGACGAGCCCCCGTCATCCTCGTCCCAGGACGAGGAGTTGCTGATGCCGCCTGACG
GCCTCACGGACACAGACTTCCAGTCCTGTGAGGACAGCCTCATAGAGAATGAGATTCACC
AGTAAGGGGAGGGAGGGCCCTGGCGGCCTCGACCTGCCCCCACCCGCCCCGCCCCCCACG
GACATTAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGAAGCGGCATCAGGCCTACGAGTTCCAGTTTGGCGCAGCCTACGCCTGGATGATGTGCG
TCTTCACGGTGGTCATGACCTACAGTATCACCTGCCCCATCATCGTGCCCTTCGGGCTCA
TGTACATGCTGCTGAAGCACCTGGTAGACAGGTACAATCTCTACTACGCCTACCTGCCGG
CCAAGCTGGACAAGAAGATCCACTCGGGGGCCGTGAACCAGGTGGTGGCCGCGCCCATCC
TCTGCCTCTTCTGGCTGCTCTTCTTCTCTACCATGCGCACCGGGTTTCTGGCCCCCACGT
CCATGTTCACATTTGTGGTCCTGGTCATCACCATTGTCATCTGTTTCTGCCACGTCTGCT
TCGGACACTTCAAATACCTCAGTGCCCACAACTACAAGATCGAGCACACGGAGACAGACA
CCGTGGACCCCAGGAGCAACGGACGCCCCCCCAGTTCTGCCGCTGTCCCCAAATCTGCGA
AATACATCGCTCAGGTGCTGCAGGACTCAGAAGTGGACGGGGATGGGGGTCCTGGGAGCT
CGGGGGACGAGCCCCCGTCATCCTCGTCCCAGGACGAGGAGTTGCTGATGCCGCCTGACG
GCCTCACGGACACAGACTTCCAGTCCTGTGAGGACAGCCTCATAGAGAATGAGATTCACC
AGTAAGGGGAGGGAGGGCCCTGGCGGCCTCGACCTGCCCCCACCCGCCCCGCCCCCCACG
GACATTAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|20072900|gb|AAH26370.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|20072900|gb|AAH26370.1|

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               153-272, - strand, RNAz p=0.724301
               

               
               479-736, - strand, RNAz p=0.996801
               

               
               624-736, - strand, RNAz p=0.748671

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               153-272, - strand, RNAz p=0.724301
               

               
               479-736, - strand, RNAz p=0.996801
               

               
               624-736, - strand, RNAz p=0.748671

Aligned organism(s): 17 entry(ies)

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Aligned organism(s): 17 entry(ies)

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               114-285, gnl|bosTau2|chr16 (17229979-17229809)
               

               
               114-285, gnl|Hg17|chr1 (222344516-222344346)
               

               
               114-285, gnl|Mm7|chr1 (180951615-180951785)
               


               
               479-736, gnl|bosTau2|chr23 (17634046-17633789)
               

               
               479-736, gnl|canFam2|chr12 (15577946-15578183)
               

               
               479-736, gnl|danRer3|chr13 (45655229-45655033)
               

               
               479-736, gnl|fr1|chrUn (117851092-117851290)
               

               
               479-736, gnl|galGal2|chr3 (26648390-26648160)
               

               
               479-736, gnl|hg17|chr6 (44230370-44230606)
               

               
               479-736, gnl|Hg17|chr6 (44230406-44230664)
               

               
               479-736, gnl|mm7|chr17 (43790420-43790187)
               

               
               479-736, gnl|Mm7|chr17 (43790385-43790123)
               

               
               479-736, gnl|monDom2|scaffold_0 (196743778-196743478)
               

               
               479-736, gnl|panTro1|chr5 (44837581-44837818)
               

               
               479-736, gnl|rheMac2|chr4 (44074753-44074989)
               

               
               479-736, gnl|rn3|chr9 (10935301-10935535)
               

               
               479-736, gnl|tetNig1|chrUn_random (47653098-47653293)

Aligned organism(s): 17 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               114-285, gnl|bosTau2|chr16 (17229979-17229809)
               

               
               114-285, gnl|Hg17|chr1 (222344516-222344346)
               

               
               114-285, gnl|Mm7|chr1 (180951615-180951785)
               


               
               479-736, gnl|bosTau2|chr23 (17634046-17633789)
               

               
               479-736, gnl|canFam2|chr12 (15577946-15578183)
               

               
               479-736, gnl|danRer3|chr13 (45655229-45655033)
               

               
               479-736, gnl|fr1|chrUn (117851092-117851290)
               

               
               479-736, gnl|galGal2|chr3 (26648390-26648160)
               

               
               479-736, gnl|hg17|chr6 (44230370-44230606)
               

               
               479-736, gnl|Hg17|chr6 (44230406-44230664)
               

               
               479-736, gnl|mm7|chr17 (43790420-43790187)
               

               
               479-736, gnl|Mm7|chr17 (43790385-43790123)
               

               
               479-736, gnl|monDom2|scaffold_0 (196743778-196743478)
               

               
               479-736, gnl|panTro1|chr5 (44837581-44837818)
               

               
               479-736, gnl|rheMac2|chr4 (44074753-44074989)
               

               
               479-736, gnl|rn3|chr9 (10935301-10935535)
               

               
               479-736, gnl|tetNig1|chrUn_random (47653098-47653293)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               eye (0.170503)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eye (0.170503)

	153-272, - strand, RNAz p=0.724301
	479-736, - strand, RNAz p=0.996801
	624-736, - strand, RNAz p=0.748671

	114-285, gnl\|bosTau2\|chr16 (17229979-17229809)
	114-285, gnl\|Hg17\|chr1 (222344516-222344346)
	114-285, gnl\|Mm7\|chr1 (180951615-180951785)

	479-736, gnl\|bosTau2\|chr23 (17634046-17633789)
	479-736, gnl\|canFam2\|chr12 (15577946-15578183)
	479-736, gnl\|danRer3\|chr13 (45655229-45655033)
	479-736, gnl\|fr1\|chrUn (117851092-117851290)
	479-736, gnl\|galGal2\|chr3 (26648390-26648160)
	479-736, gnl\|hg17\|chr6 (44230370-44230606)
	479-736, gnl\|Hg17\|chr6 (44230406-44230664)
	479-736, gnl\|mm7\|chr17 (43790420-43790187)
	479-736, gnl\|Mm7\|chr17 (43790385-43790123)
	479-736, gnl\|monDom2\|scaffold_0 (196743778-196743478)
	479-736, gnl\|panTro1\|chr5 (44837581-44837818)
	479-736, gnl\|rheMac2\|chr4 (44074753-44074989)
	479-736, gnl\|rn3\|chr9 (10935301-10935535)
	479-736, gnl\|tetNig1\|chrUn_random (47653098-47653293)