Non-Coding RNA Search

Ss1.1-Pig4-TMW8065N14.3

Sequence:


               
               GAATAGCATAAACAGAGTCTGCATATATTGATAGAGTGCTTCTTGAAAATCAGCTCTGCC
TCTTCAGGAGCTTTCTGAAATCCTGAGGTGTTGATCAAAGCTTTGTGTTTTTCATGTGAT
TTTAAAATTTTTGTGGCTTCCTTTGCTGTGATTAGTTTGCCTCCACACTAGTTGGTCTTC
TCAGAGGCTGCCTAGTGAGGCTTAGAGTTGAAATACGTAGAACTTAATTAAACGCTGCTC
TAGACCAAGAACACACTTTACTACAAAATGTCAGAAATATTAAAAATAAATGTTGATTAC
ATAAAAGCCATAGGTGCTATGGTTTAGCACTATTAAAGGAGAGGGTAACCTGGTGTCCTA
TAAAATACGATCAATACAATTTTACTAGTTAAATGGGACTAAATGGTGTTGTAGGGCTGA
TGGGAATTGGCTTTATTTTTCTATTCAGTGGTTCAGGAGTCTTTTGGCTACTTCAATTTT
TCGTTGCAGTAGCTAAGGTTTAAAAATACAGCCTTATCTACAGAAGCTGGGCAAAAAGAT
GAAACGCCATGATTATAGGGCAGCTAATTCAACAGTCTATTTAAGAAAAATGTAATATTT
CATTGGAATAATGTATTTTGGGGCTGGGGCCCACATTTCATTTAACTCTTTAGCATGCTG
CTTAGTTTAAGGAATTATATCAGGGGTTTATTTTTAAATGACGTAATGCTCACAAAAGCA
AAATATGTTGAATGTAATGAAAGAAATATTAAGAATAAAAATCTGTACTCCACCAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAATAGCATAAACAGAGTCTGCATATATTGATAGAGTGCTTCTTGAAAATCAGCTCTGCC
TCTTCAGGAGCTTTCTGAAATCCTGAGGTGTTGATCAAAGCTTTGTGTTTTTCATGTGAT
TTTAAAATTTTTGTGGCTTCCTTTGCTGTGATTAGTTTGCCTCCACACTAGTTGGTCTTC
TCAGAGGCTGCCTAGTGAGGCTTAGAGTTGAAATACGTAGAACTTAATTAAACGCTGCTC
TAGACCAAGAACACACTTTACTACAAAATGTCAGAAATATTAAAAATAAATGTTGATTAC
ATAAAAGCCATAGGTGCTATGGTTTAGCACTATTAAAGGAGAGGGTAACCTGGTGTCCTA
TAAAATACGATCAATACAATTTTACTAGTTAAATGGGACTAAATGGTGTTGTAGGGCTGA
TGGGAATTGGCTTTATTTTTCTATTCAGTGGTTCAGGAGTCTTTTGGCTACTTCAATTTT
TCGTTGCAGTAGCTAAGGTTTAAAAATACAGCCTTATCTACAGAAGCTGGGCAAAAAGAT
GAAACGCCATGATTATAGGGCAGCTAATTCAACAGTCTATTTAAGAAAAATGTAATATTT
CATTGGAATAATGTATTTTGGGGCTGGGGCCCACATTTCATTTAACTCTTTAGCATGCTG
CTTAGTTTAAGGAATTATATCAGGGGTTTATTTTTAAATGACGTAATGCTCACAAAAGCA
AAATATGTTGAATGTAATGAAAGAAATATTAAGAATAAAAATCTGTACTCCACCAAAAAA

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

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               5-775, gnl|bosTau2|chr5 (15556143-15556879)
               

               
               5-775, gnl|Mm7|chr10 (95105934-95106638)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-775, gnl|bosTau2|chr5 (15556143-15556879)
               

               
               5-775, gnl|Mm7|chr10 (95105934-95106638)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               spc (0.226732)
               

               
               ton (0.1755)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               nje (0.16592)
               

               
               lin (0.145603)
               

               
               hyp (0.142837)
               

               
               bla (0.124347)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spc (0.226732)
               

               
               ton (0.1755)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               nje (0.16592)
               

               
               lin (0.145603)
               

               
               hyp (0.142837)
               

               
               bla (0.124347)

	5-775, gnl\|bosTau2\|chr5 (15556143-15556879)
	5-775, gnl\|Mm7\|chr10 (95105934-95106638)

	spc (0.226732)
	ton (0.1755)
	sin (0.174948)
	rec (0.17307)
	nje (0.16592)
	lin (0.145603)
	hyp (0.142837)
	bla (0.124347)