Non-Coding RNA Search

Ss1.1-Pig4-TMW8065O03.3.5

Sequence:


               
               GGTTCTCCTAAGCCGCTTTCCCCAGAGCTGTCGCCACTTCCAGAGCCCAGACTTGGGAAC
CCAGTACCTGGTTGTGCTCAATCAGAAGTTCACAGACTGTTTCGTGTTAGTGTTTCTGGA
TTCCCACTTGGGAAAGACGTCTCTGACGGTAGTTTTCCGAGAGCCCTTCCCAGTACAGCC
GCAGGACAGCGAGAGCCCCCCCGCCCAGCTGGTCTCCACCTACCACCACCTGGAGTCGGT
CATCAACACAGCCTGCTTCACCCTCTGGACCCGCCTCCTCTGAGGGATGGACCACCGAGC
GTCCTCTGTAATTGCCCACCTGAAGCAGGACTGACCCGCCCTTCTGGGCACCAGGGCAAG
AGCAGACCCTGAGGAACGCCCAAGGTTTTATGACTCTGACTTGGGAGGCTGGTAGCAAGA
GCCACCCTCCCTAAACACGTGCAGCCACTGACCAGCCAGGGCACCAAAGGGTCCAGTGCT
CTGCCTGAGGTGCCCGTGTCTCTTCCGGCTCTGGGCCCTTCCAGGAGCCGCCTCCTTCCT
GCTCTCCTGGGGGAGTCTGGGAATTCTTCGCATCAGGTGGCACGTAGGCCCTTTAGAGCT
CCTCTTCCATGGATCCTGCCTCCAAGTCTTGGATGGCTGTCAGCCACCCCCATAGTGAGT
CCGCTGGTCTTCACTTCCCACTGGGACTTCACTGCCGGACGTGGCCATTGAGCTAAGACA
CCCTGGTTCCAATCCCAGCTCTGCCATCGAAGCACCTGTGGCCCTTTGCTCTCGACCCTT
GGTTTGTCATCCATACATGAGGAGGCGGACTCAGAAGCTCGCCCATCTCCAGAGCAACCC
TGGCGCAGATGGGAGGACTTGAATCTGAGCTGCACGTCCCTTCTTTGCAGGAGGGAAGCG
ACCCCAAGAAACTGCAAAGTGAGACACTGTGTGTCCCTGTCCCCCCCTCCAGTAACATAC
ACACACACACAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTTCTCCTAAGCCGCTTTCCCCAGAGCTGTCGCCACTTCCAGAGCCCAGACTTGGGAAC
CCAGTACCTGGTTGTGCTCAATCAGAAGTTCACAGACTGTTTCGTGTTAGTGTTTCTGGA
TTCCCACTTGGGAAAGACGTCTCTGACGGTAGTTTTCCGAGAGCCCTTCCCAGTACAGCC
GCAGGACAGCGAGAGCCCCCCCGCCCAGCTGGTCTCCACCTACCACCACCTGGAGTCGGT
CATCAACACAGCCTGCTTCACCCTCTGGACCCGCCTCCTCTGAGGGATGGACCACCGAGC
GTCCTCTGTAATTGCCCACCTGAAGCAGGACTGACCCGCCCTTCTGGGCACCAGGGCAAG
AGCAGACCCTGAGGAACGCCCAAGGTTTTATGACTCTGACTTGGGAGGCTGGTAGCAAGA
GCCACCCTCCCTAAACACGTGCAGCCACTGACCAGCCAGGGCACCAAAGGGTCCAGTGCT
CTGCCTGAGGTGCCCGTGTCTCTTCCGGCTCTGGGCCCTTCCAGGAGCCGCCTCCTTCCT
GCTCTCCTGGGGGAGTCTGGGAATTCTTCGCATCAGGTGGCACGTAGGCCCTTTAGAGCT
CCTCTTCCATGGATCCTGCCTCCAAGTCTTGGATGGCTGTCAGCCACCCCCATAGTGAGT
CCGCTGGTCTTCACTTCCCACTGGGACTTCACTGCCGGACGTGGCCATTGAGCTAAGACA
CCCTGGTTCCAATCCCAGCTCTGCCATCGAAGCACCTGTGGCCCTTTGCTCTCGACCCTT
GGTTTGTCATCCATACATGAGGAGGCGGACTCAGAAGCTCGCCCATCTCCAGAGCAACCC
TGGCGCAGATGGGAGGACTTGAATCTGAGCTGCACGTCCCTTCTTTGCAGGAGGGAAGCG
ACCCCAAGAAACTGCAAAGTGAGACACTGTGTGTCCCTGTCCCCCCCTCCAGTAACATAC
ACACACACACAC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|47201854|emb|CAF88986.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|47201854|emb|CAF88986.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               456-574, + strand, RNAz p=0.997834

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               456-574, + strand, RNAz p=0.997834

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of AK126972, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of AK126972, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               139-962, gnl|bosTau2|chr3 (71806242-71807060)
               

               
               139-962, gnl|Hg17|chr1 (43585100-43585912)
               

               
               139-962, gnl|Mm7|chr4 (117739911-117739189)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               139-962, gnl|bosTau2|chr3 (71806242-71807060)
               

               
               139-962, gnl|Hg17|chr1 (43585100-43585912)
               

               
               139-962, gnl|Mm7|chr4 (117739911-117739189)

Expressed library(ies): 9 entry(ies)

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Expressed library(ies): 9 entry(ies)

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               fli (0.202881)
               

               
               fcc (0.197785)
               

               
               lnt (0.142308)
               

               
               cst (0.140036)
               

               
               hlv (0.139256)
               

               
               pla (0.133672)
               

               
               ute (0.132784)
               

               
               cov (0.132153)
               

               
               eru (0.120048)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fli (0.202881)
               

               
               fcc (0.197785)
               

               
               lnt (0.142308)
               

               
               cst (0.140036)
               

               
               hlv (0.139256)
               

               
               pla (0.133672)
               

               
               ute (0.132784)
               

               
               cov (0.132153)
               

               
               eru (0.120048)

	139-962, gnl\|bosTau2\|chr3 (71806242-71807060)
	139-962, gnl\|Hg17\|chr1 (43585100-43585912)
	139-962, gnl\|Mm7\|chr4 (117739911-117739189)

	fli (0.202881)
	fcc (0.197785)
	lnt (0.142308)
	cst (0.140036)
	hlv (0.139256)
	pla (0.133672)
	ute (0.132784)
	cov (0.132153)
	eru (0.120048)