Non-Coding RNA Search

Ss1.1-Pig4-TMW8065O04.3

Sequence:


               
               GAAACATGCTTCAAAGAACTTAATGTTTTTGAGCAATGTTAAGATGCTTTGGACAGCCCC
TGACCCTAGCATACATTACCTCTTATTTGAGAGGTTTCTTTTAAAAACAAAAATTGGCAG
CTGTCCTTTGACTTTTTTCTTAGAGGATATGCAACTTGGATCCAATGACCTGGTTTAATA
TGTTTTTGCAACGTATCCTACTCAGAACTGTCCAGGTTTGAAGCCAAGCCCTGATAATGA
AGGATGCAGTGGTGTGATTTCTAGTCCTCCCTTTTTTGGTTTCTATAGACAGATGTGTTT
TTGAATGTTATATGCTTGCTGTAGTGAAAAGGGGACCTCTTGAGGTGTAATTTTGCACTT
TCGGAACTTATTTTCTTGGAAAACAATATTTATAGACTTTAAAGCCCATTTTCCATTCTA
ATCTAAATTATGTGTACCTATCTTAAAACTTTGGGCTTTTTTTTCTGCCCCAACATTCTG
GAATTAATGGGGTTTTATGTTTTCTTTTTTTATTTTAGTTAATTTGGCCCTTCTACTTTA
AGGCTAAGAAAATAACCTTGTATATACTAATAACTTAAAGTACAGTATCTTGTGTCACTT
TTTCTTTCTAAAAATGACTTTGGTTTAAAATGTATGGTGGGTTTTTATTTCTGTAAATAA
ATACCCTACCTGGGATACTTCCAAGGGCTGCCACAAAAACTACATGGGCGGTATTTTCTG
CTACTTTGGGAGAGCTGCATCTTTCTGCCAAATCTGATGTATTTAATTTCTGTGCAAACC
GTTTTCTGGAGAGGGTTCTGTATATGTTATTGTAATTCCCACTTCAGCAGCTTTTTGTGT
CTTCAACAGGTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAACATGCTTCAAAGAACTTAATGTTTTTGAGCAATGTTAAGATGCTTTGGACAGCCCC
TGACCCTAGCATACATTACCTCTTATTTGAGAGGTTTCTTTTAAAAACAAAAATTGGCAG
CTGTCCTTTGACTTTTTTCTTAGAGGATATGCAACTTGGATCCAATGACCTGGTTTAATA
TGTTTTTGCAACGTATCCTACTCAGAACTGTCCAGGTTTGAAGCCAAGCCCTGATAATGA
AGGATGCAGTGGTGTGATTTCTAGTCCTCCCTTTTTTGGTTTCTATAGACAGATGTGTTT
TTGAATGTTATATGCTTGCTGTAGTGAAAAGGGGACCTCTTGAGGTGTAATTTTGCACTT
TCGGAACTTATTTTCTTGGAAAACAATATTTATAGACTTTAAAGCCCATTTTCCATTCTA
ATCTAAATTATGTGTACCTATCTTAAAACTTTGGGCTTTTTTTTCTGCCCCAACATTCTG
GAATTAATGGGGTTTTATGTTTTCTTTTTTTATTTTAGTTAATTTGGCCCTTCTACTTTA
AGGCTAAGAAAATAACCTTGTATATACTAATAACTTAAAGTACAGTATCTTGTGTCACTT
TTTCTTTCTAAAAATGACTTTGGTTTAAAATGTATGGTGGGTTTTTATTTCTGTAAATAA
ATACCCTACCTGGGATACTTCCAAGGGCTGCCACAAAAACTACATGGGCGGTATTTTCTG
CTACTTTGGGAGAGCTGCATCTTTCTGCCAAATCTGATGTATTTAATTTCTGTGCAAACC
GTTTTCTGGAGAGGGTTCTGTATATGTTATTGTAATTCCCACTTCAGCAGCTTTTTGTGT
CTTCAACAGGTA

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               2-156, - strand, RNAz p=0.655352
               

               
               395-509, - strand, RNAz p=0.950623
               

               
               585-697, + strand, RNAz p=0.988764

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               2-156, - strand, RNAz p=0.655352
               

               
               395-509, - strand, RNAz p=0.950623
               

               
               585-697, + strand, RNAz p=0.988764

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_032833, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_032833, +

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               2-852, gnl|bosTau2|chr16 (1991055-1991897)
               

               
               2-852, gnl|Hg17|chr1 (201106917-201106071)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-852, gnl|bosTau2|chr16 (1991055-1991897)
               

               
               2-852, gnl|Hg17|chr1 (201106917-201106071)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cag (0.151194)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cag (0.151194)

	2-156, - strand, RNAz p=0.655352
	395-509, - strand, RNAz p=0.950623
	585-697, + strand, RNAz p=0.988764

	2-852, gnl\|bosTau2\|chr16 (1991055-1991897)
	2-852, gnl\|Hg17\|chr1 (201106917-201106071)