Ss1.1-Pig4-TMW8065O05.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGGAGCCGGAGTCGGCAGGCGTGGAGTGTAGGCCGGGCGGCGGCGCCGGGCGGAGGCGGT GAGGCAGCTACCTTGGTCAGTGACCACCTTGCAGTATGTTGAGTCAAGTCTGCCGCTCTG GGTTCCAGTCCTTCACCCAGCATCTCCTGCCCTGGGTCCAATCCACCACACTCTCCAGAT CTGGTCACATCCAGCCTTCGGCCATCAGACATGTTCGTTCTTGGAGCAACATTCCCTTTA TCACTGTTCCCCTCAGTCGTACACATGGCAAGTCTTTTGCCCACCGCAGTGAGCTGAAGC ATGCCAAGAGAATCGTGGTGAAACTCGGAAGTGCCGTGGTGACCCGAGGGGACGAATGTG GCCTGGCACTGGGGCGCCTGGCATCTATTGTTGAGCAGGTGTCAGTGCTGCAGAATCAAG GACGAGAGATGATGCTGGTGACCAGTGGAGCCGTAGCCTTTGGCAAGCAACGCTTACGCC ATGAGATCCTGCTGTCTCAGAGTGTGCGGCAGGCCCTACACTCAGGGCAGAACCAGCTGA AGGAGATGGCAATTCCAGTCTTAGAAGCCCGAGCCTGTGCAGCTGCTGGACAGAGTGGGC TGATGGCCTTATATGAAGCCATGTTTACCCAGTATAGCATCTGTGCTGCGCAGATTTTGG TGACCAATTTGGATTTCCACGATGAGCAGAAGCGCCGGAACCTCAATGGGACACTTCATG AGCTCCTCCGAATGAACATTGTCCCCATCGTCAACACAAATGATGCTGTCGTCCCCCCAG CAGAGCCCAATAGTGATCTCCAGGGGGTAAATGTTATTAGTGTTAAGGATAATGATAGCC TGGCTGCCCGTCTAGCCGTGGAAATGAAAACTGACCTTTTGATTGTTCTTTCAGATGTCG AAGGCCTCTTTGACAGCCCCCCAGGGTCAGATGATGCAAAGCTCATTGATATATTTTATC CTGGAGATCAGCAGTCTGTAACATTTGGAACCAAGTCCAGAGTGGGAATGGGTGGCATGG AAGCCAAGGTGAAAGCAGCCCTCTGGGCTTTGCAAGGTGGCACGTCTGTGGTCATTGCCA ATGGGACCCACCCAAAGGTGTCTGGGCACGTCATCACAGACATCGTGGAGGGAAAGAAGG TTGGCACCTTCTTTTCTGAAGTAAAGCCTGCAGGCCCTACCGTGGAACAGCAAGGGGAAA TGGCTCGATCAGGAGGAAGGATGTTGGCCACTTTGGAACCTGAGCAGAGAGCAGAGATTA TCTATCATCTGG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGGAGCCGGAGTCGGCAGGCGTGGAGTGTAGGCCGGGCGGCGGCGCCGGGCGGAGGCGGT GAGGCAGCTACCTTGGTCAGTGACCACCTTGCAGTATGTTGAGTCAAGTCTGCCGCTCTG GGTTCCAGTCCTTCACCCAGCATCTCCTGCCCTGGGTCCAATCCACCACACTCTCCAGAT CTGGTCACATCCAGCCTTCGGCCATCAGACATGTTCGTTCTTGGAGCAACATTCCCTTTA TCACTGTTCCCCTCAGTCGTACACATGGCAAGTCTTTTGCCCACCGCAGTGAGCTGAAGC ATGCCAAGAGAATCGTGGTGAAACTCGGAAGTGCCGTGGTGACCCGAGGGGACGAATGTG GCCTGGCACTGGGGCGCCTGGCATCTATTGTTGAGCAGGTGTCAGTGCTGCAGAATCAAG GACGAGAGATGATGCTGGTGACCAGTGGAGCCGTAGCCTTTGGCAAGCAACGCTTACGCC ATGAGATCCTGCTGTCTCAGAGTGTGCGGCAGGCCCTACACTCAGGGCAGAACCAGCTGA AGGAGATGGCAATTCCAGTCTTAGAAGCCCGAGCCTGTGCAGCTGCTGGACAGAGTGGGC TGATGGCCTTATATGAAGCCATGTTTACCCAGTATAGCATCTGTGCTGCGCAGATTTTGG TGACCAATTTGGATTTCCACGATGAGCAGAAGCGCCGGAACCTCAATGGGACACTTCATG AGCTCCTCCGAATGAACATTGTCCCCATCGTCAACACAAATGATGCTGTCGTCCCCCCAG CAGAGCCCAATAGTGATCTCCAGGGGGTAAATGTTATTAGTGTTAAGGATAATGATAGCC TGGCTGCCCGTCTAGCCGTGGAAATGAAAACTGACCTTTTGATTGTTCTTTCAGATGTCG AAGGCCTCTTTGACAGCCCCCCAGGGTCAGATGATGCAAAGCTCATTGATATATTTTATC CTGGAGATCAGCAGTCTGTAACATTTGGAACCAAGTCCAGAGTGGGAATGGGTGGCATGG AAGCCAAGGTGAAAGCAGCCCTCTGGGCTTTGCAAGGTGGCACGTCTGTGGTCATTGCCA ATGGGACCCACCCAAAGGTGTCTGGGCACGTCATCACAGACATCGTGGAGGGAAAGAAGG TTGGCACCTTCTTTTCTGAAGTAAAGCCTGCAGGCCCTACCGTGGAACAGCAAGGGGAAA TGGCTCGATCAGGAGGAAGGATGTTGGCCACTTTGGAACCTGAGCAGAGAGCAGAGATTA TCTATCATCTGG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1057-1174, + strand, RNAz p=0.958749 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1057-1174, + strand, RNAz p=0.958749 |
| Aligned organism(s): 38 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
| 183-400, gnl|bosTau2|chr26 (6679477-6679694) | |
| 183-400, gnl|canFam2|chr28 (12133658-12133810) | |
| 183-400, gnl|danRer3|chr12 (28457394-28457244) | |
| 183-400, gnl|echTel1|scaffold_250515 (4695-4543) | |
| 183-400, gnl|fr1|chrUn (261722735-261722884) | |
| 183-400, gnl|galGal2|chr6 (33847440-33847288) | |
| 183-400, gnl|hg17|chr10 (97392734-97392886) | |
| 183-400, gnl|Hg17|chr10 (97392954-97392737) | |
| 183-400, gnl|loxAfr1|scaffold_74965 (5000-5152) | |
| 183-400, gnl|mm7|chr19 (40473645-40473797) | |
| 183-400, gnl|Mm7|chr19 (40473865-40473648) | |
| 183-400, gnl|monDom2|scaffold_14 (27194606-27194454) | |
| 183-400, gnl|panTro1|chr8 (99078563-99078715) | |
| 183-400, gnl|rheMac2|chr9 (95179823-95179975) | |
| 183-400, gnl|rn3|chr1 (245819264-245819416) | |
| 183-400, gnl|tetNig1|chr17 (1438932-1439080) | |
| 183-400, gnl|xenTro1|scaffold_47 (3093426-3093574) | |
| 652-814, gnl|bosTau2|chr26 (6688031-6688193) | |
| 652-814, gnl|Hg17|chr10 (97383398-97383236) | |
| 652-814, gnl|Mm7|chr19 (40468159-40467997) | |
| 1027-1174, gnl|bosTau2|chr26 (6692765-6692912) | |
| 1027-1174, gnl|canFam2|chr28 (12117259-12117412) | |
| 1027-1174, gnl|danRer3|chr12 (28462695-28462546) | |
| 1027-1174, gnl|dasNov1|scaffold_1289 (58635-58774) | |
| 1027-1174, gnl|fr1|chrUn (261720419-261720571) | |
| 1027-1174, gnl|galGal2|chr6 (33860579-33860426) | |
| 1027-1174, gnl|hg17|chr10 (97377183-97377336) | |
| 1027-1174, gnl|Hg17|chr10 (97377335-97377188) | |
| 1027-1174, gnl|loxAfr1|scaffold_18984 (34432-34585) | |
| 1027-1174, gnl|mm7|chr19 (40462815-40462968) | |
| 1027-1174, gnl|Mm7|chr19 (40462967-40462820) | |
| 1027-1174, gnl|monDom2|scaffold_14 (27212612-27212459) | |
| 1027-1174, gnl|oryCun1|scaffold_205839 (172887-172734) | |
| 1027-1174, gnl|panTro1|chr8 (99060910-99061064) | |
| 1027-1174, gnl|rheMac2|chr9 (95164239-95164392) | |
| 1027-1174, gnl|rn3|chr1 (245809842-245809995) | |
| 1027-1174, gnl|tetNig1|chr17 (1437282-1437431) | |
| 1027-1174, gnl|xenTro1|scaffold_47 (3084213-3084366) |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 183-400, gnl|bosTau2|chr26 (6679477-6679694) | |
| 183-400, gnl|canFam2|chr28 (12133658-12133810) | |
| 183-400, gnl|danRer3|chr12 (28457394-28457244) | |
| 183-400, gnl|echTel1|scaffold_250515 (4695-4543) | |
| 183-400, gnl|fr1|chrUn (261722735-261722884) | |
| 183-400, gnl|galGal2|chr6 (33847440-33847288) | |
| 183-400, gnl|hg17|chr10 (97392734-97392886) | |
| 183-400, gnl|Hg17|chr10 (97392954-97392737) | |
| 183-400, gnl|loxAfr1|scaffold_74965 (5000-5152) | |
| 183-400, gnl|mm7|chr19 (40473645-40473797) | |
| 183-400, gnl|Mm7|chr19 (40473865-40473648) | |
| 183-400, gnl|monDom2|scaffold_14 (27194606-27194454) | |
| 183-400, gnl|panTro1|chr8 (99078563-99078715) | |
| 183-400, gnl|rheMac2|chr9 (95179823-95179975) | |
| 183-400, gnl|rn3|chr1 (245819264-245819416) | |
| 183-400, gnl|tetNig1|chr17 (1438932-1439080) | |
| 183-400, gnl|xenTro1|scaffold_47 (3093426-3093574) | |
| 652-814, gnl|bosTau2|chr26 (6688031-6688193) | |
| 652-814, gnl|Hg17|chr10 (97383398-97383236) | |
| 652-814, gnl|Mm7|chr19 (40468159-40467997) | |
| 1027-1174, gnl|bosTau2|chr26 (6692765-6692912) | |
| 1027-1174, gnl|canFam2|chr28 (12117259-12117412) | |
| 1027-1174, gnl|danRer3|chr12 (28462695-28462546) | |
| 1027-1174, gnl|dasNov1|scaffold_1289 (58635-58774) | |
| 1027-1174, gnl|fr1|chrUn (261720419-261720571) | |
| 1027-1174, gnl|galGal2|chr6 (33860579-33860426) | |
| 1027-1174, gnl|hg17|chr10 (97377183-97377336) | |
| 1027-1174, gnl|Hg17|chr10 (97377335-97377188) | |
| 1027-1174, gnl|loxAfr1|scaffold_18984 (34432-34585) | |
| 1027-1174, gnl|mm7|chr19 (40462815-40462968) | |
| 1027-1174, gnl|Mm7|chr19 (40462967-40462820) | |
| 1027-1174, gnl|monDom2|scaffold_14 (27212612-27212459) | |
| 1027-1174, gnl|oryCun1|scaffold_205839 (172887-172734) | |
| 1027-1174, gnl|panTro1|chr8 (99060910-99061064) | |
| 1027-1174, gnl|rheMac2|chr9 (95164239-95164392) | |
| 1027-1174, gnl|rn3|chr1 (245809842-245809995) | |
| 1027-1174, gnl|tetNig1|chr17 (1437282-1437431) | |
| 1027-1174, gnl|xenTro1|scaffold_47 (3084213-3084366) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| mas (0.210305) | |
| ebs (0.118301) |