Ss1.1-Pig4-TMW8065O08.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ACTGCGGCCCTCTACGGACCTTACTGCAACGATGAAACCTGATGAAACTCCTCTCTTTGA CCCAAGTCTACTCAAAGAAGTGGACTGGAGTCAGAATACAGCTACATTTTCTCCAGCCAT TTCCCCAACACATCCTGGAGAAGGTTTGGTTTTGAGGCCTCTTTGTACTGCTGATTTAAA TAGAGGTTTTTTTAAGGTACTAGGTCAGCTGACAGAGACTGGAGTTGTTAACCCGGAACA ATTTATGAAATCTTTTGAGCACATGAAGAAATCTGGGGACTATTATGTTACTGTTGTAGA AGATGTGACTTTAGGACAGATAGTTGCTACAGCAACTCTGATAATAGAACATAAATTCAT CCATTCTTGTGCTAAGAGAGGAAGAGTAGAAGATGTTGTTGTTAGTGATGAATGCAGAGG AAAGCAGCTTGGCAAATTGTTATTATCAACCCTTACTTTGCTAAGCAAGAAACTGAACTG TTATAAGATTACCCTTGAATGTCTACCACAAAATGTTGGCTTCTACAAAAAGTTTGGATA TACAGTATCTGAAGAAAACTACATGTGTAGGAGGTTTCTAAAGTAGAAATCTTTTAAGAA AGACATTTGTTAAAGGAGCTAGTTTAACAAGGTTATATATTCTCTTCCTGGGGTATAAAA TATTTTGTTGCTGCCAACTCAGTGACCTCCATAAATACTGGATTGAGAAAAATATTGTAA TACACAAGTATAATGACAGATTACTTTGGGCTGGTGGGACATGCTGTGAGTTTAGATTAC AAATGCATATTATAAAGGGGATGATTTTTAACCAAAGGAGTATATTTTTAACTTGAATCT TTTCTTGCATTGTATTTTTCTAAAGTTTGGCTTCATTTCTTAGTAGTCAGAGTATAGGTA GTAAGGAGTTATGTGTCTGCTATCTGTACTGCTTGTTAAAAATAACATACAATGAATAAG GCTATTTATTATCACATTCATAAAATTAATACTTTTGTTTCAAAGAAATATATTTAAATA CCAATTAGGGCTATATCATTTCACATATACTACATGAAATTGGATGTTAGATATATTATA ACTAATGTAGGACAGACCAACATTTGTCAATCTTAGTATCATACCGACAAACAACCTGGT CAGCCTTTAAAAGAAGTAAAATAAAAATTAACATAAAAAATGTGACGATTTAAATGTACA TCTGAAAGCTGATGTAAATCTAGTGTAGCTAAAGTACCATCTGTCTCGTACCATGTGAAA AACAATAATTACTCATTTGTTTAAAATATCTAAGAAGTACTTTTTAACAGTAAATTAGTA AATTCTGGCACATTATGTATTTCTAACCTGATTTCTCATCTTCCCATGGGTGTGTGAAGC CCCTCTTCTGAGTAACATTTTTATGAAGAAGAGATTACAAAATTGAGTGGAATATTTTAA AATGTATCATACTACTTTTATTACATTCTAAAAATGTTGATGGAAGCTTTTCTATTTAAT GTGATTATAATGGTACTATTATTCTGGTCACTCCTGTTTGATTTTATTTATTTTAATTAT TTTTTAAGTTGAAATAAGAATTAGACACTTTATTAATGGTTCTAATCTTTTGCATTCCAT GTTACATTAAACCTGTTCATGTAATAGTCTTTTGTTAGAACCCTAATGTTGTCTGTGTTT TTCTTGAGTTGTCTATTGAACTGTTCAAGTCATGGTTCATAAAATTGTAGTTTTGTGTAC TCTTTGTGAAAGGAGCTTAGAGGAGTTGCCTCAAGGCTCAGAGAGTTAAGGATCCAGTGT TGTCACTACTGAGGCTATGGTTACAGCTGTGACACAGGATCAGTAACTGGCCCAGGGACC TTCTGTATGCTGCAGACACAGCCAAAAACCAAAGCAAAATAAAATGGAACTAGAAAAAAA AAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ACTGCGGCCCTCTACGGACCTTACTGCAACGATGAAACCTGATGAAACTCCTCTCTTTGA CCCAAGTCTACTCAAAGAAGTGGACTGGAGTCAGAATACAGCTACATTTTCTCCAGCCAT TTCCCCAACACATCCTGGAGAAGGTTTGGTTTTGAGGCCTCTTTGTACTGCTGATTTAAA TAGAGGTTTTTTTAAGGTACTAGGTCAGCTGACAGAGACTGGAGTTGTTAACCCGGAACA ATTTATGAAATCTTTTGAGCACATGAAGAAATCTGGGGACTATTATGTTACTGTTGTAGA AGATGTGACTTTAGGACAGATAGTTGCTACAGCAACTCTGATAATAGAACATAAATTCAT CCATTCTTGTGCTAAGAGAGGAAGAGTAGAAGATGTTGTTGTTAGTGATGAATGCAGAGG AAAGCAGCTTGGCAAATTGTTATTATCAACCCTTACTTTGCTAAGCAAGAAACTGAACTG TTATAAGATTACCCTTGAATGTCTACCACAAAATGTTGGCTTCTACAAAAAGTTTGGATA TACAGTATCTGAAGAAAACTACATGTGTAGGAGGTTTCTAAAGTAGAAATCTTTTAAGAA AGACATTTGTTAAAGGAGCTAGTTTAACAAGGTTATATATTCTCTTCCTGGGGTATAAAA TATTTTGTTGCTGCCAACTCAGTGACCTCCATAAATACTGGATTGAGAAAAATATTGTAA TACACAAGTATAATGACAGATTACTTTGGGCTGGTGGGACATGCTGTGAGTTTAGATTAC AAATGCATATTATAAAGGGGATGATTTTTAACCAAAGGAGTATATTTTTAACTTGAATCT TTTCTTGCATTGTATTTTTCTAAAGTTTGGCTTCATTTCTTAGTAGTCAGAGTATAGGTA GTAAGGAGTTATGTGTCTGCTATCTGTACTGCTTGTTAAAAATAACATACAATGAATAAG GCTATTTATTATCACATTCATAAAATTAATACTTTTGTTTCAAAGAAATATATTTAAATA CCAATTAGGGCTATATCATTTCACATATACTACATGAAATTGGATGTTAGATATATTATA ACTAATGTAGGACAGACCAACATTTGTCAATCTTAGTATCATACCGACAAACAACCTGGT CAGCCTTTAAAAGAAGTAAAATAAAAATTAACATAAAAAATGTGACGATTTAAATGTACA TCTGAAAGCTGATGTAAATCTAGTGTAGCTAAAGTACCATCTGTCTCGTACCATGTGAAA AACAATAATTACTCATTTGTTTAAAATATCTAAGAAGTACTTTTTAACAGTAAATTAGTA AATTCTGGCACATTATGTATTTCTAACCTGATTTCTCATCTTCCCATGGGTGTGTGAAGC CCCTCTTCTGAGTAACATTTTTATGAAGAAGAGATTACAAAATTGAGTGGAATATTTTAA AATGTATCATACTACTTTTATTACATTCTAAAAATGTTGATGGAAGCTTTTCTATTTAAT GTGATTATAATGGTACTATTATTCTGGTCACTCCTGTTTGATTTTATTTATTTTAATTAT TTTTTAAGTTGAAATAAGAATTAGACACTTTATTAATGGTTCTAATCTTTTGCATTCCAT GTTACATTAAACCTGTTCATGTAATAGTCTTTTGTTAGAACCCTAATGTTGTCTGTGTTT TTCTTGAGTTGTCTATTGAACTGTTCAAGTCATGGTTCATAAAATTGTAGTTTTGTGTAC TCTTTGTGAAAGGAGCTTAGAGGAGTTGCCTCAAGGCTCAGAGAGTTAAGGATCCAGTGT TGTCACTACTGAGGCTATGGTTACAGCTGTGACACAGGATCAGTAACTGGCCCAGGGACC TTCTGTATGCTGCAGACACAGCCAAAAACCAAAGCAAAATAAAATGGAACTAGAAAAAAA AAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 17-187, + strand, RNAz p=0.99092 | |
| 259-376, + strand, RNAz p=0.699854 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 17-187, + strand, RNAz p=0.99092 | |
| 259-376, + strand, RNAz p=0.699854 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of NM_198066, + |
| Aligned organism(s): 51 entry(ies) | More info |
| Aligned organism(s): 51 entry(ies) | Help | Less info |
| 17-187, gnl|bosTau2|chr10 (4729539-4729709) | |
| 17-187, gnl|canFam2|chr8 (32004885-32005032) | |
| 17-187, gnl|danRer3|chrUn (7028888-7028741) | |
| 17-187, gnl|dasNov1|scaffold_11739 (75419-75275) | |
| 17-187, gnl|echTel1|scaffold_214302 (2524-2672) | |
| 17-187, gnl|fr1|chrUn (251256934-251257081) | |
| 17-187, gnl|galGal2|chr5 (54920783-54920929) | |
| 17-187, gnl|hg17|chr14 (52320963-52321110) | |
| 17-187, gnl|Hg17|chr14 (52321133-52320963) | |
| 17-187, gnl|loxAfr1|scaffold_5686 (33272-33419) | |
| 17-187, gnl|mm7|chr14 (40703062-40703209) | |
| 17-187, gnl|Mm7|chr14 (40703232-40703062) | |
| 17-187, gnl|monDom2|scaffold_6 (101287489-101287636) | |
| 17-187, gnl|oryCun1|scaffold_197954 (10510-10657) | |
| 17-187, gnl|panTro1|chr15 (51773510-51773657) | |
| 17-187, gnl|rheMac2|chr7 (115798848-115798995) | |
| 17-187, gnl|rn3|chr15 (21280223-21280370) | |
| 17-187, gnl|tetNig1|chr5 (2706325-2706178) | |
| 249-376, gnl|bosTau2|chr10 (4731912-4732039) | |
| 249-376, gnl|canFam2|chr8 (32001850-32001998) | |
| 249-376, gnl|canFam2|chr8 (32001995-32001870) | |
| 249-376, gnl|danRer3|chrUn (7030327-7030191) | |
| 249-376, gnl|danRer3|chrUn (7030191-7030319) | |
| 249-376, gnl|dasNov1|scaffold_50444 (1311-1441) | |
| 249-376, gnl|dasNov1|scaffold_50444 (1438-1313) | |
| 249-376, gnl|fr1|chrUn (251256481-251256620) | |
| 249-376, gnl|fr1|chrUn (251256612-251256492) | |
| 249-376, gnl|galGal2|chr5 (54919058-54919197) | |
| 249-376, gnl|galGal2|chr5 (54919194-54919069) | |
| 249-376, gnl|hg17|chr14 (52318244-52318383) | |
| 249-376, gnl|Hg17|chr14 (52318379-52318252) | |
| 249-376, gnl|hg17|chr2 (190512747-190512869) | |
| 249-376, gnl|loxAfr1|scaffold_5686 (29054-29202) | |
| 249-376, gnl|loxAfr1|scaffold_5686 (29199-29074) | |
| 249-376, gnl|mm7|chr14 (40700022-40700170) | |
| 249-376, gnl|Mm7|chr14 (40700166-40700039) | |
| 249-376, gnl|mm7|chr18 (86592256-86592131) | |
| 249-376, gnl|monDom2|scaffold_150 (191069-191192) | |
| 249-376, gnl|monDom2|scaffold_6 (101285810-101285959) | |
| 249-376, gnl|oryCun1|scaffold_173139 (49483-49359) | |
| 249-376, gnl|oryCun1|scaffold_173139 (49359-49481) | |
| 249-376, gnl|panTro1|chr13 (80378388-80378510) | |
| 249-376, gnl|panTro1|chr15 (51770782-51770921) | |
| 249-376, gnl|rheMac2|chr7 (115795792-115795931) | |
| 249-376, gnl|rheMac2|chr7 (115795923-115795803) | |
| 249-376, gnl|rn3|chr15 (21276929-21277085) | |
| 249-376, gnl|rn3|chr4 (38840139-38840015) | |
| 249-376, gnl|tetNig1|chr5 (2706765-2706632) | |
| 249-376, gnl|tetNig1|chr5 (2706640-2706760) | |
| 439-1761, gnl|bosTau2|chr10 (4735468-4736769) | |
| 439-1761, gnl|Hg17|chr14 (52314926-52313614) |
| Aligned organism(s): 51 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 17-187, gnl|bosTau2|chr10 (4729539-4729709) | |
| 17-187, gnl|canFam2|chr8 (32004885-32005032) | |
| 17-187, gnl|danRer3|chrUn (7028888-7028741) | |
| 17-187, gnl|dasNov1|scaffold_11739 (75419-75275) | |
| 17-187, gnl|echTel1|scaffold_214302 (2524-2672) | |
| 17-187, gnl|fr1|chrUn (251256934-251257081) | |
| 17-187, gnl|galGal2|chr5 (54920783-54920929) | |
| 17-187, gnl|hg17|chr14 (52320963-52321110) | |
| 17-187, gnl|Hg17|chr14 (52321133-52320963) | |
| 17-187, gnl|loxAfr1|scaffold_5686 (33272-33419) | |
| 17-187, gnl|mm7|chr14 (40703062-40703209) | |
| 17-187, gnl|Mm7|chr14 (40703232-40703062) | |
| 17-187, gnl|monDom2|scaffold_6 (101287489-101287636) | |
| 17-187, gnl|oryCun1|scaffold_197954 (10510-10657) | |
| 17-187, gnl|panTro1|chr15 (51773510-51773657) | |
| 17-187, gnl|rheMac2|chr7 (115798848-115798995) | |
| 17-187, gnl|rn3|chr15 (21280223-21280370) | |
| 17-187, gnl|tetNig1|chr5 (2706325-2706178) | |
| 249-376, gnl|bosTau2|chr10 (4731912-4732039) | |
| 249-376, gnl|canFam2|chr8 (32001850-32001998) | |
| 249-376, gnl|canFam2|chr8 (32001995-32001870) | |
| 249-376, gnl|danRer3|chrUn (7030327-7030191) | |
| 249-376, gnl|danRer3|chrUn (7030191-7030319) | |
| 249-376, gnl|dasNov1|scaffold_50444 (1311-1441) | |
| 249-376, gnl|dasNov1|scaffold_50444 (1438-1313) | |
| 249-376, gnl|fr1|chrUn (251256481-251256620) | |
| 249-376, gnl|fr1|chrUn (251256612-251256492) | |
| 249-376, gnl|galGal2|chr5 (54919058-54919197) | |
| 249-376, gnl|galGal2|chr5 (54919194-54919069) | |
| 249-376, gnl|hg17|chr14 (52318244-52318383) | |
| 249-376, gnl|Hg17|chr14 (52318379-52318252) | |
| 249-376, gnl|hg17|chr2 (190512747-190512869) | |
| 249-376, gnl|loxAfr1|scaffold_5686 (29054-29202) | |
| 249-376, gnl|loxAfr1|scaffold_5686 (29199-29074) | |
| 249-376, gnl|mm7|chr14 (40700022-40700170) | |
| 249-376, gnl|Mm7|chr14 (40700166-40700039) | |
| 249-376, gnl|mm7|chr18 (86592256-86592131) | |
| 249-376, gnl|monDom2|scaffold_150 (191069-191192) | |
| 249-376, gnl|monDom2|scaffold_6 (101285810-101285959) | |
| 249-376, gnl|oryCun1|scaffold_173139 (49483-49359) | |
| 249-376, gnl|oryCun1|scaffold_173139 (49359-49481) | |
| 249-376, gnl|panTro1|chr13 (80378388-80378510) | |
| 249-376, gnl|panTro1|chr15 (51770782-51770921) | |
| 249-376, gnl|rheMac2|chr7 (115795792-115795931) | |
| 249-376, gnl|rheMac2|chr7 (115795923-115795803) | |
| 249-376, gnl|rn3|chr15 (21276929-21277085) | |
| 249-376, gnl|rn3|chr4 (38840139-38840015) | |
| 249-376, gnl|tetNig1|chr5 (2706765-2706632) | |
| 249-376, gnl|tetNig1|chr5 (2706640-2706760) | |
| 439-1761, gnl|bosTau2|chr10 (4735468-4736769) | |
| 439-1761, gnl|Hg17|chr14 (52314926-52313614) |
| Expressed library(ies): 22 entry(ies) | More info |
| Expressed library(ies): 22 entry(ies) | Help | Less info |
| pro (0.512033) | |
| cbe (0.478469) | |
| ret (0.3862) | |
| fco (0.314416) | |
| lin (0.291206) | |
| nmm (0.265604) | |
| kid (0.259471) | |
| mgp (0.230681) | |
| fli (0.202881) | |
| fhi (0.169578) | |
| lun (0.150489) | |
| bfe (0.149858) | |
| fat (0.147427) | |
| pty (0.142714) | |
| ste (0.135208) | |
| lyg (0.133103) | |
| sug (0.127291) | |
| tra (0.123092) | |
| cbl (0.114797) | |
| spc (0.113366) | |
| cty (0.10408) | |
| ldo (0.0970026) |
| Expressed library(ies): 22 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pro (0.512033) | |
| cbe (0.478469) | |
| ret (0.3862) | |
| fco (0.314416) | |
| lin (0.291206) | |
| nmm (0.265604) | |
| kid (0.259471) | |
| mgp (0.230681) | |
| fli (0.202881) | |
| fhi (0.169578) | |
| lun (0.150489) | |
| bfe (0.149858) | |
| fat (0.147427) | |
| pty (0.142714) | |
| ste (0.135208) | |
| lyg (0.133103) | |
| sug (0.127291) | |
| tra (0.123092) | |
| cbl (0.114797) | |
| spc (0.113366) | |
| cty (0.10408) | |
| ldo (0.0970026) |