Non-Coding RNA Search

Ss1.1-Pig4-TMW8065P03.3.5

Sequence:


               
               TTTTTTTTTTTTTTAAATAATGCAACTTTTAGGGACATCTATTTAGGACTTTTTCCCCAT
GGAACTATTGAAATGTAATTTAGGACAGCTCCCGTCTAAGGTAGCTAACATAGGCTGCAT
CATTCCTGCTTCAATTTAGATCCAACAAAATTTTAGTCAAGGAATAAGGGCATAATGAAG
ACAAGCTTCAGTTACTAAAATACAGACTAGTTAAGTAGATCATATTTAAAAAGGCAAGCA
GGAGCCCACATCTGCAGCTGAACAGTCTTCCTTCTGTGAAGTCATATTGTAGCTGTGTTT
TGGGTAGTGGTCCTCATCTCTCTTGACGTGCACAAGACTGACTGACCCCTGAGACGCGCA
TTGAACAAAATTTAAATCCCCGGCTTTCTACCCAGGGATCGCCTCGGTGGGCCTGGGTCT
GGAATCACCACTTTTTGAAAACAGCACTGCAGGCGGTTCAGAGATTGCCGCGAGGGAGGC
CGCTCCGGGGTCGAGGAAGTACAGGTTGGTGTTGTCTGGAGGCAGGTGGACAGCTTTTGT
CTTGGCTTCAGAATGGGTGCTGTGCTGCCAGCTCCAGTCACCGGGCGTTTACAGCGTTCA
GAGTGGTAGGGATGCCGCCACTAGACTAGAGGACTGCCTGACTCCTTGAAAATGTTTTTC
TAAATTAGGAAGTCACAGTGCCTTCTCTGAAAAATGAATGTACACGTATCCTGTTTACTA
ACAGGTGTAATTAGGATTTGAAGAAGAAAACTTTTGAAAGTTGTTTTTCTTTTAAAAAGC
AAAATTCAACACTGTGACTTGAACCTCTAAGTCTTTTATGCACAGAAAACCTTAAGCCAT
AATAAAAATGATGCCCCCAAAGAAAGGAGAGGATCATAACTTTGAAATTCAGTGACAAAA
TACCCTTTATTAGGGATTTTTCAAGATAGATCTAAGGGCAGAAAGATTTTCGAAGAAAAT
TTTCTTCCTTGGAAAGAAGTTTCAGGGGCCAGAACTGCAATTTCAATGTGGTATTCTTAT
GAACCAAGAGAAGGTTGCCTTTGTTTTCCAAAGCTTTCCAATTTAGGTGAATAAATGCTG
TATGGATTTAAAGCCTTAAAGGAGTTAACGTTGAGCATATATGTATTTTCCTCTCAGATT
TCCTTTCCTTTGAAAACATGATTTATTAAAAGCACTTTCTCCTAGACCCTTTTTGAATGG
CTTTAAAACTTAATATACTTTTTAAAAAGTGCAATGGATTAGATTGCTATTAGTATATTA
AAAGCATGTTTCTGTTTCTTAGTTTTAAGGTCATTTAATGGAATAAAGATCATAGCACCG
TGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTTTTTTAAATAATGCAACTTTTAGGGACATCTATTTAGGACTTTTTCCCCAT
GGAACTATTGAAATGTAATTTAGGACAGCTCCCGTCTAAGGTAGCTAACATAGGCTGCAT
CATTCCTGCTTCAATTTAGATCCAACAAAATTTTAGTCAAGGAATAAGGGCATAATGAAG
ACAAGCTTCAGTTACTAAAATACAGACTAGTTAAGTAGATCATATTTAAAAAGGCAAGCA
GGAGCCCACATCTGCAGCTGAACAGTCTTCCTTCTGTGAAGTCATATTGTAGCTGTGTTT
TGGGTAGTGGTCCTCATCTCTCTTGACGTGCACAAGACTGACTGACCCCTGAGACGCGCA
TTGAACAAAATTTAAATCCCCGGCTTTCTACCCAGGGATCGCCTCGGTGGGCCTGGGTCT
GGAATCACCACTTTTTGAAAACAGCACTGCAGGCGGTTCAGAGATTGCCGCGAGGGAGGC
CGCTCCGGGGTCGAGGAAGTACAGGTTGGTGTTGTCTGGAGGCAGGTGGACAGCTTTTGT
CTTGGCTTCAGAATGGGTGCTGTGCTGCCAGCTCCAGTCACCGGGCGTTTACAGCGTTCA
GAGTGGTAGGGATGCCGCCACTAGACTAGAGGACTGCCTGACTCCTTGAAAATGTTTTTC
TAAATTAGGAAGTCACAGTGCCTTCTCTGAAAAATGAATGTACACGTATCCTGTTTACTA
ACAGGTGTAATTAGGATTTGAAGAAGAAAACTTTTGAAAGTTGTTTTTCTTTTAAAAAGC
AAAATTCAACACTGTGACTTGAACCTCTAAGTCTTTTATGCACAGAAAACCTTAAGCCAT
AATAAAAATGATGCCCCCAAAGAAAGGAGAGGATCATAACTTTGAAATTCAGTGACAAAA
TACCCTTTATTAGGGATTTTTCAAGATAGATCTAAGGGCAGAAAGATTTTCGAAGAAAAT
TTTCTTCCTTGGAAAGAAGTTTCAGGGGCCAGAACTGCAATTTCAATGTGGTATTCTTAT
GAACCAAGAGAAGGTTGCCTTTGTTTTCCAAAGCTTTCCAATTTAGGTGAATAAATGCTG
TATGGATTTAAAGCCTTAAAGGAGTTAACGTTGAGCATATATGTATTTTCCTCTCAGATT
TCCTTTCCTTTGAAAACATGATTTATTAAAAGCACTTTCTCCTAGACCCTTTTTGAATGG
CTTTAAAACTTAATATACTTTTTAAAAAGTGCAATGGATTAGATTGCTATTAGTATATTA
AAAGCATGTTTCTGTTTCTTAGTTTTAAGGTCATTTAATGGAATAAAGATCATAGCACCG
TGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               4-1322, gnl|bosTau2|chr29 (35063664-35065004)
               

               
               4-1322, gnl|Hg17|chr11 (63149460-63148133)
               

               
               4-1322, gnl|Mm7|chr19 (7357186-7358466)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-1322, gnl|bosTau2|chr29 (35063664-35065004)
               

               
               4-1322, gnl|Hg17|chr11 (63149460-63148133)
               

               
               4-1322, gnl|Mm7|chr19 (7357186-7358466)

Expressed library(ies): 24 entry(ies)

More info

Expressed library(ies): 24 entry(ies)

Help | Less info


               
               spl (0.429553)
               

               
               rec (0.346141)
               

               
               lun (0.300978)
               

               
               ova (0.258264)
               

               
               hea (0.204499)
               

               
               aor (0.195274)
               

               
               sag (0.182715)
               

               
               gul (0.177588)
               

               
               fty (0.17584)
               

               
               ill (0.175593)
               

               
               ton (0.1755)
               

               
               tbr (0.154178)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               nca (0.136874)
               

               
               che (0.136314)
               

               
               ute (0.132784)
               

               
               kid (0.129735)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               eep (0.122564)
               

               
               ebs (0.118301)
               

               
               med (0.116252)
               

               
               spc (0.113366)

Expressed library(ies): 24 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spl (0.429553)
               

               
               rec (0.346141)
               

               
               lun (0.300978)
               

               
               ova (0.258264)
               

               
               hea (0.204499)
               

               
               aor (0.195274)
               

               
               sag (0.182715)
               

               
               gul (0.177588)
               

               
               fty (0.17584)
               

               
               ill (0.175593)
               

               
               ton (0.1755)
               

               
               tbr (0.154178)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               nca (0.136874)
               

               
               che (0.136314)
               

               
               ute (0.132784)
               

               
               kid (0.129735)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               eep (0.122564)
               

               
               ebs (0.118301)
               

               
               med (0.116252)
               

               
               spc (0.113366)

	4-1322, gnl\|bosTau2\|chr29 (35063664-35065004)
	4-1322, gnl\|Hg17\|chr11 (63149460-63148133)
	4-1322, gnl\|Mm7\|chr19 (7357186-7358466)

	spl (0.429553)
	rec (0.346141)
	lun (0.300978)
	ova (0.258264)
	hea (0.204499)
	aor (0.195274)
	sag (0.182715)
	gul (0.177588)
	fty (0.17584)
	ill (0.175593)
	ton (0.1755)
	tbr (0.154178)
	pty (0.142714)
	lnt (0.142308)
	nca (0.136874)
	che (0.136314)
	ute (0.132784)
	kid (0.129735)
	sug (0.127291)
	bla (0.124347)
	eep (0.122564)
	ebs (0.118301)
	med (0.116252)
	spc (0.113366)