Non-Coding RNA Search

Ss1.1-Pig4-TMW8065P11.3

Sequence:


               
               TGTTTTCTTCCTCCTACCCACCCCAACCCCCACCCATCACTTTTAAGAGCATAGTATGCC
AGTGTAACTTGGGAAAGACTGAGGTTGTACTTGCCCTGAGTATAAGAGCTAGCTTAGCAA
ACTGTTTTAAAAAGCATATTGGTAAACAATATCCATAAAACTGAATTAAATTATTTTAAA
ATACTGATATTTATTAATCATTGGATTTAGGAAAAGGAAGAGATTTTAGTAAAACCGACT
TGTGGCAGTTGGTAAGGGATATTTTAAAACATTTGGATAAGAACAATCAGGGCGAACTAC
ATTTTTCTGTTACACTGGTAATCATTTGAGAATTGATTTACCTCAGTGTTTAACAGTTTT
TTGTTTTGTTTTGTTTTTTAAATAATAACTAATTGTCAAGCACTGATAGAGATGCAGATT
TTGGTGGGGGCGGGGGTGGGGGAGAAATCACCTCACCAATTGCAGTGCATTTGTGTGTTT
TTAACCCTCAGAGAACTCTGCATTTTAGGGTACTTGAGGCTGACTTGCAAATTAACTAAA
GTTTTAAAGTAACCTTTTTTCCATTGTAAATATTTCTGTAAATACTACCAATTGGAAATT
AGAAGGTAGAGTACTTTTCTGAATCCAATCCTATTTTTATTTTATACAGTATTTCGCAGC
TGTGATCTTTGGAGCAAAAGCCAACGGCAGGAAAAAAAAATAGTTTGTACCAGTTTCATG
AAGTATGTCTTTGGGTTTTTGTAAATAATTTTAACTCAAATAAAATTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGTTTTCTTCCTCCTACCCACCCCAACCCCCACCCATCACTTTTAAGAGCATAGTATGCC
AGTGTAACTTGGGAAAGACTGAGGTTGTACTTGCCCTGAGTATAAGAGCTAGCTTAGCAA
ACTGTTTTAAAAAGCATATTGGTAAACAATATCCATAAAACTGAATTAAATTATTTTAAA
ATACTGATATTTATTAATCATTGGATTTAGGAAAAGGAAGAGATTTTAGTAAAACCGACT
TGTGGCAGTTGGTAAGGGATATTTTAAAACATTTGGATAAGAACAATCAGGGCGAACTAC
ATTTTTCTGTTACACTGGTAATCATTTGAGAATTGATTTACCTCAGTGTTTAACAGTTTT
TTGTTTTGTTTTGTTTTTTAAATAATAACTAATTGTCAAGCACTGATAGAGATGCAGATT
TTGGTGGGGGCGGGGGTGGGGGAGAAATCACCTCACCAATTGCAGTGCATTTGTGTGTTT
TTAACCCTCAGAGAACTCTGCATTTTAGGGTACTTGAGGCTGACTTGCAAATTAACTAAA
GTTTTAAAGTAACCTTTTTTCCATTGTAAATATTTCTGTAAATACTACCAATTGGAAATT
AGAAGGTAGAGTACTTTTCTGAATCCAATCCTATTTTTATTTTATACAGTATTTCGCAGC
TGTGATCTTTGGAGCAAAAGCCAACGGCAGGAAAAAAAAATAGTTTGTACCAGTTTCATG
AAGTATGTCTTTGGGTTTTTGTAAATAATTTTAACTCAAATAAAATTG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               294-531, + strand, RNAz p=0.989749

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               294-531, + strand, RNAz p=0.989749

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               354-508, + strand, RNAmicro p=0.949002

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               354-508, + strand, RNAmicro p=0.949002

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of D87450, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of D87450, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-768, gnl|bosTau2|chr28 (30944836-30945611)
               

               
               1-768, gnl|Hg17|chr10 (88185785-88185007)
               

               
               1-768, gnl|Mm7|chr14 (32178787-32179546)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-768, gnl|bosTau2|chr28 (30944836-30945611)
               

               
               1-768, gnl|Hg17|chr10 (88185785-88185007)
               

               
               1-768, gnl|Mm7|chr14 (32178787-32179546)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               mgp (0.230681)
               

               
               ill (0.175593)
               

               
               duo (0.172801)
               

               
               bfe (0.149858)
               

               
               bla (0.124347)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mgp (0.230681)
               

               
               ill (0.175593)
               

               
               duo (0.172801)
               

               
               bfe (0.149858)
               

               
               bla (0.124347)

	1-768, gnl\|bosTau2\|chr28 (30944836-30945611)
	1-768, gnl\|Hg17\|chr10 (88185785-88185007)
	1-768, gnl\|Mm7\|chr14 (32178787-32179546)

	mgp (0.230681)
	ill (0.175593)
	duo (0.172801)
	bfe (0.149858)
	bla (0.124347)