Ss1.1-Pig4-TMW8065P16.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GAAAGTGATGAAACCTCCCCAGCGGCTGCTCAGCTGCCGAAGAAGGAGAAGAAGAAGAAG AAGGACAAGAAGCCCAAGGCTGCTCCCGAGGGCGCAGCCGAGCCGGGAGATGGGGACAGT GACACCACCAAAAAGAAAAAGAAAAAGAAGAAAATAAAAGTGGAAGTGGTTTCTGAGTAG TGGATGGAGAAATTAAAGCCTTATTGAGAAAACTTCGTTCCGTTTGTTCTCGAGGGAATG GAACTTAAGGCCCAGAAAGGGCGGAGAGTTCCCGCGCGGCTCAGCTGGTGACGGGCCTGG GGCAGCCTTCCCACACCTCGTCCTGTTCTAAGGATCCGCTGAAGCGGGCAGACCTAGCCT CGCCCCTTCTCTGCCCAAGAGAGTTGGGGGGCCTCCTCCTCAGGCCCCGCGCCACCCAGG AACCCTTGTAGCGTCACGGGCCTCTCCTGCTTTGCTCCCCCGCCCCTTCCCTTGTCTAGA AAGTTCGGAAGCATTCAGTCAGCTCCACGAAATGCTGTAGAGCTGGGTTGTGGATTGAGG GGATAAACCGTCTTTCCAGTGTCCTTTGAGGACAGCGGTCTATGCTAGCGTCGGAGCCAC CTCTGTCACCCCGTTTCCTTCCGGATAGAAGCCTGGCCAAGCGCCTTGGCGTTGCATCTG GTCAGCTCTTTCCAGCCCCTCTGGCCCTTGTTCAGAGCTTGTACCCACTTCATGCACCTA AACCCATCTGGCTGCTTGTGTTCGTGAGAGAAGCCAACAAAGCATTCCTCTATTTTTCAT TTTAACCTTCATTTACTTTCATTGCTGGGAGAAGGTTGTAATTTTTACTTATTAAAGTTT ACTTATGAAGTTGGCATCTTCTGGGTGAGTTGTGAGGCCGGCACTTACATCCGGACGCTG TGCGTACACCTTGGTTTGCTGCTGGGCGTTGGCGGGCAGATGCAGGAACTTCGGCGAGTT CGGTCTGGAGTCATGAGTGAAAAGGACCACATGGTGACGATGCATGATGTGCTTGACGCC CAGTGGCTGTACGACAACCACAAGGATGAGAGTTACCTGCGGCGAGTTGTCTACCCTTTG GAAAAGCTATTGACATCTCATAAGCGGCTGGTCATGAAAGACAGTGCGGTCAATGCCATC TGCTACGGGGCGAAGATCATGCTGCCGGGCGTCCTCCGGTACGAGGACGGCATCGAGGTC AACCAGGAGATCGTGGTCATCACCACCAAAGGGGAGGCCATCTGCATGGCTGTCGCGTTA ATGACCACGGCGGTGATCTCCACCTGCGACCACGGCGTGGTCGCCAAGATCAAGAGGGTG ATCATGGAGAGGGACACGTACCCTCGGAAGTGGGGCTTAGGCCCCAAAGCGAGTCAGAAG AGGCTGATGATCAAGCAGGGCCTTTTGGACAAGCACGGCAAGCCCACCGACAGCACGCCC GCCGCCTGGACGCAGGACTATGTGGACTACAGTGATCCTGCGAAGAAGGAGGCGGCGGCC AAAGCCGTGAAAGCCCCACCGGCAGTGGCTGAAGCAGCAAAAGCCCCACAGCTGGTGGCT GAAGCAGCAAAAACCCCAAAGCGGAAGCGGGAGAGCGAAAGTGATGAAACCTCCCCAGCG GCTGCTCAGCTGCCGAAGAAGGAGAAGAAGAAGAAGAAGGACAAGAAGCCCAAGGCTGCT CCCGAGGGCGCAGCCGAGCCGGGAGATGGGGACAGTGACACCACCAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GAAAGTGATGAAACCTCCCCAGCGGCTGCTCAGCTGCCGAAGAAGGAGAAGAAGAAGAAG AAGGACAAGAAGCCCAAGGCTGCTCCCGAGGGCGCAGCCGAGCCGGGAGATGGGGACAGT GACACCACCAAAAAGAAAAAGAAAAAGAAGAAAATAAAAGTGGAAGTGGTTTCTGAGTAG TGGATGGAGAAATTAAAGCCTTATTGAGAAAACTTCGTTCCGTTTGTTCTCGAGGGAATG GAACTTAAGGCCCAGAAAGGGCGGAGAGTTCCCGCGCGGCTCAGCTGGTGACGGGCCTGG GGCAGCCTTCCCACACCTCGTCCTGTTCTAAGGATCCGCTGAAGCGGGCAGACCTAGCCT CGCCCCTTCTCTGCCCAAGAGAGTTGGGGGGCCTCCTCCTCAGGCCCCGCGCCACCCAGG AACCCTTGTAGCGTCACGGGCCTCTCCTGCTTTGCTCCCCCGCCCCTTCCCTTGTCTAGA AAGTTCGGAAGCATTCAGTCAGCTCCACGAAATGCTGTAGAGCTGGGTTGTGGATTGAGG GGATAAACCGTCTTTCCAGTGTCCTTTGAGGACAGCGGTCTATGCTAGCGTCGGAGCCAC CTCTGTCACCCCGTTTCCTTCCGGATAGAAGCCTGGCCAAGCGCCTTGGCGTTGCATCTG GTCAGCTCTTTCCAGCCCCTCTGGCCCTTGTTCAGAGCTTGTACCCACTTCATGCACCTA AACCCATCTGGCTGCTTGTGTTCGTGAGAGAAGCCAACAAAGCATTCCTCTATTTTTCAT TTTAACCTTCATTTACTTTCATTGCTGGGAGAAGGTTGTAATTTTTACTTATTAAAGTTT ACTTATGAAGTTGGCATCTTCTGGGTGAGTTGTGAGGCCGGCACTTACATCCGGACGCTG TGCGTACACCTTGGTTTGCTGCTGGGCGTTGGCGGGCAGATGCAGGAACTTCGGCGAGTT CGGTCTGGAGTCATGAGTGAAAAGGACCACATGGTGACGATGCATGATGTGCTTGACGCC CAGTGGCTGTACGACAACCACAAGGATGAGAGTTACCTGCGGCGAGTTGTCTACCCTTTG GAAAAGCTATTGACATCTCATAAGCGGCTGGTCATGAAAGACAGTGCGGTCAATGCCATC TGCTACGGGGCGAAGATCATGCTGCCGGGCGTCCTCCGGTACGAGGACGGCATCGAGGTC AACCAGGAGATCGTGGTCATCACCACCAAAGGGGAGGCCATCTGCATGGCTGTCGCGTTA ATGACCACGGCGGTGATCTCCACCTGCGACCACGGCGTGGTCGCCAAGATCAAGAGGGTG ATCATGGAGAGGGACACGTACCCTCGGAAGTGGGGCTTAGGCCCCAAAGCGAGTCAGAAG AGGCTGATGATCAAGCAGGGCCTTTTGGACAAGCACGGCAAGCCCACCGACAGCACGCCC GCCGCCTGGACGCAGGACTATGTGGACTACAGTGATCCTGCGAAGAAGGAGGCGGCGGCC AAAGCCGTGAAAGCCCCACCGGCAGTGGCTGAAGCAGCAAAAGCCCCACAGCTGGTGGCT GAAGCAGCAAAAACCCCAAAGCGGAAGCGGGAGAGCGAAAGTGATGAAACCTCCCCAGCG GCTGCTCAGCTGCCGAAGAAGGAGAAGAAGAAGAAGAAGGACAAGAAGCCCAAGGCTGCT CCCGAGGGCGCAGCCGAGCCGGGAGATGGGGACAGTGACACCACCAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 1260-1377, - strand, RNAz p=0.795063 | |
| 1269-1377, - strand, RNAz p=0.535698 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1260-1377, - strand, RNAz p=0.795063 | |
| 1269-1377, - strand, RNAz p=0.535698 |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 983-1143, gnl|bosTau2|chrX (13336919-13336759) | |
| 983-1143, gnl|Hg17|chrX (153561144-153561299) | |
| 983-1143, gnl|Mm7|chrX (70489069-70489224) | |
| 1239-1377, gnl|bosTau2|chrX (13334218-13334082) | |
| 1239-1377, gnl|canFam2|chrX (125868275-125868452) | |
| 1239-1377, gnl|danRer3|chrNA (10735374-10735223) | |
| 1239-1377, gnl|dasNov1|scaffold_10054 (10937-11108) | |
| 1239-1377, gnl|echTel1|scaffold_284873 (44721-44882) | |
| 1239-1377, gnl|fr1|chrUn (93357628-93357480) | |
| 1239-1377, gnl|galGal2|chr4 (1956656-1956809) | |
| 1239-1377, gnl|hg17|chrX (153565067-153565244) | |
| 1239-1377, gnl|Hg17|chrX (153565101-153565233) | |
| 1239-1377, gnl|loxAfr1|scaffold_53154 (3742-3564) | |
| 1239-1377, gnl|mm7|chrX (70492265-70492437) | |
| 1239-1377, gnl|Mm7|chrX (70492294-70492426) | |
| 1239-1377, gnl|monDom2|scaffold_197 (930015-930171) | |
| 1239-1377, gnl|oryCun1|scaffold_210654 (42318-42494) | |
| 1239-1377, gnl|panTro1|chrX (158868175-158868316) | |
| 1239-1377, gnl|rheMac2|chrX (152768108-152768285) | |
| 1239-1377, gnl|rn3|chr5 (98512642-98512525) | |
| 1239-1377, gnl|tetNig1|chrUn_random (82907626-82907772) | |
| 1239-1377, gnl|xenTro1|scaffold_247 (1121332-1121187) | |
| 1580-1686, gnl|bosTau2|chrX (13331942-13331836) | |
| 1580-1686, gnl|Hg17|chrX (153568164-153568279) | |
| 1580-1686, gnl|Mm7|chrX (70494826-70494938) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 983-1143, gnl|bosTau2|chrX (13336919-13336759) | |
| 983-1143, gnl|Hg17|chrX (153561144-153561299) | |
| 983-1143, gnl|Mm7|chrX (70489069-70489224) | |
| 1239-1377, gnl|bosTau2|chrX (13334218-13334082) | |
| 1239-1377, gnl|canFam2|chrX (125868275-125868452) | |
| 1239-1377, gnl|danRer3|chrNA (10735374-10735223) | |
| 1239-1377, gnl|dasNov1|scaffold_10054 (10937-11108) | |
| 1239-1377, gnl|echTel1|scaffold_284873 (44721-44882) | |
| 1239-1377, gnl|fr1|chrUn (93357628-93357480) | |
| 1239-1377, gnl|galGal2|chr4 (1956656-1956809) | |
| 1239-1377, gnl|hg17|chrX (153565067-153565244) | |
| 1239-1377, gnl|Hg17|chrX (153565101-153565233) | |
| 1239-1377, gnl|loxAfr1|scaffold_53154 (3742-3564) | |
| 1239-1377, gnl|mm7|chrX (70492265-70492437) | |
| 1239-1377, gnl|Mm7|chrX (70492294-70492426) | |
| 1239-1377, gnl|monDom2|scaffold_197 (930015-930171) | |
| 1239-1377, gnl|oryCun1|scaffold_210654 (42318-42494) | |
| 1239-1377, gnl|panTro1|chrX (158868175-158868316) | |
| 1239-1377, gnl|rheMac2|chrX (152768108-152768285) | |
| 1239-1377, gnl|rn3|chr5 (98512642-98512525) | |
| 1239-1377, gnl|tetNig1|chrUn_random (82907626-82907772) | |
| 1239-1377, gnl|xenTro1|scaffold_247 (1121332-1121187) | |
| 1580-1686, gnl|bosTau2|chrX (13331942-13331836) | |
| 1580-1686, gnl|Hg17|chrX (153568164-153568279) | |
| 1580-1686, gnl|Mm7|chrX (70494826-70494938) |
| Expressed library(ies): 14 entry(ies) | More info |
| Expressed library(ies): 14 entry(ies) | Help | Less info |
| cmu (0.186393) | |
| ill (0.175593) | |
| rec (0.17307) | |
| duo (0.172801) | |
| eye (0.170503) | |
| csp (0.161186) | |
| cli (0.152812) | |
| cag (0.151194) | |
| pty (0.142714) | |
| cov (0.132153) | |
| eep (0.122564) | |
| clu (0.119646) | |
| pgl (0.118483) | |
| nbm (0.0993246) |
| Expressed library(ies): 14 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cmu (0.186393) | |
| ill (0.175593) | |
| rec (0.17307) | |
| duo (0.172801) | |
| eye (0.170503) | |
| csp (0.161186) | |
| cli (0.152812) | |
| cag (0.151194) | |
| pty (0.142714) | |
| cov (0.132153) | |
| eep (0.122564) | |
| clu (0.119646) | |
| pgl (0.118483) | |
| nbm (0.0993246) |