Non-Coding RNA Search

Ss1.1-Pig4-TMW8066A07.3

Sequence:


               
               TTTAAATAGATTATTTGATGTTCCACATGACCCTTATGTCAAAATTAGTGATTCTTTTTG
GCCACCTTATATCGAGCTACTTCTGCGTAATGGAATTGCCTTGAGACATCCAGAAGATCC
AACCCGAATAAGATTAGAAGCCTTCCATCAATAAAAAGATGGTTTTTTTTCCCCACATAG
TACTTAAAGAATCTTGTCATTCAAGGATAATGGAAACACTGAAAATTACTTGGCTAACAA
ACATTATTTGCAAATCAAAATACACAGTCCTTCTTCTTCTTATGCTTAAAATGACTCATG
CTGCCATTTAATATTCATTTAAAAATGGTTCTTTCACAGTCAGTCAGTGCTTTGGTGTTT
TCAACTGGATGGACAAGAATGCAAGTAAAAAATATTCTAGACTTAATCATTATAAAACTT
TAAATGTACCTTAATTCTGCAATATTCTTTGGAAAATTCATTGTTAATTTATAATATTGC
TAATGTAATATTTTTCTTTTAAAATTTATGACAGTTTCTTTTATGCATTTTGAGTTACAT
ATGCAATGTTTACATTCTTTTTATTTAGAAATTATATTGGATAGGTCATTTAATTTGCAG
GAGGTTTAAAAATTGACGTAATGTCTTATGTAGAAAGAACCATAATTAAAAAGTATTTAG
TAAATATGTTTCATGTATACTGCCATATTTCTAGATTTCTTAAATAATTGGAATATAAAG
AAACTAATGGATAAAGGTAGTATGAAAACCATATGTAATGTATATTATAAGTAATATTAT
ATATAAACCATTCTTGATTCTGTTAATTATTACTAACAAAATGGTGTTCATAAAATTTTA
TTAATACTCTTCGGCCTTTTTGTAAATAAAATCCTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTAAATAGATTATTTGATGTTCCACATGACCCTTATGTCAAAATTAGTGATTCTTTTTG
GCCACCTTATATCGAGCTACTTCTGCGTAATGGAATTGCCTTGAGACATCCAGAAGATCC
AACCCGAATAAGATTAGAAGCCTTCCATCAATAAAAAGATGGTTTTTTTTCCCCACATAG
TACTTAAAGAATCTTGTCATTCAAGGATAATGGAAACACTGAAAATTACTTGGCTAACAA
ACATTATTTGCAAATCAAAATACACAGTCCTTCTTCTTCTTATGCTTAAAATGACTCATG
CTGCCATTTAATATTCATTTAAAAATGGTTCTTTCACAGTCAGTCAGTGCTTTGGTGTTT
TCAACTGGATGGACAAGAATGCAAGTAAAAAATATTCTAGACTTAATCATTATAAAACTT
TAAATGTACCTTAATTCTGCAATATTCTTTGGAAAATTCATTGTTAATTTATAATATTGC
TAATGTAATATTTTTCTTTTAAAATTTATGACAGTTTCTTTTATGCATTTTGAGTTACAT
ATGCAATGTTTACATTCTTTTTATTTAGAAATTATATTGGATAGGTCATTTAATTTGCAG
GAGGTTTAAAAATTGACGTAATGTCTTATGTAGAAAGAACCATAATTAAAAAGTATTTAG
TAAATATGTTTCATGTATACTGCCATATTTCTAGATTTCTTAAATAATTGGAATATAAAG
AAACTAATGGATAAAGGTAGTATGAAAACCATATGTAATGTATATTATAAGTAATATTAT
ATATAAACCATTCTTGATTCTGTTAATTATTACTAACAAAATGGTGTTCATAAAATTTTA
TTAATACTCTTCGGCCTTTTTGTAAATAAAATCCTC

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

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               1-876, gnl|bosTau2|chr20 (8903480-8904336)
               

               
               1-876, gnl|Hg17|chr5 (64850211-64849363)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-876, gnl|bosTau2|chr20 (8903480-8904336)
               

               
               1-876, gnl|Hg17|chr5 (64850211-64849363)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

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               fco (0.314416)
               

               
               sme (0.305437)
               

               
               ecc (0.115035)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fco (0.314416)
               

               
               sme (0.305437)
               

               
               ecc (0.115035)

	1-876, gnl\|bosTau2\|chr20 (8903480-8904336)
	1-876, gnl\|Hg17\|chr5 (64850211-64849363)